GEOSX
Classes | Protected Attributes | List of all members
geosx::ElementSubRegionBase Class Referenceabstract

#include <ElementSubRegionBase.hpp>

Inheritance diagram for geosx::ElementSubRegionBase:
Inheritance graph
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Classes

struct  groupKeyStruct
 struct to serve as a container for group strings and keys More...
 
struct  viewKeyStruct
 A struct to serve as a container for variable strings and keys. More...
 

Public Member Functions

Constructor / Destructor
 ElementSubRegionBase (string const &name, dataRepository::Group *const parent)
 Constructor for this class. More...
 
 ~ElementSubRegionBase ()
 Destructor.
 
Geometry computation / Connectivity
virtual void CalculateElementGeometricQuantities (NodeManager const &nodeManager, FaceManager const &faceManager)=0
 Calculate the geometric quantities for each element in the subregion. More...
 
virtual void setupRelatedObjectsInRelations (MeshLevel const *const mesh)=0
 Link the connectivity maps of the subregion to the managers storing the mesh information. More...
 
virtual void FixUpDownMaps (bool const clearIfUnmapped)
 Call ObjectManagerBase::FixUpDownMaps for the connectivity maps needed by the derived class (i.e., element-to-node map, element-to-face map, etc) More...
 
Getters / Setters
localIndex const & numNodesPerElement () const
 Get the number of nodes per element. More...
 
virtual localIndex numNodesPerElement (localIndex const k) const
 Get the number of nodes per element. More...
 
void setNumNodesPerElement (localIndex numNodes)
 Set the number of nodes per element. More...
 
localIndex const & numIndependentNodesPerElement () const
 Get the number of independent nodes per element. More...
 
void setNumIndependentNodesPerElement (localIndex const numNodes)
 Set the number of independent nodes per element. More...
 
localIndex const & numEdgesPerElement () const
 Get the number of edges per element. More...
 
void setNumEdgesPerElement (localIndex const numEdges)
 Set the number of edges per element. More...
 
localIndex const & numFacesPerElement () const
 Get the number of faces per element. More...
 
void setNumFacesPerElement (localIndex const numFaces)
 Set the number of faces per element. More...
 
arrayView2d< real64 const > getElementCenter () const
 Get the center of each element in this subregion. More...
 
arrayView2d< real64getElementCenter ()
 Get the center of each element in this subregion. More...
 
arrayView1d< real64 const > getElementVolume () const
 Get the volume of each element in this subregion. More...
 
dataRepository::Group const * GetConstitutiveModels () const
 Get the group in which the constitutive models of this subregion are registered. More...
 
dataRepository::GroupGetConstitutiveModels ()
 Get the group in which the constitutive models of this subregion are registered. More...
 
template<typename T = constitutive::ConstitutiveBase>
T const * getConstitutiveModel (string const &name) const
 Get a pointer to the constitutive model. More...
 
template<typename T = constitutive::ConstitutiveBase>
T * getConstitutiveModel (string const &name)
 Get a pointer to the constitutive model. More...
 
virtual string GetElementTypeString () const
 Get the type of element in this subregion. More...
 
virtual void SetElementType (string const &elementType)
 Set the type of element in this subregion. More...
 
std::vector< int > getVTKNodeOrdering () const
 Get the VTK ordering for this subregion. More...
 
- Public Member Functions inherited from geosx::ObjectManagerBase
 ObjectManagerBase (std::string const &name, dataRepository::Group *const parent)
 Constructor. More...
 
 ~ObjectManagerBase () override
 Destructor.
 
virtual localIndex PackSize (string_array const &wrapperNames, arrayView1d< localIndex const > const &packList, integer const recursive, bool on_device=false) const override
 Get the size required to pack a list of indices within a list of wrappers. More...
 
virtual localIndex Pack (buffer_unit_type *&buffer, string_array const &wrapperNames, arrayView1d< localIndex const > const &packList, integer const recursive, bool on_device=false) const override
 Pack a list of indices within a list of wrappers. More...
 
virtual localIndex Unpack (buffer_unit_type const *&buffer, arrayView1d< localIndex > &packList, integer const recursive, bool on_device=false) override
 Unpack a buffer. More...
 
template<bool DOPACK>
localIndex PackSets (buffer_unit_type *&buffer, arrayView1d< localIndex const > const &packList) const
 Packs the elements of each set that actually are in packList. More...
 
localIndex UnpackSets (buffer_unit_type const *&buffer)
 Unpack the content of buffer into the sets of the instance. More...
 
virtual void ViewPackingExclusionList (SortedArray< localIndex > &exclusionList) const
 Inserts in exclusionList the data that shall not be packed. More...
 
virtual localIndex PackGlobalMapsSize (arrayView1d< localIndex const > const &packList, integer const recursive) const
 Computes the pack size of the global maps elements in the @ packList. More...
 
virtual localIndex PackGlobalMaps (buffer_unit_type *&buffer, arrayView1d< localIndex const > const &packList, integer const recursive) const
 Packs the global maps elements in the @ packList. More...
 
