#include <CellBlock.hpp>

Inheritance diagram for geosx::CellBlock:

[legend]

Public Types
using	NodeMapType = InterObjectRelation< array2d< localIndex, cells::NODE_MAP_PERMUTATION > >
	Alias for the type of the element-to-node map.

using	EdgeMapType = FixedOneToManyRelation
	Alias for the type of the element-to-edge map.

using	FaceMapType = FixedOneToManyRelation
	Alias for the type of the element-to-face map.

Public Types inherited from geosx::ObjectManagerBase
using	CatalogInterface = dataRepository::CatalogInterface< ObjectManagerBase, std::string const &, dataRepository::Group *const >
	Nested type for the `factory` pattern, defining the base class (ObjectManagerBase) and the builder arguments (std::string const &, dataRepository::Group * const) of the derived products.

Public Types inherited from geosx::dataRepository::Group
using	subGroupMap = MappedVector< Group, Group *, keyType, indexType >
	The template specialization of MappedVector to use for the collection of sub-Group objects.

using	wrapperMap = MappedVector< WrapperBase, WrapperBase *, keyType, indexType >
	The template specialization of MappedVector to use for the collection wrappers objects.

using	CatalogInterface = dataRepository::CatalogInterface< Group, std::string const &, Group *const >
	Type alias for catalog interface used by this class. See CatalogInterface.

Public Member Functions
Constructor / Destructor
	CellBlock ()=delete
	Deleted default constructor.

	CellBlock (string const &name, Group *const parent)
	Constructor for this class. More...

	CellBlock (const CellBlock &init)=delete
	Copy constructor. More...

virtual	~CellBlock () override
	Destructor.

Geometry computation / Connectivity
virtual void	CalculateElementGeometricQuantities (NodeManager const &nodeManager, FaceManager const &facemanager) override
	Calculate the geometric quantities for each element in the subregion. More...

virtual void	setupRelatedObjectsInRelations (MeshLevel const *const mesh) override
	Link the connectivity maps of the subregion to the managers storing the mesh information. More...

void	calculateElementCenters (arrayView2d< real64 const, nodes::REFERENCE_POSITION_USD > const &X) const
	Compute the center of each element in the subregion. More...

void	CalculateCellVolumesKernel (localIndex const k, arrayView2d< real64 const, nodes::REFERENCE_POSITION_USD > const &X) const
	Compute the volume of the k-th element in the subregion. More...

Getters / Setters
virtual void	SetElementType (string const &elementType) override
	Set the type of element in this subregion. More...

localIndex	GetNumFaceNodes (localIndex const elementIndex, localIndex const localFaceIndex) const
	Get the number of the nodes in a face of the element. More...

localIndex	GetFaceNodes (localIndex const elementIndex, localIndex const localFaceIndex, localIndex *const nodeIndices) const
	Get the local indices of the nodes in a face of the element. More...

void	GetFaceNodes (localIndex const elementIndex, localIndex const localFaceIndex, localIndex_array &nodeIndices) const
	Get the local indices of the nodes in a face of the element. More...

NodeMapType &	nodeList ()
	Get the element-to-node map. More...

NodeMapType const &	nodeList () const
	Get the element-to-node map. More...

localIndex &	nodeList (localIndex const k, localIndex a)
	Get the local index of the a-th node of the k-th element. More...

localIndex const &	nodeList (localIndex const k, localIndex a) const
	Get the local index of the a-th node of the k-th element. More...

FixedOneToManyRelation &	edgeList ()
	Get the element-to-edge map. More...

FixedOneToManyRelation const &	edgeList () const
	Get the element-to-edge map. More...

FixedOneToManyRelation &	faceList ()
	Get the element-to-face map. More...

FixedOneToManyRelation const &	faceList () const
	Get the element-to-face map. More...

Properties
template<typename T >
T &	AddProperty (string const &propertyName)
	Add a property to the CellBlock. More...

template<typename LAMBDA >
void	forExternalProperties (LAMBDA &&lambda)
	Helper function to apply a lambda function over all the external properties of the subregion. More...

Public Member Functions inherited from geosx::ElementSubRegionBase
	ElementSubRegionBase (string const &name, dataRepository::Group *const parent)
	Constructor for this class. More...

	~ElementSubRegionBase ()
	Destructor.

virtual void	FixUpDownMaps (bool const clearIfUnmapped)
	Call ObjectManagerBase::FixUpDownMaps for the connectivity maps needed by the derived class (i.e., element-to-node map, element-to-face map, etc) More...

localIndex const &	numNodesPerElement () const
	Get the number of nodes per element. More...

virtual localIndex	numNodesPerElement (localIndex const k) const
	Get the number of nodes per element. More...

void	setNumNodesPerElement (localIndex numNodes)
	Set the number of nodes per element. More...

localIndex const &	numIndependentNodesPerElement () const
	Get the number of independent nodes per element. More...

void	setNumIndependentNodesPerElement (localIndex const numNodes)
	Set the number of independent nodes per element. More...

localIndex const &	numEdgesPerElement () const
	Get the number of edges per element. More...

void	setNumEdgesPerElement (localIndex const numEdges)
	Set the number of edges per element. More...

localIndex const &	numFacesPerElement () const
	Get the number of faces per element. More...

void	setNumFacesPerElement (localIndex const numFaces)
	Set the number of faces per element. More...