void SetReceiveLists ()
 Clear and redefines the ghosts to receive.
 
virtual localIndex PackUpDownMapsSize (arrayView1d< localIndex const > const &packList) const
 Computes the pack size of the specific elements in the @ packList. More...
 
virtual localIndex PackUpDownMaps (buffer_unit_type *&buffer, arrayView1d< localIndex const > const &packList) const
 Packs the specific elements in the @ packList. More...
 
virtual localIndex UnpackUpDownMaps (buffer_unit_type const *&buffer, array1d< localIndex > &packList, bool const overwriteUpMaps, bool const overwriteDownMaps)
 Unpacks the specific elements in the @ packList. More...
 
virtual localIndex UnpackGlobalMaps (buffer_unit_type const *&buffer, localIndex_array &packList, integer const recursive)
 Unpacks the global maps from buffer. More...
 
localIndex PackParentChildMapsSize (arrayView1d< localIndex const > const &packList) const
 Computes the pack size of the parent/child relations in packList. More...
 
localIndex PackParentChildMaps (buffer_unit_type *&buffer, arrayView1d< localIndex const > const &packList) const
 Packs the parent/child relations in packList. More...
 
localIndex UnpackParentChildMaps (buffer_unit_type const *&buffer, localIndex_array &packList)
 Unacks the parent/child relations in packList. More...
 
void moveSets (LvArray::MemorySpace const targetSpace)
 Manually move all sets to a memory space. More...
 
localIndex resize (localIndex const newSize, const bool)
 Resize the group and all contained wrappers that resize with parent. More...
 
void CreateSet (const std::string &newSetName)
 Creates a new set. More...
 
void ConstructSetFromSetAndMap (SortedArrayView< localIndex const > const &inputSet, const array2d< localIndex > &map, const std::string &setName)
 Builds a new set on this instance given another objects set and the map between them. More...
 
void ConstructSetFromSetAndMap (SortedArrayView< localIndex const > const &inputSet, const array1d< localIndex_array > &map, const std::string &setName)
 Builds a new set on this instance given another objects set and the map between them. More...
 
void ConstructSetFromSetAndMap (SortedArrayView< localIndex const > const &inputSet, ArrayOfArraysView< localIndex const > const &map, const std::string &setName)
 Builds a new set on this instance given another objects set and the map between them. More...
 
void ConstructGlobalToLocalMap ()
 Constructs the global to local map.
 
void ConstructLocalListOfBoundaryObjects (localIndex_array &objectList) const
 Computes the (local) index list that are domain boundaries. More...
 
void ConstructGlobalListOfBoundaryObjects (globalIndex_array &objectList) const
 Computes the (global) index list that are domain boundaries. More...
 
virtual void ExtractMapFromObjectForAssignGlobalIndexNumbers (ObjectManagerBase const *const obj, std::vector< std::vector< globalIndex > > &map)
 Extract map from object and assign global indices. More...
 
void SetGhostRankForSenders (int const neighborRank)
 Defines neighborRank ownership for ghost objects. More...
 
localIndex GetNumberOfGhosts () const
 Get the number of ghost objects. More...
 
localIndex GetNumberOfLocalIndices () const
 Get the number of locally owned objects. More...
 
integer SplitObject (localIndex const indexToSplit, int const rank, localIndex &newIndex)
 Split object to deal with topology changes. More...
 
void inheritGhostRankFromParent (std::set< localIndex > const &indices)
 sets the value of m_ghostRank to the value of the objects parent. More...
 
void CopyObject (localIndex const source, localIndex const destination)
 Copy object from source to @ destination. More...
 
void SetMaxGlobalIndex ()
 Computes the maximum global index allong all the MPI ranks.
 
virtual void enforceStateFieldConsistencyPostTopologyChange (std::set< localIndex > const &targetIndices)
 Updates the child and target indices after a topology change. More...
 
template<typename MESH_DATA_TRAIT >
dataRepository::Wrapper< typename MESH_DATA_TRAIT::type > & registerExtrinsicData (string const &nameOfRegisteringObject)
 Register data with this ObjectManagerBase using a dataRepository::Wrapper. More...
 
template<typename MESH_DATA_TRAIT0 , typename MESH_DATA_TRAIT1 , typename ... MESH_DATA_TRAITS>
void registerExtrinsicData (string const &nameOfRegisteringObject)
 Register a collection of data with this ObjectManagerBase using a dataRepository::Wrapper. More...
 
template<typename MESH_DATA_TRAIT >
GEOSX_DECLTYPE_AUTO_RETURN getExtrinsicData () const
 Get a view to the data associated with a trait from this ObjectManagerBase. More...
 
template<typename MESH_DATA_TRAIT >
GEOSX_DECLTYPE_AUTO_RETURN getExtrinsicData ()
 Get the data associated with a trait from this ObjectManagerBase. More...
 
template<typename MESH_DATA_TRAIT >
bool hasExtrinsicData () const
 Checks if an extrinsic data has been registered. More...
 
virtual viewKeyStructviewKeys ()
 Get the view keys for Group access. More...
 
virtual viewKeyStruct const & viewKeys () const
 Get the view keys for Group access, const version. More...
 
virtual groupKeyStructgroupKeys ()
 Get the group keys for Group access. More...
 
virtual groupKeyStruct const & groupKeys () const
 Get the group keys for Group access, const version. More...
 
Groupsets ()
 Get the group holding the object sets. More...
 
Group const & sets () const
 Get the group holding the object sets, const version. More...
 
SortedArray< localIndex > & externalSet ()
 Get the external set. More...
 
SortedArrayView< localIndex const > externalSet () const
 Get the external set, const version. More...
 
void updateGlobalToLocalMap (localIndex const lid)
 Updates (if needed) the global index for local index lid. More...
 
arrayView1d< globalIndexlocalToGlobalMap ()
 Get local to global map. More...
 
arrayView1d< globalIndex const > localToGlobalMap () const
 Get local to global map, const version. More...
 
unordered_map< globalIndex, localIndex > const & globalToLocalMap () const
 Get global to local map. More...
 
localIndex globalToLocalMap (globalIndex const gid) const
 Retrieves the local index for given global index. More...
 
array1d< integer > const & isExternal ()
 Get the locality information of the objects. More...
 
arrayView1d< integer const > isExternal () const
 Get the locality information of the objects. More...
 
array1d< integer > const & ghostRank ()
 Get the ghost information of each object. More...
 
arrayView1d< integer const > ghostRank () const
 Get the ghost information of each object, const version. More...
 
NeighborData & getNeighborData (int const rank)
 Get neighbor data for given rank. More...
 
NeighborData const & getNeighborData (int const rank) const
 Get neighbor data for given rank, const version. More...
 
void addNeighbor (int const rank)
 Add a neighbor for rank. More...
 
void removeNeighbor (int const rank)
 Remove neighbor for rank. More...
 
globalIndex maxGlobalIndex () const
 Get the maximum global index of all objects across all rank. See. More...
 
arrayView1d< integergetDomainBoundaryIndicator ()
 Get the domain boundary indicator. More...
 
arrayView1d< integer const > getDomainBoundaryIndicator () const
 Get the domain boundary indicator. More...
 
virtual const string getCatalogName () const =0
 Get the name of the catalog. More...
 
- Public Member Functions inherited from geosx::dataRepository::Group
 Group (std::string const &name, Group *const parent)
 Constructor. More...
 
 Group (Group &&source)
 Move constructor. More...
 
virtual ~Group ()
 Destructor, deletes all Groups and Wrappers owned by this Group.
 
 Group ()=delete
 Deleted default constructor.
 
 Group (Group const &)=delete
 Deleted copy constructor.
 
 Group (Group const &&)=delete
 Deleted move constructor.
 
Groupoperator= (Group const &)=delete
 Deleted copy assignment operator. More...
 
Groupoperator= (Group &&)=delete
 Deleted move assignment operator. More...
 
virtual const std::type_info & get_typeid () const
 Get typeid for current group. More...
 
bool CheckTypeID (std::type_info const &typeToCheck) const
 Check a type_info against the type_info of this Group. More...
 
void PrintDataHierarchy (integer indent=0)
 Prints the data hierarchy recursively. More...
 
string dumpInputOptions () const
 
template<typename T = Group>
T * RegisterGroup (std::string const &name, std::unique_ptr< T > newObject)
 Register a new Group as a sub-group of current Group. More...
 
template<typename T = Group>
T * RegisterGroup (std::string const &name, T *newObject)
 Register a new Group as a sub-group of current Group. More...
 
template<typename T = Group>
T * RegisterGroup (std::string const &name)
 Register a new Group as a sub-group of current Group. More...
 
template<typename T = Group>
T * RegisterGroup (subGroupMap::KeyIndex const &keyIndex)
 Register a new Group as a sub-group of current Group. More...
 
template<typename T = Group, typename TBASE = Group>
T * RegisterGroup (std::string const &name, std::string const &catalogName)
 Register a new Group as a sub-group of current Group. More...
 
void deregisterGroup (std::string const &name)
 Removes a child group from this group. More...
 
virtual GroupCreateChild (string const &childKey, string const &childName)
 Creates a new sub-Group using the ObjectCatalog functionality. More...
 
template<typename T = Group>
T * GetGroup (localIndex index)
 Retrieve a sub-group from the current Group using an index. More...
 
template<typename T = Group>
T const * GetGroup (localIndex index) const
 Retrieve a sub-group from the current Group using an index. More...
 
template<typename T = Group>
T * GetGroup (string const &name)
 Retrieve a sub-group from the current Group using a string. More...
 
template<typename T = Group>
T const * GetGroup (string const &name) const
 Retrieve a sub-group from the current Group using a string. More...
 