arrayView2d< real64 const >	getElementCenter () const
	Get the center of each element in this subregion. More...

arrayView2d< real64 >	getElementCenter ()
	Get the center of each element in this subregion. More...

arrayView1d< real64 const >	getElementVolume () const
	Get the volume of each element in this subregion. More...

dataRepository::Group const *	GetConstitutiveModels () const
	Get the group in which the constitutive models of this subregion are registered. More...

dataRepository::Group *	GetConstitutiveModels ()
	Get the group in which the constitutive models of this subregion are registered. More...

template<typename T = constitutive::ConstitutiveBase>
T const *	getConstitutiveModel (string const &name) const
	Get a pointer to the constitutive model. More...

template<typename T = constitutive::ConstitutiveBase>
T *	getConstitutiveModel (string const &name)
	Get a pointer to the constitutive model. More...

virtual string	GetElementTypeString () const
	Get the type of element in this subregion. More...

std::vector< int >	getVTKNodeOrdering () const
	Get the VTK ordering for this subregion. More...

Public Member Functions inherited from geosx::ObjectManagerBase
	ObjectManagerBase (std::string const &name, dataRepository::Group *const parent)
	Constructor. More...

	~ObjectManagerBase () override
	Destructor.

virtual localIndex	PackSize (string_array const &wrapperNames, arrayView1d< localIndex const > const &packList, integer const recursive, bool on_device=false) const override
	Get the size required to pack a list of indices within a list of wrappers. More...

virtual localIndex	Pack (buffer_unit_type *&buffer, string_array const &wrapperNames, arrayView1d< localIndex const > const &packList, integer const recursive, bool on_device=false) const override
	Pack a list of indices within a list of wrappers. More...

virtual localIndex	Unpack (buffer_unit_type const *&buffer, arrayView1d< localIndex > &packList, integer const recursive, bool on_device=false) override
	Unpack a buffer. More...

template<bool DOPACK>
localIndex	PackSets (buffer_unit_type *&buffer, arrayView1d< localIndex const > const &packList) const
	Packs the elements of each set that actually are in `packList`. More...

localIndex	UnpackSets (buffer_unit_type const *&buffer)
	Unpack the content of `buffer` into the sets of the instance. More...

virtual void	ViewPackingExclusionList (SortedArray< localIndex > &exclusionList) const
	Inserts in `exclusionList` the data that shall not be packed. More...

virtual localIndex	PackGlobalMapsSize (arrayView1d< localIndex const > const &packList, integer const recursive) const
	Computes the pack size of the global maps elements in the @ packList. More...

virtual localIndex	PackGlobalMaps (buffer_unit_type *&buffer, arrayView1d< localIndex const > const &packList, integer const recursive) const
	Packs the global maps elements in the @ packList. More...

void	SetReceiveLists ()
	Clear and redefines the ghosts to receive.

virtual localIndex	PackUpDownMapsSize (arrayView1d< localIndex const > const &packList) const
	Computes the pack size of the specific elements in the @ packList. More...

virtual localIndex	PackUpDownMaps (buffer_unit_type *&buffer, arrayView1d< localIndex const > const &packList) const
	Packs the specific elements in the @ packList. More...

virtual localIndex	UnpackUpDownMaps (buffer_unit_type const *&buffer, array1d< localIndex > &packList, bool const overwriteUpMaps, bool const overwriteDownMaps)
	Unpacks the specific elements in the @ packList. More...

virtual localIndex	UnpackGlobalMaps (buffer_unit_type const *&buffer, localIndex_array &packList, integer const recursive)
	Unpacks the global maps from `buffer`. More...

localIndex	PackParentChildMapsSize (arrayView1d< localIndex const > const &packList) const
	Computes the pack size of the parent/child relations in `packList`. More...

localIndex	PackParentChildMaps (buffer_unit_type *&buffer, arrayView1d< localIndex const > const &packList) const
	Packs the parent/child relations in `packList`. More...

localIndex	UnpackParentChildMaps (buffer_unit_type const *&buffer, localIndex_array &packList)
	Unacks the parent/child relations in `packList`. More...

void	moveSets (LvArray::MemorySpace const targetSpace)
	Manually move all sets to a memory space. More...

localIndex	resize (localIndex const newSize, const bool)
	Resize the group and all contained wrappers that resize with parent. More...

void	CreateSet (const std::string &newSetName)
	Creates a new set. More...

void	ConstructSetFromSetAndMap (SortedArrayView< localIndex const > const &inputSet, const array2d< localIndex > &map, const std::string &setName)
	Builds a new set on this instance given another objects set and the map between them. More...

void	ConstructSetFromSetAndMap (SortedArrayView< localIndex const > const &inputSet, const array1d< localIndex_array > &map, const std::string &setName)
	Builds a new set on this instance given another objects set and the map between them. More...

void	ConstructSetFromSetAndMap (SortedArrayView< localIndex const > const &inputSet, ArrayOfArraysView< localIndex const > const &map, const std::string &setName)
	Builds a new set on this instance given another objects set and the map between them. More...

void	ConstructGlobalToLocalMap ()
	Constructs the global to local map.

void	ConstructLocalListOfBoundaryObjects (localIndex_array &objectList) const
	Computes the (local) index list that are domain boundaries. More...