template<typename T = Group>
T & getGroupReference (string const &key)
 
template<typename T = Group>
T const & getGroupReference (string const &key) const
 
template<typename T = Group>
T & GetGroupReference (subGroupMap::KeyIndex const &key)
 
template<typename T = Group>
T const & GetGroupReference (subGroupMap::KeyIndex const &key) const
 
template<typename T = Group>
T * GetGroup (subGroupMap::KeyIndex const &key)
 Retrieve a sub-group from the current Group using a KeyIndexT. More...
 
template<typename T = Group>
T const * GetGroup (subGroupMap::KeyIndex const &key) const
 Retrieve a sub-group from the current Group using a KeyIndexT. More...
 
template<typename T = Group>
T * GetGroupByPath (string const &path)
 Retrieve a group from the hierarchy using a path. More...
 
template<typename T = Group>
T const * GetGroupByPath (string const &path) const
 Retrieve a group from the hierarchy using a path. More...
 
subGroupMapGetSubGroups ()
 Get the subgroups object. More...
 
subGroupMap const & GetSubGroups () const
 Get the subgroups object. More...
 
localIndex numSubGroups () const
 return the number of sub groups in this Group More...
 
bool hasGroup (std::string const &name) const
 Check whether a sub-group exists. More...
 
template<typename GROUPTYPE = Group, typename ... GROUPTYPES, typename LAMBDA >
void forSubGroups (LAMBDA lambda)
 Apply the given functor to subgroups that can be casted to one of specified types. More...
 
template<typename GROUPTYPE = Group, typename ... GROUPTYPES, typename LAMBDA >
void forSubGroups (LAMBDA lambda) const
 Apply the given functor to subgroups that can be casted to one of specified types. More...
 
template<typename GROUPTYPE = Group, typename ... GROUPTYPES, typename LOOKUP_CONTAINER , typename LAMBDA >
void forSubGroups (LOOKUP_CONTAINER const &subGroupKeys, LAMBDA lambda)
 
template<typename GROUPTYPE = Group, typename ... GROUPTYPES, typename LOOKUP_CONTAINER , typename LAMBDA >
void forSubGroups (LOOKUP_CONTAINER const &subGroupKeys, LAMBDA lambda) const
 
template<typename LAMBDA >
void forWrappers (LAMBDA lambda)
 Apply the given functor to wrappers. More...
 
template<typename LAMBDA >
void forWrappers (LAMBDA lambda) const
 Apply the given functor to wrappers. More...
 
template<typename TYPE , typename ... TYPES, typename LAMBDA >
void forWrappers (LAMBDA lambda)
 Apply the given functor to wrappers that can be cast to one of specified types. More...
 
template<typename TYPE , typename ... TYPES, typename LAMBDA >
void forWrappers (LAMBDA lambda) const
 Apply the given functor to wrappers that can be cast to one of specified types. More...
 
void Initialize (Group *const group)
 Run initialization functions on this and all subgroups. More...
 
virtual void InitializationOrder (string_array &order)
 Sets the initialization order for sub-Groups. More...
 
void InitializePostInitialConditions (Group *const group)
 Initialization routine to be called after calling ApplyInitialConditions(). More...
 
void postRestartInitializationRecursive (Group *const domain)
 Initialization routine to be called after calling reading a restart file. More...
 
void ProcessInputFileRecursive (xmlWrapper::xmlNode &targetNode)
 Recursively read values using ProcessInputFile() from the input file and put them into the wrapped values for this group. More...
 
void PostProcessInputRecursive ()
 Recursively call PostProcessInput() to apply post processing after reading input values.
 
template<typename T , typename TBASE = T>
Wrapper< TBASE > * registerWrapper (std::string const &name, wrapperMap::KeyIndex::index_type *const rkey=nullptr)
 Create and register a Wrapper around a new object. More...
 
template<typename T , typename TBASE = T>
Wrapper< TBASE > * registerWrapper (Group::wrapperMap::KeyIndex const &viewKey)
 
template<typename T >
Wrapper< T > * registerWrapper (std::string const &name, std::unique_ptr< T > newObject)
 Register a Wrapper around a given object and take ownership. More...
 
template<typename T >
Wrapper< T > * registerWrapper (std::string const &name, T *newObject)
 Register a Wrapper around an existing object, does not take ownership of the object. More...
 
WrapperBaseregisterWrapper (string const &name, std::unique_ptr< WrapperBase > wrapper)
 Register and take ownership of an existing Wrapper. More...
 
void deregisterWrapper (string const &name)
 Removes a Wrapper from this group. More...
 
void GenerateDataStructureSkeleton (integer const level)
 Build a complete datastructure for schema generation. More...
 
virtual void ExpandObjectCatalogs ()
 Expand any catalogs in the data structure.
 
virtual void SetSchemaDeviations (xmlWrapper::xmlNode schemaRoot, xmlWrapper::xmlNode schemaParent, integer documentationType)
 Inform the schema generator of any deviations between the xml and GEOS data structures. More...
 
virtual void RegisterDataOnMeshRecursive (Group *const meshBodies)
 Calls RegisterDataOnMesh() recursively. More...
 
virtual void RegisterDataOnMesh (Group *const meshBodies)
 Register data on mesh entities. More...
 
virtual localIndex PackSize (string_array const &wrapperNames, integer const recursive, bool on_device=false) const
 Get the size required to pack a list of wrappers. More...
 
virtual localIndex Pack (buffer_unit_type *&buffer, string_array const &wrapperNames, integer const recursive, bool on_device=false) const
 Pack a list of wrappers to a buffer. More...
 
WrapperBase const * getWrapperBase (indexType const index) const
 Retrieve a WrapperBase stored in this group. More...
 
WrapperBasegetWrapperBase (indexType const index)
 Retrieve a WrapperBase stored in this group. More...
 
WrapperBase const * getWrapperBase (std::string const &name) const
 Retrieve a WrapperBase stored in this group. More...
 
WrapperBasegetWrapperBase (std::string const &name)
 Retrieve a WrapperBase stored in this group. More...
 
WrapperBase const * getWrapperBase (wrapperMap::KeyIndex const &keyIndex) const
 Retrieve a WrapperBase stored in this group. More...
 
WrapperBasegetWrapperBase (wrapperMap::KeyIndex const &keyIndex)
 Retrieve a WrapperBase stored in this group. More...
 
indexType getWrapperIndex (std::string const &name) const
 
wrapperMap const & wrappers () const
 Get access to the internal wrapper storage. More...
 
wrapperMapwrappers ()
 Get access to the internal wrapper storage. More...
 
template<typename LOOKUP_TYPE >
bool hasWrapper (LOOKUP_TYPE const &lookup) const
 Check if a wrapper exists. More...
 
template<typename T , typename LOOKUP_TYPE >
Wrapper< T > const * getWrapper (LOOKUP_TYPE const &index) const
 Retrieve a Wrapper stored in this group. More...
 
template<typename T , typename LOOKUP_TYPE >
Wrapper< T > * getWrapper (LOOKUP_TYPE const &index)
 Retrieve a Wrapper stored in this group. More...
 
template<typename T >
Wrapper< T > const * getWrapper (char const *const key) const
 Retrieve a Wrapper stored in this group. More...
 
template<typename T >
Wrapper< T > * getWrapper (char const *const key)
 Retrieve a Wrapper stored in this group. More...
 
template<typename T , typename LOOKUP_TYPE >
GEOSX_DECLTYPE_AUTO_RETURN getReference (LOOKUP_TYPE const &lookup) const
 Look up a wrapper and get reference to wrapped object. More...
 
template<typename T , typename LOOKUP_TYPE >
T & getReference (LOOKUP_TYPE const &lookup)
 Look up a wrapper and get reference to wrapped object. More...
 
template<typename T >
GEOSX_DECLTYPE_AUTO_RETURN getReference (char const *const name) const
 
template<typename T >
T & getReference (char const *const name)
 
virtual void resize (localIndex const newSize)
 Resize the group and all contained wrappers that resize with parent. More...
 
virtual void reserve (indexType const newsize)
 Set the new capacity and reserve it in all wrappers that resize with parent. More...
 
localIndex capacity () const
 Get the "capacity" of the group, which determines the capacity of resizable wrappers. More...
 
localIndex size () const
 Get the "size" of the group, which determines the number of elements in resizable wrappers. More...
 
const string getName () const
 Get group name. More...
 
GroupgetParent ()
 Access the group's parent. More...
 
Group const * getParent () const
 Access the group's parent. More...
 
localIndex getIndexInParent () const
 Get the group's index withing its parent group. More...
 
integer sizedFromParent () const
 Check whether this Group is resized when its parent is resized. More...
 
GroupsetSizedFromParent (int val)
 Set whether this wrapper is resized when its parent is resized. More...
 
RestartFlags getRestartFlags () const
 Get flags that control restart output of this group. More...
 
void setRestartFlags (RestartFlags flags)
 Set flags that control restart output of this group. More...
 
InputFlags getInputFlags () const
 Get input flags for schema generation. More...
 
void setInputFlags (InputFlags flags)
 Set input flags for schema generation. More...
 
conduit::Node & getConduitNode ()
 Get the Conduit node object associated with this group. More...
 
void prepareToWrite ()
 Register the group and its wrappers with Conduit.
 
void finishWriting ()
 Write the group and its wrappers into Conduit.
 
void loadFromConduit ()
 Read the group and its wrappers from Conduit.
 
void enableLogLevelInput ()
 Enable verbosity input for object.
 
integer getLogLevel () const
 
template<typename T >
group_cast ()
 Downcast this Group. More...
 
template<typename T >
group_cast () const
 Downcast this Group. More...
 

Protected Attributes

localIndex m_numNodesPerElement
 Number of nodes per element in this subregion.
 
localIndex m_numIndependentNodesPerElement
 Number of independent nodes per element in this subregion.
 
localIndex m_numEdgesPerElement
 Number of edges per element in this subregion.
 
localIndex m_numFacesPerElement
 Number of faces per element in this subregion.
 
array2d< real64m_elementCenter
 Member level field for the element center.
 
array1d< real64m_elementVolume
 Member level field for the element volume.
 
string m_elementTypeString
 Type of element in this subregion.
 