void	ConstructGlobalListOfBoundaryObjects (globalIndex_array &objectList) const
	Computes the (global) index list that are domain boundaries. More...

virtual void	ExtractMapFromObjectForAssignGlobalIndexNumbers (ObjectManagerBase const *const obj, std::vector< std::vector< globalIndex > > &map)
	Extract map from object and assign global indices. More...

void	SetGhostRankForSenders (int const neighborRank)
	Defines `neighborRank` ownership for ghost objects. More...

localIndex	GetNumberOfGhosts () const
	Get the number of ghost objects. More...

localIndex	GetNumberOfLocalIndices () const
	Get the number of locally owned objects. More...

integer	SplitObject (localIndex const indexToSplit, int const rank, localIndex &newIndex)
	Split object to deal with topology changes. More...

void	inheritGhostRankFromParent (std::set< localIndex > const &indices)
	sets the value of m_ghostRank to the value of the objects parent. More...

void	CopyObject (localIndex const source, localIndex const destination)
	Copy object from `source` to @ destination. More...

void	SetMaxGlobalIndex ()
	Computes the maximum global index allong all the MPI ranks.

virtual void	enforceStateFieldConsistencyPostTopologyChange (std::set< localIndex > const &targetIndices)
	Updates the child and target indices after a topology change. More...

template<typename MESH_DATA_TRAIT >
dataRepository::Wrapper< typename MESH_DATA_TRAIT::type > &	registerExtrinsicData (string const &nameOfRegisteringObject)
	Register data with this ObjectManagerBase using a dataRepository::Wrapper. More...

template<typename MESH_DATA_TRAIT0 , typename MESH_DATA_TRAIT1 , typename ... MESH_DATA_TRAITS>
void	registerExtrinsicData (string const &nameOfRegisteringObject)
	Register a collection of data with this ObjectManagerBase using a dataRepository::Wrapper. More...

template<typename MESH_DATA_TRAIT >
GEOSX_DECLTYPE_AUTO_RETURN	getExtrinsicData () const
	Get a view to the data associated with a trait from this ObjectManagerBase. More...

template<typename MESH_DATA_TRAIT >
GEOSX_DECLTYPE_AUTO_RETURN	getExtrinsicData ()
	Get the data associated with a trait from this ObjectManagerBase. More...

template<typename MESH_DATA_TRAIT >
bool	hasExtrinsicData () const
	Checks if an extrinsic data has been registered. More...

virtual viewKeyStruct &	viewKeys ()
	Get the view keys for Group access. More...

virtual viewKeyStruct const &	viewKeys () const
	Get the view keys for Group access, const version. More...

virtual groupKeyStruct &	groupKeys ()
	Get the group keys for Group access. More...

virtual groupKeyStruct const &	groupKeys () const
	Get the group keys for Group access, const version. More...

Group &	sets ()
	Get the group holding the object sets. More...

Group const &	sets () const
	Get the group holding the object sets, const version. More...

SortedArray< localIndex > &	externalSet ()
	Get the external set. More...

SortedArrayView< localIndex const >	externalSet () const
	Get the external set, const version. More...

void	updateGlobalToLocalMap (localIndex const lid)
	Updates (if needed) the global index for local index `lid`. More...

arrayView1d< globalIndex >	localToGlobalMap ()
	Get local to global map. More...

arrayView1d< globalIndex const >	localToGlobalMap () const
	Get local to global map, const version. More...

unordered_map< globalIndex, localIndex > const &	globalToLocalMap () const
	Get global to local map. More...

localIndex	globalToLocalMap (globalIndex const gid) const
	Retrieves the local index for given global index. More...

array1d< integer > const &	isExternal ()
	Get the locality information of the objects. More...

arrayView1d< integer const >	isExternal () const
	Get the locality information of the objects. More...

array1d< integer > const &	ghostRank ()
	Get the ghost information of each object. More...

arrayView1d< integer const >	ghostRank () const
	Get the ghost information of each object, const version. More...

NeighborData &	getNeighborData (int const rank)
	Get neighbor data for given `rank`. More...

NeighborData const &	getNeighborData (int const rank) const
	Get neighbor data for given `rank`, const version. More...

void	addNeighbor (int const rank)
	Add a neighbor for `rank`. More...

void	removeNeighbor (int const rank)
	Remove neighbor for `rank`. More...

globalIndex	maxGlobalIndex () const
	Get the maximum global index of all objects across all rank. See. More...

arrayView1d< integer >	getDomainBoundaryIndicator ()
	Get the domain boundary indicator. More...

arrayView1d< integer const >	getDomainBoundaryIndicator () const
	Get the domain boundary indicator. More...

Public Member Functions inherited from geosx::dataRepository::Group
	Group (std::string const &name, Group *const parent)
	Constructor. More...

	Group (Group &&source)
	Move constructor. More...

virtual	~Group ()
	Destructor, deletes all Groups and Wrappers owned by this Group.

	Group ()=delete
	Deleted default constructor.

	Group (Group const &)=delete
	Deleted copy constructor.

	Group (Group const &&)=delete
	Deleted move constructor.

Group &	operator= (Group const &)=delete
	Deleted copy assignment operator. More...