- Protected Attributes inherited from geosx::ObjectManagerBase
Group m_sets
 Group that holds object sets.
 
Group m_neighborGroup
 Group that holds all the NeighborData objects.
 
array1d< globalIndexm_localToGlobalMap
 Contains the global index of each object.
 
unordered_map< globalIndex, localIndexm_globalToLocalMap
 Map from object global index to the local index.
 
array1d< integerm_isExternal
 Array that holds if an object is external.
 
array1d< integerm_domainBoundaryIndicator
 Domain boundary indicator: 1 means the "index" is on the boundary.
 
array1d< integerm_ghostRank
 Array that holds the ghost information about each object. More...
 
unordered_map< int, NeighborData > m_neighborData
 A map from rank to the associated NeighborData object.
 
real64 m_overAllocationFactor = 1.1
 Factor by which to overallocate when adding objects.
 
globalIndex m_maxGlobalIndex = -1
 The maximum global index of all objects across all rank.
 
globalIndex m_localMaxGlobalIndex = -1
 The maximum global index of any object of all objects on this rank.
 

Additional Inherited Members

- Public Types inherited from geosx::ObjectManagerBase
using CatalogInterface = dataRepository::CatalogInterface< ObjectManagerBase, std::string const &, dataRepository::Group *const >
 Nested type for the factory pattern, defining the base class (ObjectManagerBase) and the builder arguments (std::string const &, dataRepository::Group * const) of the derived products.
 
- Public Types inherited from geosx::dataRepository::Group
using subGroupMap = MappedVector< Group, Group *, keyType, indexType >
 The template specialization of MappedVector to use for the collection of sub-Group objects.
 
using wrapperMap = MappedVector< WrapperBase, WrapperBase *, keyType, indexType >
 The template specialization of MappedVector to use for the collection wrappers objects.
 
using CatalogInterface = dataRepository::CatalogInterface< Group, std::string const &, Group *const >
 Type alias for catalog interface used by this class. See CatalogInterface.
 
- Static Public Member Functions inherited from geosx::ObjectManagerBase
template<typename TYPE_RELATION >
static void FixUpDownMaps (TYPE_RELATION &relation, map< localIndex, array1d< globalIndex > > &unmappedIndices, bool const clearIfUnmapped)
 Fixing the up/down maps by mapping the unmapped indices. More...
 
template<typename TYPE_RELATION >
static void FixUpDownMaps (TYPE_RELATION &relation, map< localIndex, SortedArray< globalIndex > > &unmappedIndices, bool const clearIfUnmapped)
 Fixing the up/down maps by mapping the unmapped indices. More...
 
static void FixUpDownMaps (ArrayOfSets< localIndex > &relation, unordered_map< globalIndex, localIndex > const &globalToLocal, map< localIndex, SortedArray< globalIndex > > &unmappedIndices, bool const clearIfUnmapped)
 Fixing the up/down maps by mapping the unmapped indices. More...
 
static void CleanUpMap (std::set< localIndex > const &targetIndices, array1d< SortedArray< localIndex > > &upmap, arrayView2d< localIndex const > const &downmap)
 Removes from the list of arrays of upmap all the elements for which the "mirror target array" of downmap does not contain the proper target index. More...
 
static void CleanUpMap (std::set< localIndex > const &targetIndices, ArrayOfSetsView< localIndex > const &upmap, arrayView2d< localIndex const > const &downmap)
 Removes from the list of sets of upmap all the elements for which the "mirror target array" of downmap does not contain the proper target index. More...
 
static void CleanUpMap (std::set< localIndex > const &targetIndices, array1d< SortedArray< localIndex > > &upmap, arrayView1d< arrayView1d< localIndex const > const > const &downmap)
 Removes from the list of arrays of upmap all the elements for which the "mirror target array" of downmap does not contain the proper target index. More...
 
static void CleanUpMap (std::set< localIndex > const &targetIndices, ArrayOfSetsView< localIndex > const &upmap, arrayView1d< arrayView1d< localIndex const > const > const &downmap)
 Removes from the list of sets of upmap all the elements for which the "mirror target array" of downmap does not contain the proper target index. More...
 
static void CleanUpMap (std::set< localIndex > const &targetIndices, ArrayOfSetsView< localIndex > const &upmap, ArrayOfArraysView< localIndex const > const &downmap)
 Removes from the list of sets of upmap all the elements for which the "mirror target array" of downmap does not contain the proper target index. More...
 
static localIndex GetParentRecusive (arraySlice1d< localIndex const > const &parentIndices, localIndex const lookup)
 Get the upmost parent. More...
 
static CatalogInterface::CatalogTypeGetCatalog ()
 Acessing the unique instance of this catalog. More...
 
- Static Public Member Functions inherited from geosx::dataRepository::Group
template<typename T0 , typename T1 , typename ... CASTTYPES, typename CONTAINERTYPE , typename LAMBDA >
static bool applyLambdaToContainer (CONTAINERTYPE &container, LAMBDA &&lambda)
 Apply a given functor to a container if the container can be cast to one of the specified types. More...
 
static CatalogInterface::CatalogTypeGetCatalog ()
 Get the singleton catalog for this class. More...
 
template<typename T >
static T group_cast (Group *group)
 Downcast a Group *. More...
 
template<typename T >
static T group_cast (Group const *group)
 Downcast a Group const *. More...
 
- Public Attributes inherited from geosx::ObjectManagerBase
struct geosx::ObjectManagerBase::viewKeyStruct m_ObjectManagerBaseViewKeys
 viewKey struct for the ObjectManagerBase class
 
struct geosx::ObjectManagerBase::groupKeyStruct m_ObjectManagerBaseGroupKeys
 groupKey struct for the ObjectManagerBase class
 
- Protected Member Functions inherited from geosx::dataRepository::Group
virtual void PostProcessInput ()
 
virtual void InitializePreSubGroups (Group *const group)
 Called by Initialize() prior to initializing sub-Groups. More...
 
virtual void InitializePostSubGroups (Group *const group)
 Called by Initialize() after to initializing sub-Groups. More...
 
virtual void InitializePostInitialConditions_PreSubGroups (Group *const group)
 Called by InitializePostInitialConditions() prior to initializing sub-Groups. More...
 
virtual void InitializePostInitialConditions_PostSubGroups (Group *const group)
 Called by InitializePostInitialConditions() after to initializing sub-Groups. More...
 
virtual void postRestartInitialization (Group *const domain)
 Performs initialization required after reading from a restart file. More...
 

Detailed Description

Abstract class for a collection of mesh elements that will be derived and specialized for cell elements, face (fracture) elements, embedded surface (fracture) elements, well elements, etc

Definition at line 42 of file ElementSubRegionBase.hpp.

Constructor & Destructor Documentation

◆ ElementSubRegionBase()

geosx::ElementSubRegionBase::ElementSubRegionBase ( string const &  name,
dataRepository::Group *const  parent 
)

Constructor for this class.

Parameters
[in]namethe name of this object manager
[in]parentthe parent Group

Member Function Documentation

◆ CalculateElementGeometricQuantities()

virtual void geosx::ElementSubRegionBase::CalculateElementGeometricQuantities ( NodeManager const &  nodeManager,
FaceManager const &  faceManager 
)
pure virtual

Calculate the geometric quantities for each element in the subregion.

Parameters
[in]nodeManagerthe nodeManager (for geometrical info and connectivity involving nodes)
[in]faceManagerthe faceManager (for geometrical info and connectivity involving faces)

Implemented in geosx::AggregateElementSubRegion, geosx::CellBlock, geosx::WellElementSubRegion, geosx::EmbeddedSurfaceSubRegion, and geosx::FaceElementSubRegion.

◆ FixUpDownMaps()

virtual void geosx::ElementSubRegionBase::FixUpDownMaps ( bool const  clearIfUnmapped)
inlinevirtual

Call ObjectManagerBase::FixUpDownMaps for the connectivity maps needed by the derived class (i.e., element-to-node map, element-to-face map, etc)

Parameters
[in]clearIfUnmappedclearIfUnmapped

Reimplemented in geosx::WellElementSubRegion, geosx::FaceElementSubRegion, and geosx::CellElementSubRegion.

Definition at line 94 of file ElementSubRegionBase.hpp.

◆ getConstitutiveModel() [1/2]

template<typename T = constitutive::ConstitutiveBase>
T const* geosx::ElementSubRegionBase::getConstitutiveModel ( string const &  name) const
inline

Get a pointer to the constitutive model.

Template Parameters
TThe type of the constitutive model.
Parameters
nameThe name of the constitutive model.
Returns
A pointer to the constitutive model.

Definition at line 212 of file ElementSubRegionBase.hpp.

◆ getConstitutiveModel() [2/2]

template<typename T = constitutive::ConstitutiveBase>
T* geosx::ElementSubRegionBase::getConstitutiveModel ( string const &  name)
inline

Get a pointer to the constitutive model.

Template Parameters
TThe type of the constitutive model.
Parameters
nameThe name of the constitutive model.
Returns
A pointer to the constitutive model.

Definition at line 221 of file ElementSubRegionBase.hpp.

◆ GetConstitutiveModels() [1/2]

dataRepository::Group const* geosx::ElementSubRegionBase::GetConstitutiveModels ( ) const
inline

Get the group in which the constitutive models of this subregion are registered.

Returns
a pointer to the const group in which the constitutive models are registered

Definition at line 196 of file ElementSubRegionBase.hpp.

◆ GetConstitutiveModels() [2/2]

dataRepository::Group* geosx::ElementSubRegionBase::GetConstitutiveModels ( )
inline

Get the group in which the constitutive models of this subregion are registered.

Returns
a pointer to the const group in which the constitutive models are registered

Definition at line 202 of file ElementSubRegionBase.hpp.

◆ getElementCenter() [1/2]

arrayView2d< real64 const > geosx::ElementSubRegionBase::getElementCenter ( ) const
inline

Get the center of each element in this subregion.