Group &	operator= (Group &&)=delete
	Deleted move assignment operator. More...

virtual const std::type_info &	get_typeid () const
	Get typeid for current group. More...

bool	CheckTypeID (std::type_info const &typeToCheck) const
	Check a type_info against the type_info of this Group. More...

void	PrintDataHierarchy (integer indent=0)
	Prints the data hierarchy recursively. More...

string	dumpInputOptions () const

template<typename T = Group>
T *	RegisterGroup (std::string const &name, std::unique_ptr< T > newObject)
	Register a new Group as a sub-group of current Group. More...

template<typename T = Group>
T *	RegisterGroup (std::string const &name, T *newObject)
	Register a new Group as a sub-group of current Group. More...

template<typename T = Group>
T *	RegisterGroup (std::string const &name)
	Register a new Group as a sub-group of current Group. More...

template<typename T = Group>
T *	RegisterGroup (subGroupMap::KeyIndex const &keyIndex)
	Register a new Group as a sub-group of current Group. More...

template<typename T = Group, typename TBASE = Group>
T *	RegisterGroup (std::string const &name, std::string const &catalogName)
	Register a new Group as a sub-group of current Group. More...

void	deregisterGroup (std::string const &name)
	Removes a child group from this group. More...

virtual Group *	CreateChild (string const &childKey, string const &childName)
	Creates a new sub-Group using the ObjectCatalog functionality. More...

template<typename T = Group>
T *	GetGroup (localIndex index)
	Retrieve a sub-group from the current Group using an index. More...

template<typename T = Group>
T const *	GetGroup (localIndex index) const
	Retrieve a sub-group from the current Group using an index. More...

template<typename T = Group>
T *	GetGroup (string const &name)
	Retrieve a sub-group from the current Group using a string. More...

template<typename T = Group>
T const *	GetGroup (string const &name) const
	Retrieve a sub-group from the current Group using a string. More...

template<typename T = Group>
T &	getGroupReference (string const &key)

template<typename T = Group>
T const &	getGroupReference (string const &key) const

template<typename T = Group>
T &	GetGroupReference (subGroupMap::KeyIndex const &key)

template<typename T = Group>
T const &	GetGroupReference (subGroupMap::KeyIndex const &key) const

template<typename T = Group>
T *	GetGroup (subGroupMap::KeyIndex const &key)
	Retrieve a sub-group from the current Group using a KeyIndexT. More...

template<typename T = Group>
T const *	GetGroup (subGroupMap::KeyIndex const &key) const
	Retrieve a sub-group from the current Group using a KeyIndexT. More...

template<typename T = Group>
T *	GetGroupByPath (string const &path)
	Retrieve a group from the hierarchy using a path. More...

template<typename T = Group>
T const *	GetGroupByPath (string const &path) const
	Retrieve a group from the hierarchy using a path. More...

subGroupMap &	GetSubGroups ()
	Get the subgroups object. More...

subGroupMap const &	GetSubGroups () const
	Get the subgroups object. More...

localIndex	numSubGroups () const
	return the number of sub groups in this Group More...

bool	hasGroup (std::string const &name) const
	Check whether a sub-group exists. More...

template<typename GROUPTYPE = Group, typename ... GROUPTYPES, typename LAMBDA >
void	forSubGroups (LAMBDA lambda)
	Apply the given functor to subgroups that can be casted to one of specified types. More...

template<typename GROUPTYPE = Group, typename ... GROUPTYPES, typename LAMBDA >
void	forSubGroups (LAMBDA lambda) const
	Apply the given functor to subgroups that can be casted to one of specified types. More...

template<typename GROUPTYPE = Group, typename ... GROUPTYPES, typename LOOKUP_CONTAINER , typename LAMBDA >
void	forSubGroups (LOOKUP_CONTAINER const &subGroupKeys, LAMBDA lambda)

template<typename GROUPTYPE = Group, typename ... GROUPTYPES, typename LOOKUP_CONTAINER , typename LAMBDA >
void	forSubGroups (LOOKUP_CONTAINER const &subGroupKeys, LAMBDA lambda) const

template<typename LAMBDA >
void	forWrappers (LAMBDA lambda)
	Apply the given functor to wrappers. More...

template<typename LAMBDA >
void	forWrappers (LAMBDA lambda) const
	Apply the given functor to wrappers. More...

template<typename TYPE , typename ... TYPES, typename LAMBDA >
void	forWrappers (LAMBDA lambda)
	Apply the given functor to wrappers that can be cast to one of specified types. More...

template<typename TYPE , typename ... TYPES, typename LAMBDA >
void	forWrappers (LAMBDA lambda) const
	Apply the given functor to wrappers that can be cast to one of specified types. More...

void	Initialize (Group *const group)
	Run initialization functions on this and all subgroups. More...

virtual void	InitializationOrder (string_array &order)
	Sets the initialization order for sub-Groups. More...

void	InitializePostInitialConditions (Group *const group)
	Initialization routine to be called after calling ApplyInitialConditions(). More...

void	postRestartInitializationRecursive (Group *const domain)
	Initialization routine to be called after calling reading a restart file. More...

void	ProcessInputFileRecursive (xmlWrapper::xmlNode &targetNode)
	Recursively read values using ProcessInputFile() from the input file and put them into the wrapped values for this group. More...

void	PostProcessInputRecursive ()
	Recursively call PostProcessInput() to apply post processing after reading input values.

template<typename T , typename TBASE = T>
Wrapper< TBASE > *	registerWrapper (std::string const &name, wrapperMap::KeyIndex::index_type *const rkey=nullptr)
	Create and register a Wrapper around a new object. More...

template<typename T , typename TBASE = T>
Wrapper< TBASE > *	registerWrapper (Group::wrapperMap::KeyIndex const &viewKey)

template<typename T >
Wrapper< T > *	registerWrapper (std::string const &name, std::unique_ptr< T > newObject)
	Register a Wrapper around a given object and take ownership. More...

template<typename T >
Wrapper< T > *	registerWrapper (std::string const &name, T *newObject)
	Register a Wrapper around an existing object, does not take ownership of the object. More...

WrapperBase *	registerWrapper (string const &name, std::unique_ptr< WrapperBase > wrapper)
	Register and take ownership of an existing Wrapper. More...

void	deregisterWrapper (string const &name)
	Removes a Wrapper from this group. More...

void	GenerateDataStructureSkeleton (integer const level)
	Build a complete datastructure for schema generation. More...

virtual void	ExpandObjectCatalogs ()
	Expand any catalogs in the data structure.

virtual void	SetSchemaDeviations (xmlWrapper::xmlNode schemaRoot, xmlWrapper::xmlNode schemaParent, integer documentationType)
	Inform the schema generator of any deviations between the xml and GEOS data structures. More...

virtual void	RegisterDataOnMeshRecursive (Group *const meshBodies)
	Calls RegisterDataOnMesh() recursively. More...

virtual void	RegisterDataOnMesh (Group *const meshBodies)
	Register data on mesh entities. More...

virtual localIndex	PackSize (string_array const &wrapperNames, integer const recursive, bool on_device=false) const
	Get the size required to pack a list of wrappers. More...

virtual localIndex	Pack (buffer_unit_type *&buffer, string_array const &wrapperNames, integer const recursive, bool on_device=false) const
	Pack a list of wrappers to a buffer. More...

WrapperBase const *	getWrapperBase (indexType const index) const
	Retrieve a WrapperBase stored in this group. More...

WrapperBase *	getWrapperBase (indexType const index)
	Retrieve a WrapperBase stored in this group. More...

WrapperBase const *	getWrapperBase (std::string const &name) const
	Retrieve a WrapperBase stored in this group. More...

WrapperBase *	getWrapperBase (std::string const &name)
	Retrieve a WrapperBase stored in this group. More...

WrapperBase const *	getWrapperBase (wrapperMap::KeyIndex const &keyIndex) const
	Retrieve a WrapperBase stored in this group. More...

WrapperBase *	getWrapperBase (wrapperMap::KeyIndex const &keyIndex)
	Retrieve a WrapperBase stored in this group. More...

indexType	getWrapperIndex (std::string const &name) const

wrapperMap const &	wrappers () const
	Get access to the internal wrapper storage. More...

wrapperMap &	wrappers ()
	Get access to the internal wrapper storage. More...

template<typename LOOKUP_TYPE >
bool	hasWrapper (LOOKUP_TYPE const &lookup) const
	Check if a wrapper exists. More...

template<typename T , typename LOOKUP_TYPE >
Wrapper< T > const *	getWrapper (LOOKUP_TYPE const &index) const
	Retrieve a Wrapper stored in this group. More...

template<typename T , typename LOOKUP_TYPE >
Wrapper< T > *	getWrapper (LOOKUP_TYPE const &index)
	Retrieve a Wrapper stored in this group. More...

template<typename T >
Wrapper< T > const *	getWrapper (char const *const key) const
	Retrieve a Wrapper stored in this group. More...

template<typename T >
Wrapper< T > *	getWrapper (char const *const key)
	Retrieve a Wrapper stored in this group. More...

template<typename T , typename LOOKUP_TYPE >
GEOSX_DECLTYPE_AUTO_RETURN	getReference (LOOKUP_TYPE const &lookup) const
	Look up a wrapper and get reference to wrapped object. More...

template<typename T , typename LOOKUP_TYPE >
T &	getReference (LOOKUP_TYPE const &lookup)
	Look up a wrapper and get reference to wrapped object. More...

template<typename T >
GEOSX_DECLTYPE_AUTO_RETURN	getReference (char const *const name) const

template<typename T >
T &	getReference (char const *const name)

virtual void	resize (localIndex const newSize)
	Resize the group and all contained wrappers that resize with parent. More...

virtual void	reserve (indexType const newsize)
	Set the new capacity and reserve it in all wrappers that resize with parent. More...

localIndex	capacity () const
	Get the "capacity" of the group, which determines the capacity of resizable wrappers. More...

localIndex	size () const
	Get the "size" of the group, which determines the number of elements in resizable wrappers. More...

const string	getName () const
	Get group name. More...

Group *	getParent ()
	Access the group's parent. More...

Group const *	getParent () const
	Access the group's parent. More...

localIndex	getIndexInParent () const
	Get the group's index withing its parent group. More...

integer	sizedFromParent () const
	Check whether this Group is resized when its parent is resized. More...

Group *	setSizedFromParent (int val)
	Set whether this wrapper is resized when its parent is resized. More...

RestartFlags	getRestartFlags () const
	Get flags that control restart output of this group. More...

void	setRestartFlags (RestartFlags flags)
	Set flags that control restart output of this group. More...

InputFlags	getInputFlags () const
	Get input flags for schema generation. More...

void	setInputFlags (InputFlags flags)
	Set input flags for schema generation. More...

conduit::Node &	getConduitNode ()
	Get the Conduit node object associated with this group. More...

void	prepareToWrite ()
	Register the group and its wrappers with Conduit.

void	finishWriting ()
	Write the group and its wrappers into Conduit.

void	loadFromConduit ()
	Read the group and its wrappers from Conduit.

void	enableLogLevelInput ()
	Enable verbosity input for object.

integer	getLogLevel () const

template<typename T >
T	group_cast ()
	Downcast this Group. More...

template<typename T >
T	group_cast () const
	Downcast this Group. More...

Protected Attributes
NodeMapType	m_toNodesRelation
	Element-to-node relation.

EdgeMapType	m_toEdgesRelation
	Element-to-edge relation.

FaceMapType	m_toFacesRelation
	Element-to-face relation.

Protected Attributes inherited from geosx::ElementSubRegionBase
localIndex	m_numNodesPerElement
	Number of nodes per element in this subregion.

localIndex	m_numIndependentNodesPerElement
	Number of independent nodes per element in this subregion.

localIndex	m_numEdgesPerElement
	Number of edges per element in this subregion.

localIndex	m_numFacesPerElement
	Number of faces per element in this subregion.

array2d< real64 >	m_elementCenter
	Member level field for the element center.

array1d< real64 >	m_elementVolume
	Member level field for the element volume.

string	m_elementTypeString
	Type of element in this subregion.

Protected Attributes inherited from geosx::ObjectManagerBase
Group	m_sets
	Group that holds object sets.

Group	m_neighborGroup
	Group that holds all the NeighborData objects.

array1d< globalIndex >	m_localToGlobalMap
	Contains the global index of each object.

unordered_map< globalIndex, localIndex >	m_globalToLocalMap
	Map from object global index to the local index.

array1d< integer >	m_isExternal
	Array that holds if an object is external.

array1d< integer >	m_domainBoundaryIndicator
	Domain boundary indicator: 1 means the "index" is on the boundary.

array1d< integer >	m_ghostRank
	Array that holds the ghost information about each object. More...

unordered_map< int, NeighborData >	m_neighborData
	A map from rank to the associated NeighborData object.

real64	m_overAllocationFactor = 1.1
	Factor by which to overallocate when adding objects.

globalIndex	m_maxGlobalIndex = -1
	The maximum global index of all objects across all rank.

globalIndex	m_localMaxGlobalIndex = -1
	The maximum global index of any object of all objects on this rank.

Static factory catalog functions
static const string	CatalogName ()
	Const getter for the catalog name. More...

virtual const string	getCatalogName () const override final
	Const getter for the catalog name. More...

Additional Inherited Members
Static Public Member Functions inherited from geosx::ObjectManagerBase
template<typename TYPE_RELATION >
static void	FixUpDownMaps (TYPE_RELATION &relation, map< localIndex, array1d< globalIndex > > &unmappedIndices, bool const clearIfUnmapped)
	Fixing the up/down maps by mapping the unmapped indices. More...

template<typename TYPE_RELATION >
static void	FixUpDownMaps (TYPE_RELATION &relation, map< localIndex, SortedArray< globalIndex > > &unmappedIndices, bool const clearIfUnmapped)
	Fixing the up/down maps by mapping the unmapped indices. More...

static void	FixUpDownMaps (ArrayOfSets< localIndex > &relation, unordered_map< globalIndex, localIndex > const &globalToLocal, map< localIndex, SortedArray< globalIndex > > &unmappedIndices, bool const clearIfUnmapped)
	Fixing the up/down maps by mapping the unmapped indices. More...

static void	CleanUpMap (std::set< localIndex > const &targetIndices, array1d< SortedArray< localIndex > > &upmap, arrayView2d< localIndex const > const &downmap)
	Removes from the list of arrays of `upmap` all the elements for which the "mirror target array" of `downmap` does not contain the proper target index. More...

static void	CleanUpMap (std::set< localIndex > const &targetIndices, ArrayOfSetsView< localIndex > const &upmap, arrayView2d< localIndex const > const &downmap)
	Removes from the list of sets of `upmap` all the elements for which the "mirror target array" of `downmap` does not contain the proper target index. More...

static void	CleanUpMap (std::set< localIndex > const &targetIndices, array1d< SortedArray< localIndex > > &upmap, arrayView1d< arrayView1d< localIndex const > const > const &downmap)
	Removes from the list of arrays of `upmap` all the elements for which the "mirror target array" of `downmap` does not contain the proper target index. More...

static void	CleanUpMap (std::set< localIndex > const &targetIndices, ArrayOfSetsView< localIndex > const &upmap, arrayView1d< arrayView1d< localIndex const > const > const &downmap)
	Removes from the list of sets of `upmap` all the elements for which the "mirror target array" of `downmap` does not contain the proper target index. More...

static void	CleanUpMap (std::set< localIndex > const &targetIndices, ArrayOfSetsView< localIndex > const &upmap, ArrayOfArraysView< localIndex const > const &downmap)
	Removes from the list of sets of `upmap` all the elements for which the "mirror target array" of `downmap` does not contain the proper target index. More...

static localIndex	GetParentRecusive (arraySlice1d< localIndex const > const &parentIndices, localIndex const lookup)
	Get the upmost parent. More...

static CatalogInterface::CatalogType &	GetCatalog ()
	Acessing the unique instance of this catalog. More...

Static Public Member Functions inherited from geosx::dataRepository::Group
template<typename T0 , typename T1 , typename ... CASTTYPES, typename CONTAINERTYPE , typename LAMBDA >
static bool	applyLambdaToContainer (CONTAINERTYPE &container, LAMBDA &&lambda)
	Apply a given functor to a container if the container can be cast to one of the specified types. More...

static CatalogInterface::CatalogType &	GetCatalog ()
	Get the singleton catalog for this class. More...

template<typename T >
static T	group_cast (Group *group)
	Downcast a Group *. More...

template<typename T >
static T	group_cast (Group const *group)
	Downcast a Group const *. More...

Public Attributes inherited from geosx::ObjectManagerBase
struct geosx::ObjectManagerBase::viewKeyStruct	m_ObjectManagerBaseViewKeys
	viewKey struct for the ObjectManagerBase class

struct geosx::ObjectManagerBase::groupKeyStruct	m_ObjectManagerBaseGroupKeys
	groupKey struct for the ObjectManagerBase class

Protected Member Functions inherited from geosx::dataRepository::Group
virtual void	PostProcessInput ()

virtual void	InitializePreSubGroups (Group *const group)
	Called by Initialize() prior to initializing sub-Groups. More...

virtual void	InitializePostSubGroups (Group *const group)
	Called by Initialize() after to initializing sub-Groups. More...

virtual void	InitializePostInitialConditions_PreSubGroups (Group *const group)
	Called by InitializePostInitialConditions() prior to initializing sub-Groups. More...

virtual void	InitializePostInitialConditions_PostSubGroups (Group *const group)
	Called by InitializePostInitialConditions() after to initializing sub-Groups. More...

virtual void	postRestartInitialization (Group *const domain)
	Performs initialization required after reading from a restart file. More...

Detailed Description

Class deriving from ElementSubRegionBase specializing the element subregion for a cell element. In particular, this class adds connectivity maps (namely, element-to-node map, element-to-face map, and element-to-edge map) and and methods to compute the geometry of an element (cell center and volume)

Definition at line 40 of file CellBlock.hpp.

Constructor & Destructor Documentation

◆ CellBlock() [1/2]

geosx::CellBlock::CellBlock	(	string const &	name,
		Group *const	parent
	)

Constructor for this class.

Parameters

[in]	name	the name of this object manager
[in]	parent	the parent Group

◆ CellBlock() [2/2]

geosx::CellBlock::CellBlock ( const CellBlock & init )

delete

Copy constructor.

Parameters

[in] init the source to copy

Member Function Documentation

◆ AddProperty()

template<typename T >

T& geosx::CellBlock::AddProperty ( string const & propertyName )

inline

Add a property to the CellBlock.

Template Parameters

T	type of the property

Parameters

[in] propertyName the name of the property

Returns: a non-const reference to the property

Definition at line 274 of file CellBlock.hpp.

◆ CalculateCellVolumesKernel()

void geosx::CellBlock::CalculateCellVolumesKernel	(	localIndex const	k,
		arrayView2d< real64 const, nodes::REFERENCE_POSITION_USD > const &	X
	)		const

inline

Compute the volume of the k-th element in the subregion.

Parameters

[in]	k	the index of the element in the subregion
[in]	X	an arrayView of (const) node positions

Definition at line 137 of file CellBlock.hpp.

◆ calculateElementCenters()

void geosx::CellBlock::calculateElementCenters ( arrayView2d< real64 const, nodes::REFERENCE_POSITION_USD > const & X ) const

inline

Compute the center of each element in the subregion.

Parameters

[in] X an arrayView of (const) node positions

Definition at line 115 of file CellBlock.hpp.

◆ CalculateElementGeometricQuantities()

virtual void geosx::CellBlock::CalculateElementGeometricQuantities	(	NodeManager const &	nodeManager,
		FaceManager const &	faceManager
	)

overridevirtual

Calculate the geometric quantities for each element in the subregion.

Parameters

[in]	nodeManager	the nodeManager (for geometrical info and connectivity involving nodes)
[in]	faceManager	the faceManager (for geometrical info and connectivity involving faces)

Implements geosx::ElementSubRegionBase.

◆ CatalogName()

static const string geosx::CellBlock::CatalogName ( )

inlinestatic

Const getter for the catalog name.

Returns: the name of this type in the catalog

Definition at line 60 of file CellBlock.hpp.

◆ edgeList() [1/2]

FixedOneToManyRelation& geosx::CellBlock::edgeList ( )

inline

Get the element-to-edge map.

Returns: a reference to element-to-edge map

Definition at line 242 of file CellBlock.hpp.

◆ edgeList() [2/2]

FixedOneToManyRelation const& geosx::CellBlock::edgeList ( ) const

inline

Get the element-to-edge map.

Returns: a reference to element-to-edge map

Definition at line 247 of file CellBlock.hpp.

◆ faceList() [1/2]

FixedOneToManyRelation& geosx::CellBlock::faceList ( )

inline

Get the element-to-face map.

Returns: a reference to the element to face map

Definition at line 253 of file CellBlock.hpp.

◆ faceList() [2/2]

FixedOneToManyRelation const& geosx::CellBlock::faceList ( ) const

inline

Get the element-to-face map.

Returns: a reference to the element to face map

Definition at line 258 of file CellBlock.hpp.

◆ forExternalProperties()

template<typename LAMBDA >

void geosx::CellBlock::forExternalProperties ( LAMBDA && lambda )

inline

Helper function to apply a lambda function over all the external properties of the subregion.

Template Parameters

LAMBDA the type of the lambda function

Parameters

lambda lambda function that is applied to the wrappers of external properties

Definition at line 286 of file CellBlock.hpp.

◆ getCatalogName()

virtual const string geosx::CellBlock::getCatalogName ( ) const

inlinefinaloverridevirtual

Const getter for the catalog name.

Returns: the name of this type in the catalog

Implements geosx::ObjectManagerBase.

Definition at line 66 of file CellBlock.hpp.

◆ GetFaceNodes() [1/2]

localIndex geosx::CellBlock::GetFaceNodes	(	localIndex const	elementIndex,
		localIndex const	localFaceIndex,
		localIndex *const	nodeIndices
	)		const

Get the local indices of the nodes in a face of the element.

Parameters

elementIndex	the local index of the target element
localFaceIndex	the local index of the target face in the element (this will be 0-numFacesInElement)
nodeIndices	a pointer to the node indices of the face

Returns: the number of nodes in the face

◆ GetFaceNodes() [2/2]

void geosx::CellBlock::GetFaceNodes	(	localIndex const	elementIndex,
		localIndex const	localFaceIndex,
		localIndex_array &	nodeIndices
	)		const

Get the local indices of the nodes in a face of the element.

Parameters

elementIndex	the local index of the target element
localFaceIndex	the local index of the target face in the element (this will be 0-numFacesInElement)
nodeIndices	a reference to the array of node indices of the face

◆ GetNumFaceNodes()

localIndex geosx::CellBlock::GetNumFaceNodes	(	localIndex const	elementIndex,
		localIndex const	localFaceIndex
	)		const

Get the number of the nodes in a face of the element.

Parameters

elementIndex	the local index of the target element
localFaceIndex	the local index of the target face in the element (this will be 0-numFacesInElement)

Returns: the number of nodes of this face

◆ nodeList() [1/4]

NodeMapType& geosx::CellBlock::nodeList ( )

inline

Get the element-to-node map.

Returns: a reference to the element-to-node map

Definition at line 218 of file CellBlock.hpp.

◆ nodeList() [2/4]

NodeMapType const& geosx::CellBlock::nodeList ( ) const

inline

Get the element-to-node map.

Returns: a reference to the element-to-node map

Definition at line 223 of file CellBlock.hpp.

◆ nodeList() [3/4]

localIndex& geosx::CellBlock::nodeList	(	localIndex const	k,
		localIndex	a
	)

inline

Get the local index of the a-th node of the k-th element.

Parameters

[in]	k	the index of the element
[in]	a	the index of the node in the element

Returns: a reference to the local index of the node

Definition at line 231 of file CellBlock.hpp.

◆ nodeList() [4/4]

localIndex const& geosx::CellBlock::nodeList	(	localIndex const	k,
		localIndex	a
	)		const

inline

Get the local index of the a-th node of the k-th element.

Parameters

[in]	k	the index of the element
[in]	a	the index of the node in the element

Returns: a reference to the local index of the node

Definition at line 236 of file CellBlock.hpp.

◆ SetElementType()

virtual void geosx::CellBlock::SetElementType ( string const & elementType )

overridevirtual

Set the type of element in this subregion.

Parameters

[in] elementType a string specifying the element type

Reimplemented from geosx::ElementSubRegionBase.

◆ setupRelatedObjectsInRelations()

virtual void geosx::CellBlock::setupRelatedObjectsInRelations ( MeshLevel const *const mesh )

overridevirtual

Link the connectivity maps of the subregion to the managers storing the mesh information.

Parameters

[in] mesh the meshLevel object (single level only)

In the derived classes, this function is used to passe a pointer to the nodeManager, faceManager, and (if needed) edgeManager to, respectively, the node list, face list, and edge list of the subregion.

Implements geosx::ElementSubRegionBase.

The documentation for this class was generated from the following file:

coreComponents/mesh/CellBlock.hpp

Public Types

Public Member Functions

Protected Attributes

Static factory catalog functions

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

◆ CellBlock() [1/2]

◆ CellBlock() [2/2]

Member Function Documentation

◆ AddProperty()

◆ CalculateCellVolumesKernel()

◆ calculateElementCenters()

◆ CalculateElementGeometricQuantities()

◆ CatalogName()

◆ edgeList() [1/2]

◆ edgeList() [2/2]

◆ faceList() [1/2]

◆ faceList() [2/2]

◆ forExternalProperties()

◆ getCatalogName()

◆ GetFaceNodes() [1/2]

◆ GetFaceNodes() [2/2]

◆ GetNumFaceNodes()

◆ nodeList() [1/4]

◆ nodeList() [2/4]

◆ nodeList() [3/4]

◆ nodeList() [4/4]

◆ SetElementType()

◆ setupRelatedObjectsInRelations()