Returns
an arrayView1d of const element centers

Definition at line 176 of file ElementSubRegionBase.hpp.

◆ getElementCenter() [2/2]

arrayView2d< real64 > geosx::ElementSubRegionBase::getElementCenter ( )
inline

Get the center of each element in this subregion.

Returns
an arrayView1d of const element centers

Definition at line 182 of file ElementSubRegionBase.hpp.

◆ GetElementTypeString()

virtual string geosx::ElementSubRegionBase::GetElementTypeString ( ) const
inlinevirtual

Get the type of element in this subregion.

Returns
a string specifying the type of element in this subregion

See class FiniteElementBase for possible element type.

Reimplemented in geosx::EmbeddedSurfaceSubRegion.

Definition at line 233 of file ElementSubRegionBase.hpp.

◆ getElementVolume()

arrayView1d< real64 const > geosx::ElementSubRegionBase::getElementVolume ( ) const
inline

Get the volume of each element in this subregion.

Returns
an arrayView1d of const element volumes

Definition at line 189 of file ElementSubRegionBase.hpp.

◆ getVTKNodeOrdering()

std::vector< int > geosx::ElementSubRegionBase::getVTKNodeOrdering ( ) const

Get the VTK ordering for this subregion.

Returns
the VTK node ordering

◆ numEdgesPerElement()

localIndex const& geosx::ElementSubRegionBase::numEdgesPerElement ( ) const
inline

Get the number of edges per element.

Returns
the number of edges per element

Definition at line 148 of file ElementSubRegionBase.hpp.

◆ numFacesPerElement()

localIndex const& geosx::ElementSubRegionBase::numFacesPerElement ( ) const
inline

Get the number of faces per element.

Returns
number of faces per element

Definition at line 163 of file ElementSubRegionBase.hpp.

◆ numIndependentNodesPerElement()

localIndex const& geosx::ElementSubRegionBase::numIndependentNodesPerElement ( ) const
inline

Get the number of independent nodes per element.

Returns
numNodes the number of independent nodes per element

Currently, the number of independent nodes per element is always equal to the number of nodes per element, except for the case of a triangular prism

Definition at line 133 of file ElementSubRegionBase.hpp.

◆ numNodesPerElement() [1/2]

localIndex const& geosx::ElementSubRegionBase::numNodesPerElement ( ) const
inline

Get the number of nodes per element.

Returns
number of nodes per element

Definition at line 107 of file ElementSubRegionBase.hpp.

◆ numNodesPerElement() [2/2]

virtual localIndex geosx::ElementSubRegionBase::numNodesPerElement ( localIndex const  k) const
inlinevirtual

Get the number of nodes per element.

Parameters
[in]kcell index (not used)
Returns
number of nodes per element

Definition at line 114 of file ElementSubRegionBase.hpp.

◆ SetElementType()

virtual void geosx::ElementSubRegionBase::SetElementType ( string const &  elementType)
virtual

Set the type of element in this subregion.

Parameters
[in]elementTypea string specifying the element type

Reimplemented in geosx::CellBlock.

◆ setNumEdgesPerElement()

void geosx::ElementSubRegionBase::setNumEdgesPerElement ( localIndex const  numEdges)
inline

Set the number of edges per element.

Parameters
[in]numEdgesthe number of edges per element

Definition at line 154 of file ElementSubRegionBase.hpp.

◆ setNumFacesPerElement()

void geosx::ElementSubRegionBase::setNumFacesPerElement ( localIndex const  numFaces)
inline

Set the number of faces per element.

Parameters
[in]numFacesthe number of faces per element

Definition at line 169 of file ElementSubRegionBase.hpp.

◆ setNumIndependentNodesPerElement()

void geosx::ElementSubRegionBase::setNumIndependentNodesPerElement ( localIndex const  numNodes)
inline

Set the number of independent nodes per element.

Parameters
[in]numNodesthe number of independent nodes per element

Definition at line 139 of file ElementSubRegionBase.hpp.

◆ setNumNodesPerElement()

void geosx::ElementSubRegionBase::setNumNodesPerElement ( localIndex  numNodes)
inline

Set the number of nodes per element.

Parameters
[in]numNodesthe number of nodes per element

Definition at line 120 of file ElementSubRegionBase.hpp.

◆ setupRelatedObjectsInRelations()

virtual void geosx::ElementSubRegionBase::setupRelatedObjectsInRelations ( MeshLevel const *const  mesh)
pure virtual

Link the connectivity maps of the subregion to the managers storing the mesh information.

Parameters
[in]meshthe meshLevel object (single level only)

In the derived classes, this function is used to passe a pointer to the nodeManager, faceManager, and (if needed) edgeManager to, respectively, the node list, face list, and edge list of the subregion.

Implemented in geosx::EmbeddedSurfaceSubRegion, geosx::FaceElementSubRegion, geosx::AggregateElementSubRegion, geosx::CellBlock, and geosx::WellElementSubRegion.


The documentation for this class was generated from the following file: