#include <EmbeddedSurfaceSubRegion.hpp>

Inheritance diagram for geosx::EmbeddedSurfaceSubRegion:

[legend]

Classes
struct	viewKeyStruct
	Struct containing the keys to all embedded surface element views. More...

Public Types
using	FaceMapType = FixedOneToManyRelation
	Embedded surface element to faces map type.

Public Types inherited from geosx::SurfaceElementSubRegion
using	NodeMapType = InterObjectRelation< ArrayOfArrays< localIndex > >
	Surface element to nodes map type.

using	EdgeMapType = InterObjectRelation< ArrayOfArrays< localIndex > >
	Surface element to edges map type.

Public Types inherited from geosx::ObjectManagerBase
using	CatalogInterface = dataRepository::CatalogInterface< ObjectManagerBase, std::string const &, dataRepository::Group *const >
	Nested type for the `factory` pattern, defining the base class (ObjectManagerBase) and the builder arguments (std::string const &, dataRepository::Group * const) of the derived products.

Public Types inherited from geosx::dataRepository::Group
using	subGroupMap = MappedVector< Group, Group *, keyType, indexType >
	The template specialization of MappedVector to use for the collection of sub-Group objects.

using	wrapperMap = MappedVector< WrapperBase, WrapperBase *, keyType, indexType >
	The template specialization of MappedVector to use for the collection wrappers objects.

using	CatalogInterface = dataRepository::CatalogInterface< Group, std::string const &, Group *const >
	Type alias for catalog interface used by this class. See CatalogInterface.

Public Member Functions
virtual void	setupRelatedObjectsInRelations (MeshLevel const *const mesh) override
	Link the connectivity maps of the subregion to the managers storing the mesh information. More...

virtual string	GetElementTypeString () const override final
	Get the type of element in this subregion. More...

Constructor / Destructor
	EmbeddedSurfaceSubRegion (string const &name, dataRepository::Group *const parent)
	Constructor. More...

virtual	~EmbeddedSurfaceSubRegion () override
	Destructor.

Geometry computation / Connectivity
virtual void	CalculateElementGeometricQuantities (NodeManager const &nodeManager, FaceManager const &facemanager) override
	Calculate the geometric quantities for each element in the subregion. More...

void	CalculateElementGeometricQuantities (arrayView2d< real64 const > const intersectionPoints, localIndex k)
	Function to compute the geometric quantities of a specific embedded surface element. More...

bool	AddNewEmbeddedSurface (localIndex const cellIndex, localIndex const regionIndex, localIndex const subRegionIndex, NodeManager &nodeManager, EdgeManager const &edgeManager, FixedOneToManyRelation const &cellToEdges, BoundedPlane const *fracture)
	Function to add a new embedded surface element. More...

void	inheritGhostRank (array1d< array1d< arrayView1d< integer const > > > const &cellGhostRank)
	inherit ghost rank from cell elements. More...

real64	ComputeHeavisideFunction (ArraySlice< real64 const, 1, nodes::REFERENCE_POSITION_USD - 1 > const nodeCoord, localIndex const k) const
	Given the coordinates of a node, it computes the Heaviside function iside a cut element with respect to the fracture element. More...

Properties Getters
Getters to embedded surface elements properties.
localIndex &	numOfJumpEnrichments ()
	Get number of jump enrichments. More...

localIndex const &	numOfJumpEnrichments () const
	Get number of jump enrichments. More...

array2d< real64 > &	getNormalVector ()
	Get normal vectors. More...

arrayView2d< real64 const >	getNormalVector () const
	Get normal vectors. More...

arraySlice1d< real64 >	getNormalVector (localIndex k)
	Get normal vector of a specific embedded surface element. More...

arraySlice1d< real64 const >	getNormalVector (localIndex k) const
	Get normal vector of a specific embedded surface element. More...

array2d< real64 > &	getTangentVector1 ()
	Get an array of the first tangent vector of the embedded surface elements. More...

arrayView2d< real64 const >	getTangentVector1 () const
	Get an array of the first tangent vector of the embedded surface elements. More...

arraySlice1d< real64 >	getTangentVector1 (localIndex k)
	Get the first tangent vector of a specific embedded surface element. More...

arraySlice1d< real64 const >	getTangentVector1 (localIndex k) const
	Get the first tangent vector of a specific embedded surface element. More...

array2d< real64 > &	getTangentVector2 ()
	Get an array of the second tangent vector of the embedded surface elements. More...

arrayView2d< real64 const >	getTangentVector2 () const
	Get an array of the second tangent vector of the embedded surface elements. More...

arraySlice1d< real64 >	getTangentVector2 (localIndex k)
	Get the second tangent vector of a specific embedded surface element. More...

arraySlice1d< real64 const >	getTangentVector2 (localIndex k) const
	Get the second tangent vector of a specific embedded surface element. More...

array1d< real64 > &	getConnectivityIndex ()
	Get the connectivity index of the embedded surface element. More...

array1d< real64 > const &	getConnectivityIndex () const
	Get the connectivity index of the embedded surface element. More...

Public Member Functions inherited from geosx::SurfaceElementSubRegion
	SurfaceElementSubRegion (string const &name, dataRepository::Group *const parent)
	Constructor. More...

virtual	~SurfaceElementSubRegion () override
	Destructor.

NodeMapType const &	nodeList () const
	Get the face element to nodes map. More...

NodeMapType &	nodeList ()
	Get the face element to nodes map. More...

localIndex &	nodeList (localIndex const k, localIndex a)
	Get the local index of the a-th node of the k-th element. More...

localIndex const &	nodeList (localIndex const k, localIndex a) const
	Get the local index of the a-th node of the k-th element. More...

EdgeMapType const &	edgeList () const
	Get the surface element to edges map. More...

EdgeMapType &	edgeList ()
	Get the surface element to edges map. More...

FixedToManyElementRelation &	getToCellRelation ()
	Get the surface element to cells map. More...

FixedToManyElementRelation const &	getToCellRelation () const
	Get the surface element to cells map. More...

arrayView1d< real64 >	getElementAperture ()
	Get face element aperture. More...

arrayView1d< real64 const >	getElementAperture () const
	Get face element aperture. More...

arrayView1d< real64 >	getElementArea ()
	Get face element surface area. More...

arrayView1d< real64 const >	getElementArea () const
	Get face element surface area. More...

Public Member Functions inherited from geosx::ElementSubRegionBase
	ElementSubRegionBase (string const &name, dataRepository::Group *const parent)
	Constructor for this class. More...

	~ElementSubRegionBase ()
	Destructor.

virtual void	FixUpDownMaps (bool const clearIfUnmapped)
	Call ObjectManagerBase::FixUpDownMaps for the connectivity maps needed by the derived class (i.e., element-to-node map, element-to-face map, etc) More...

localIndex const &	numNodesPerElement () const
	Get the number of nodes per element. More...

virtual localIndex	numNodesPerElement (localIndex const k) const
	Get the number of nodes per element. More...

void	setNumNodesPerElement (localIndex numNodes)
	Set the number of nodes per element. More...

localIndex const &	numIndependentNodesPerElement () const
	Get the number of independent nodes per element. More...

void	setNumIndependentNodesPerElement (localIndex const numNodes)
	Set the number of independent nodes per element. More...

localIndex const &	numEdgesPerElement () const
	Get the number of edges per element. More...

void	setNumEdgesPerElement (localIndex const numEdges)
	Set the number of edges per element. More...

localIndex const &	numFacesPerElement () const
	Get the number of faces per element. More...

void	setNumFacesPerElement (localIndex const numFaces)
	Set the number of faces per element. More...

arrayView2d< real64 const >	getElementCenter () const
	Get the center of each element in this subregion. More...

arrayView2d< real64 >	getElementCenter ()
	Get the center of each element in this subregion. More...

arrayView1d< real64 const >	getElementVolume () const
	Get the volume of each element in this subregion. More...

dataRepository::Group const *	GetConstitutiveModels () const
	Get the group in which the constitutive models of this subregion are registered. More...

dataRepository::Group *	GetConstitutiveModels ()
	Get the group in which the constitutive models of this subregion are registered. More...

template<typename T = constitutive::ConstitutiveBase>
T const *	getConstitutiveModel (string const &name) const
	Get a pointer to the constitutive model. More...

template<typename T = constitutive::ConstitutiveBase>
T *	getConstitutiveModel (string const &name)
	Get a pointer to the constitutive model. More...

virtual void	SetElementType (string const &elementType)
	Set the type of element in this subregion. More...

std::vector< int >	getVTKNodeOrdering () const
	Get the VTK ordering for this subregion. More...

Public Member Functions inherited from geosx::ObjectManagerBase
	ObjectManagerBase (std::string const &name, dataRepository::Group *const parent)
	Constructor. More...

	~ObjectManagerBase () override
	Destructor.

virtual localIndex	PackSize (string_array const &wrapperNames, arrayView1d< localIndex const > const &packList, integer const recursive, bool on_device=false) const override
	Get the size required to pack a list of indices within a list of wrappers. More...

virtual localIndex	Pack (buffer_unit_type *&buffer, string_array const &wrapperNames, arrayView1d< localIndex const > const &packList, integer const recursive, bool on_device=false) const override
	Pack a list of indices within a list of wrappers. More...

virtual localIndex	Unpack (buffer_unit_type const *&buffer, arrayView1d< localIndex > &packList, integer const recursive, bool on_device=false) override
	Unpack a buffer. More...

template<bool DOPACK>
localIndex	PackSets (buffer_unit_type *&buffer, arrayView1d< localIndex const > const &packList) const
	Packs the elements of each set that actually are in `packList`. More...

localIndex	UnpackSets (buffer_unit_type const *&buffer)
	Unpack the content of `buffer` into the sets of the instance. More...

virtual void	ViewPackingExclusionList (SortedArray< localIndex > &exclusionList) const
	Inserts in `exclusionList` the data that shall not be packed. More...

virtual localIndex	PackGlobalMapsSize (arrayView1d< localIndex const > const &packList, integer const recursive) const
	Computes the pack size of the global maps elements in the @ packList. More...

virtual localIndex	PackGlobalMaps (buffer_unit_type *&buffer, arrayView1d< localIndex const > const &packList, integer const recursive) const
	Packs the global maps elements in the @ packList. More...

void	SetReceiveLists ()
	Clear and redefines the ghosts to receive.

virtual localIndex	PackUpDownMapsSize (arrayView1d< localIndex const > const &packList) const
	Computes the pack size of the specific elements in the @ packList. More...

virtual localIndex	PackUpDownMaps (buffer_unit_type *&buffer, arrayView1d< localIndex const > const &packList) const
	Packs the specific elements in the @ packList. More...

virtual localIndex	UnpackUpDownMaps (buffer_unit_type const *&buffer, array1d< localIndex > &packList, bool const overwriteUpMaps, bool const overwriteDownMaps)
	Unpacks the specific elements in the @ packList. More...

virtual localIndex	UnpackGlobalMaps (buffer_unit_type const *&buffer, localIndex_array &packList, integer const recursive)
	Unpacks the global maps from `buffer`. More...

localIndex	PackParentChildMapsSize (arrayView1d< localIndex const > const &packList) const
	Computes the pack size of the parent/child relations in `packList`. More...

localIndex	PackParentChildMaps (buffer_unit_type *&buffer, arrayView1d< localIndex const > const &packList) const
	Packs the parent/child relations in `packList`. More...

localIndex	UnpackParentChildMaps (buffer_unit_type const *&buffer, localIndex_array &packList)
	Unacks the parent/child relations in `packList`. More...

void	moveSets (LvArray::MemorySpace const targetSpace)
	Manually move all sets to a memory space. More...

localIndex	resize (localIndex const newSize, const bool)
	Resize the group and all contained wrappers that resize with parent. More...

void	CreateSet (const std::string &newSetName)
	Creates a new set. More...

void	ConstructSetFromSetAndMap (SortedArrayView< localIndex const > const &inputSet, const array2d< localIndex > &map, const std::string &setName)
	Builds a new set on this instance given another objects set and the map between them. More...

void	ConstructSetFromSetAndMap (SortedArrayView< localIndex const > const &inputSet, const array1d< localIndex_array > &map, const std::string &setName)
	Builds a new set on this instance given another objects set and the map between them. More...

void	ConstructSetFromSetAndMap (SortedArrayView< localIndex const > const &inputSet, ArrayOfArraysView< localIndex const > const &map, const std::string &setName)
	Builds a new set on this instance given another objects set and the map between them. More...

void	ConstructGlobalToLocalMap ()
	Constructs the global to local map.

void	ConstructLocalListOfBoundaryObjects (localIndex_array &objectList) const
	Computes the (local) index list that are domain boundaries. More...

void	ConstructGlobalListOfBoundaryObjects (globalIndex_array &objectList) const
	Computes the (global) index list that are domain boundaries. More...

virtual void	ExtractMapFromObjectForAssignGlobalIndexNumbers (ObjectManagerBase const *const obj, std::vector< std::vector< globalIndex > > &map)
	Extract map from object and assign global indices. More...

void	SetGhostRankForSenders (int const neighborRank)
	Defines `neighborRank` ownership for ghost objects. More...

localIndex	GetNumberOfGhosts () const
	Get the number of ghost objects. More...

localIndex	GetNumberOfLocalIndices () const
	Get the number of locally owned objects. More...

integer	SplitObject (localIndex const indexToSplit, int const rank, localIndex &newIndex)
	Split object to deal with topology changes. More...

void	inheritGhostRankFromParent (std::set< localIndex > const &indices)
	sets the value of m_ghostRank to the value of the objects parent. More...

void	CopyObject (localIndex const source, localIndex const destination)
	Copy object from `source` to @ destination. More...

void	SetMaxGlobalIndex ()
	Computes the maximum global index allong all the MPI ranks.

virtual void	enforceStateFieldConsistencyPostTopologyChange (std::set< localIndex > const &targetIndices)
	Updates the child and target indices after a topology change. More...

template<typename MESH_DATA_TRAIT >
dataRepository::Wrapper< typename MESH_DATA_TRAIT::type > &	registerExtrinsicData (string const &nameOfRegisteringObject)
	Register data with this ObjectManagerBase using a dataRepository::Wrapper. More...

template<typename MESH_DATA_TRAIT0 , typename MESH_DATA_TRAIT1 , typename ... MESH_DATA_TRAITS>
void	registerExtrinsicData (string const &nameOfRegisteringObject)
	Register a collection of data with this ObjectManagerBase using a dataRepository::Wrapper. More...

template<typename MESH_DATA_TRAIT >
GEOSX_DECLTYPE_AUTO_RETURN	getExtrinsicData () const
	Get a view to the data associated with a trait from this ObjectManagerBase. More...

template<typename MESH_DATA_TRAIT >
GEOSX_DECLTYPE_AUTO_RETURN	getExtrinsicData ()
	Get the data associated with a trait from this ObjectManagerBase. More...

template<typename MESH_DATA_TRAIT >
bool	hasExtrinsicData () const
	Checks if an extrinsic data has been registered. More...

virtual viewKeyStruct &	viewKeys ()
	Get the view keys for Group access. More...

virtual viewKeyStruct const &	viewKeys () const
	Get the view keys for Group access, const version. More...

virtual groupKeyStruct &	groupKeys ()
	Get the group keys for Group access. More...

virtual groupKeyStruct const &	groupKeys () const
	Get the group keys for Group access, const version. More...

Group &	sets ()
	Get the group holding the object sets. More...

Group const &	sets () const
	Get the group holding the object sets, const version. More...

SortedArray< localIndex > &	externalSet ()
	Get the external set. More...

SortedArrayView< localIndex const >	externalSet () const
	Get the external set, const version. More...

void	updateGlobalToLocalMap (localIndex const lid)
	Updates (if needed) the global index for local index `lid`. More...

arrayView1d< globalIndex >	localToGlobalMap ()
	Get local to global map. More...

arrayView1d< globalIndex const >	localToGlobalMap () const
	Get local to global map, const version. More...

unordered_map< globalIndex, localIndex > const &	globalToLocalMap () const
	Get global to local map. More...

localIndex	globalToLocalMap (globalIndex const gid) const
	Retrieves the local index for given global index. More...

array1d< integer > const &	isExternal ()
	Get the locality information of the objects. More...

arrayView1d< integer const >	isExternal () const
	Get the locality information of the objects. More...

array1d< integer > const &	ghostRank ()
	Get the ghost information of each object. More...

arrayView1d< integer const >	ghostRank () const
	Get the ghost information of each object, const version. More...

NeighborData &	getNeighborData (int const rank)
	Get neighbor data for given `rank`. More...

NeighborData const &	getNeighborData (int const rank) const
	Get neighbor data for given `rank`, const version. More...

void	addNeighbor (int const rank)
	Add a neighbor for `rank`. More...

void	removeNeighbor (int const rank)
	Remove neighbor for `rank`. More...

globalIndex	maxGlobalIndex () const
	Get the maximum global index of all objects across all rank. See. More...

arrayView1d< integer >	getDomainBoundaryIndicator ()
	Get the domain boundary indicator. More...

arrayView1d< integer const >	getDomainBoundaryIndicator () const
	Get the domain boundary indicator. More...

Public Member Functions inherited from geosx::dataRepository::Group
	Group (std::string const &name, Group *const parent)
	Constructor. More...

	Group (Group &&source)
	Move constructor. More...

virtual	~Group ()
	Destructor, deletes all Groups and Wrappers owned by this Group.

	Group ()=delete
	Deleted default constructor.

	Group (Group const &)=delete
	Deleted copy constructor.

	Group (Group const &&)=delete
	Deleted move constructor.

Group &	operator= (Group const &)=delete
	Deleted copy assignment operator. More...

Group &	operator= (Group &&)=delete
	Deleted move assignment operator. More...

virtual const std::type_info &	get_typeid () const
	Get typeid for current group. More...

bool	CheckTypeID (std::type_info const &typeToCheck) const
	Check a type_info against the type_info of this Group. More...

void	PrintDataHierarchy (integer indent=0)
	Prints the data hierarchy recursively. More...

string	dumpInputOptions () const

template<typename T = Group>
T *	RegisterGroup (std::string const &name, std::unique_ptr< T > newObject)
	Register a new Group as a sub-group of current Group. More...

template<typename T = Group>
T *	RegisterGroup (std::string const &name, T *newObject)
	Register a new Group as a sub-group of current Group. More...

template<typename T = Group>
T *	RegisterGroup (std::string const &name)
	Register a new Group as a sub-group of current Group. More...

template<typename T = Group>
T *	RegisterGroup (subGroupMap::KeyIndex const &keyIndex)
	Register a new Group as a sub-group of current Group. More...

template<typename T = Group, typename TBASE = Group>
T *	RegisterGroup (std::string const &name, std::string const &catalogName)
	Register a new Group as a sub-group of current Group. More...

void	deregisterGroup (std::string const &name)
	Removes a child group from this group. More...

virtual Group *	CreateChild (string const &childKey, string const &childName)
	Creates a new sub-Group using the ObjectCatalog functionality. More...

template<typename T = Group>
T *	GetGroup (localIndex index)
	Retrieve a sub-group from the current Group using an index. More...

template<typename T = Group>
T const *	GetGroup (localIndex index) const
	Retrieve a sub-group from the current Group using an index. More...

template<typename T = Group>
T *	GetGroup (string const &name)
	Retrieve a sub-group from the current Group using a string. More...

template<typename T = Group>
T const *	GetGroup (string const &name) const
	Retrieve a sub-group from the current Group using a string. More...

template<typename T = Group>
T &	getGroupReference (string const &key)

template<typename T = Group>
T const &	getGroupReference (string const &key) const

template<typename T = Group>
T &	GetGroupReference (subGroupMap::KeyIndex const &key)

template<typename T = Group>
T const &	GetGroupReference (subGroupMap::KeyIndex const &key) const

template<typename T = Group>
T *	GetGroup (subGroupMap::KeyIndex const &key)
	Retrieve a sub-group from the current Group using a KeyIndexT. More...

template<typename T = Group>
T const *	GetGroup (subGroupMap::KeyIndex const &key) const
	Retrieve a sub-group from the current Group using a KeyIndexT. More...

template<typename T = Group>
T *	GetGroupByPath (string const &path)
	Retrieve a group from the hierarchy using a path. More...

template<typename T = Group>
T const *	GetGroupByPath (string const &path) const
	Retrieve a group from the hierarchy using a path. More...

subGroupMap &	GetSubGroups ()
	Get the subgroups object. More...

subGroupMap const &	GetSubGroups () const
	Get the subgroups object. More...

localIndex	numSubGroups () const
	return the number of sub groups in this Group More...

bool	hasGroup (std::string const &name) const
	Check whether a sub-group exists. More...

template<typename GROUPTYPE = Group, typename ... GROUPTYPES, typename LAMBDA >
void	forSubGroups (LAMBDA lambda)
	Apply the given functor to subgroups that can be casted to one of specified types. More...

template<typename GROUPTYPE = Group, typename ... GROUPTYPES, typename LAMBDA >
void	forSubGroups (LAMBDA lambda) const
	Apply the given functor to subgroups that can be casted to one of specified types. More...

template<typename GROUPTYPE = Group, typename ... GROUPTYPES, typename LOOKUP_CONTAINER , typename LAMBDA >
void	forSubGroups (LOOKUP_CONTAINER const &subGroupKeys, LAMBDA lambda)

template<typename GROUPTYPE = Group, typename ... GROUPTYPES, typename LOOKUP_CONTAINER , typename LAMBDA >
void	forSubGroups (LOOKUP_CONTAINER const &subGroupKeys, LAMBDA lambda) const

template<typename LAMBDA >
void	forWrappers (LAMBDA lambda)
	Apply the given functor to wrappers. More...

template<typename LAMBDA >
void	forWrappers (LAMBDA lambda) const
	Apply the given functor to wrappers. More...

template<typename TYPE , typename ... TYPES, typename LAMBDA >
void	forWrappers (LAMBDA lambda)
	Apply the given functor to wrappers that can be cast to one of specified types. More...

template<typename TYPE , typename ... TYPES, typename LAMBDA >
void	forWrappers (LAMBDA lambda) const
	Apply the given functor to wrappers that can be cast to one of specified types. More...

void	Initialize (Group *const group)
	Run initialization functions on this and all subgroups. More...

virtual void	InitializationOrder (string_array &order)
	Sets the initialization order for sub-Groups. More...

void	InitializePostInitialConditions (Group *const group)
	Initialization routine to be called after calling ApplyInitialConditions(). More...

void	postRestartInitializationRecursive (Group *const domain)
	Initialization routine to be called after calling reading a restart file. More...

void	ProcessInputFileRecursive (xmlWrapper::xmlNode &targetNode)
	Recursively read values using ProcessInputFile() from the input file and put them into the wrapped values for this group. More...

void	PostProcessInputRecursive ()
	Recursively call PostProcessInput() to apply post processing after reading input values.

template<typename T , typename TBASE = T>
Wrapper< TBASE > *	registerWrapper (std::string const &name, wrapperMap::KeyIndex::index_type *const rkey=nullptr)
	Create and register a Wrapper around a new object. More...

template<typename T , typename TBASE = T>
Wrapper< TBASE > *	registerWrapper (Group::wrapperMap::KeyIndex const &viewKey)

template<typename T >
Wrapper< T > *	registerWrapper (std::string const &name, std::unique_ptr< T > newObject)
	Register a Wrapper around a given object and take ownership. More...

template<typename T >
Wrapper< T > *	registerWrapper (std::string const &name, T *newObject)
	Register a Wrapper around an existing object, does not take ownership of the object. More...

WrapperBase *	registerWrapper (string const &name, std::unique_ptr< WrapperBase > wrapper)
	Register and take ownership of an existing Wrapper. More...

void	deregisterWrapper (string const &name)
	Removes a Wrapper from this group. More...

void	GenerateDataStructureSkeleton (integer const level)
	Build a complete datastructure for schema generation. More...

virtual void	ExpandObjectCatalogs ()
	Expand any catalogs in the data structure.

virtual void	SetSchemaDeviations (xmlWrapper::xmlNode schemaRoot, xmlWrapper::xmlNode schemaParent, integer documentationType)
	Inform the schema generator of any deviations between the xml and GEOS data structures. More...

virtual void	RegisterDataOnMeshRecursive (Group *const meshBodies)
	Calls RegisterDataOnMesh() recursively. More...

virtual void	RegisterDataOnMesh (Group *const meshBodies)
	Register data on mesh entities. More...

virtual localIndex	PackSize (string_array const &wrapperNames, integer const recursive, bool on_device=false) const
	Get the size required to pack a list of wrappers. More...

virtual localIndex	Pack (buffer_unit_type *&buffer, string_array const &wrapperNames, integer const recursive, bool on_device=false) const
	Pack a list of wrappers to a buffer. More...

WrapperBase const *	getWrapperBase (indexType const index) const
	Retrieve a WrapperBase stored in this group. More...

WrapperBase *	getWrapperBase (indexType const index)
	Retrieve a WrapperBase stored in this group. More...

WrapperBase const *	getWrapperBase (std::string const &name) const
	Retrieve a WrapperBase stored in this group. More...

WrapperBase *	getWrapperBase (std::string const &name)
	Retrieve a WrapperBase stored in this group. More...

WrapperBase const *	getWrapperBase (wrapperMap::KeyIndex const &keyIndex) const
	Retrieve a WrapperBase stored in this group. More...

WrapperBase *	getWrapperBase (wrapperMap::KeyIndex const &keyIndex)
	Retrieve a WrapperBase stored in this group. More...

indexType	getWrapperIndex (std::string const &name) const

wrapperMap const &	wrappers () const
	Get access to the internal wrapper storage. More...

wrapperMap &	wrappers ()
	Get access to the internal wrapper storage. More...

template<typename LOOKUP_TYPE >
bool	hasWrapper (LOOKUP_TYPE const &lookup) const
	Check if a wrapper exists. More...

template<typename T , typename LOOKUP_TYPE >
Wrapper< T > const *	getWrapper (LOOKUP_TYPE const &index) const
	Retrieve a Wrapper stored in this group. More...

template<typename T , typename LOOKUP_TYPE >
Wrapper< T > *	getWrapper (LOOKUP_TYPE const &index)
	Retrieve a Wrapper stored in this group. More...

template<typename T >
Wrapper< T > const *	getWrapper (char const *const key) const
	Retrieve a Wrapper stored in this group. More...

template<typename T >
Wrapper< T > *	getWrapper (char const *const key)
	Retrieve a Wrapper stored in this group. More...

template<typename T , typename LOOKUP_TYPE >
GEOSX_DECLTYPE_AUTO_RETURN	getReference (LOOKUP_TYPE const &lookup) const
	Look up a wrapper and get reference to wrapped object. More...

template<typename T , typename LOOKUP_TYPE >
T &	getReference (LOOKUP_TYPE const &lookup)
	Look up a wrapper and get reference to wrapped object. More...

template<typename T >
GEOSX_DECLTYPE_AUTO_RETURN	getReference (char const *const name) const

template<typename T >
T &	getReference (char const *const name)

virtual void	resize (localIndex const newSize)
	Resize the group and all contained wrappers that resize with parent. More...

virtual void	reserve (indexType const newsize)
	Set the new capacity and reserve it in all wrappers that resize with parent. More...

localIndex	capacity () const
	Get the "capacity" of the group, which determines the capacity of resizable wrappers. More...

localIndex	size () const
	Get the "size" of the group, which determines the number of elements in resizable wrappers. More...

const string	getName () const
	Get group name. More...

Group *	getParent ()
	Access the group's parent. More...

Group const *	getParent () const
	Access the group's parent. More...

localIndex	getIndexInParent () const
	Get the group's index withing its parent group. More...

integer	sizedFromParent () const
	Check whether this Group is resized when its parent is resized. More...

Group *	setSizedFromParent (int val)
	Set whether this wrapper is resized when its parent is resized. More...

RestartFlags	getRestartFlags () const
	Get flags that control restart output of this group. More...

void	setRestartFlags (RestartFlags flags)
	Set flags that control restart output of this group. More...

InputFlags	getInputFlags () const
	Get input flags for schema generation. More...

void	setInputFlags (InputFlags flags)
	Set input flags for schema generation. More...

conduit::Node &	getConduitNode ()
	Get the Conduit node object associated with this group. More...

void	prepareToWrite ()
	Register the group and its wrappers with Conduit.

void	finishWriting ()
	Write the group and its wrappers into Conduit.

void	loadFromConduit ()
	Read the group and its wrappers from Conduit.

void	enableLogLevelInput ()
	Enable verbosity input for object.

integer	getLogLevel () const

template<typename T >
T	group_cast ()
	Downcast this Group. More...

template<typename T >
T	group_cast () const
	Downcast this Group. More...

Static factory catalog functions
static const string	CatalogName ()
	Get catalog name. More...

virtual const string	getCatalogName () const override
	Get catalog name. More...

Additional Inherited Members
Static Public Member Functions inherited from geosx::SurfaceElementSubRegion
static const string	CatalogName ()
	Get catalog name. More...

Static Public Member Functions inherited from geosx::ObjectManagerBase
template<typename TYPE_RELATION >
static void	FixUpDownMaps (TYPE_RELATION &relation, map< localIndex, array1d< globalIndex > > &unmappedIndices, bool const clearIfUnmapped)
	Fixing the up/down maps by mapping the unmapped indices. More...

template<typename TYPE_RELATION >
static void	FixUpDownMaps (TYPE_RELATION &relation, map< localIndex, SortedArray< globalIndex > > &unmappedIndices, bool const clearIfUnmapped)
	Fixing the up/down maps by mapping the unmapped indices. More...

static void	FixUpDownMaps (ArrayOfSets< localIndex > &relation, unordered_map< globalIndex, localIndex > const &globalToLocal, map< localIndex, SortedArray< globalIndex > > &unmappedIndices, bool const clearIfUnmapped)
	Fixing the up/down maps by mapping the unmapped indices. More...

static void	CleanUpMap (std::set< localIndex > const &targetIndices, array1d< SortedArray< localIndex > > &upmap, arrayView2d< localIndex const > const &downmap)
	Removes from the list of arrays of `upmap` all the elements for which the "mirror target array" of `downmap` does not contain the proper target index. More...

static void	CleanUpMap (std::set< localIndex > const &targetIndices, ArrayOfSetsView< localIndex > const &upmap, arrayView2d< localIndex const > const &downmap)
	Removes from the list of sets of `upmap` all the elements for which the "mirror target array" of `downmap` does not contain the proper target index. More...

static void	CleanUpMap (std::set< localIndex > const &targetIndices, array1d< SortedArray< localIndex > > &upmap, arrayView1d< arrayView1d< localIndex const > const > const &downmap)
	Removes from the list of arrays of `upmap` all the elements for which the "mirror target array" of `downmap` does not contain the proper target index. More...

static void	CleanUpMap (std::set< localIndex > const &targetIndices, ArrayOfSetsView< localIndex > const &upmap, arrayView1d< arrayView1d< localIndex const > const > const &downmap)
	Removes from the list of sets of `upmap` all the elements for which the "mirror target array" of `downmap` does not contain the proper target index. More...

static void	CleanUpMap (std::set< localIndex > const &targetIndices, ArrayOfSetsView< localIndex > const &upmap, ArrayOfArraysView< localIndex const > const &downmap)
	Removes from the list of sets of `upmap` all the elements for which the "mirror target array" of `downmap` does not contain the proper target index. More...

static localIndex	GetParentRecusive (arraySlice1d< localIndex const > const &parentIndices, localIndex const lookup)
	Get the upmost parent. More...

static CatalogInterface::CatalogType &	GetCatalog ()
	Acessing the unique instance of this catalog. More...

Static Public Member Functions inherited from geosx::dataRepository::Group
template<typename T0 , typename T1 , typename ... CASTTYPES, typename CONTAINERTYPE , typename LAMBDA >
static bool	applyLambdaToContainer (CONTAINERTYPE &container, LAMBDA &&lambda)
	Apply a given functor to a container if the container can be cast to one of the specified types. More...

static CatalogInterface::CatalogType &	GetCatalog ()
	Get the singleton catalog for this class. More...

template<typename T >
static T	group_cast (Group *group)
	Downcast a Group *. More...

template<typename T >
static T	group_cast (Group const *group)
	Downcast a Group const *. More...

Public Attributes inherited from geosx::SurfaceElementSubRegion
FixedToManyElementRelation	m_surfaceElementsToCells
	Map between the face elements and the cells.

Public Attributes inherited from geosx::ObjectManagerBase
struct geosx::ObjectManagerBase::viewKeyStruct	m_ObjectManagerBaseViewKeys
	viewKey struct for the ObjectManagerBase class

struct geosx::ObjectManagerBase::groupKeyStruct	m_ObjectManagerBaseGroupKeys
	groupKey struct for the ObjectManagerBase class

Protected Member Functions inherited from geosx::dataRepository::Group
virtual void	PostProcessInput ()

virtual void	InitializePreSubGroups (Group *const group)
	Called by Initialize() prior to initializing sub-Groups. More...

virtual void	InitializePostSubGroups (Group *const group)
	Called by Initialize() after to initializing sub-Groups. More...

virtual void	InitializePostInitialConditions_PreSubGroups (Group *const group)
	Called by InitializePostInitialConditions() prior to initializing sub-Groups. More...

virtual void	InitializePostInitialConditions_PostSubGroups (Group *const group)
	Called by InitializePostInitialConditions() after to initializing sub-Groups. More...

virtual void	postRestartInitialization (Group *const domain)
	Performs initialization required after reading from a restart file. More...

Protected Attributes inherited from geosx::SurfaceElementSubRegion
NodeMapType	m_toNodesRelation
	list of nodes

EdgeMapType	m_toEdgesRelation
	list of edges

array1d< real64 >	m_elementAperture
	Member level field for the element center.

array1d< real64 >	m_elementArea
	Member level field for the element center.

Protected Attributes inherited from geosx::ElementSubRegionBase
localIndex	m_numNodesPerElement
	Number of nodes per element in this subregion.

localIndex	m_numIndependentNodesPerElement
	Number of independent nodes per element in this subregion.

localIndex	m_numEdgesPerElement
	Number of edges per element in this subregion.

localIndex	m_numFacesPerElement
	Number of faces per element in this subregion.

array2d< real64 >	m_elementCenter
	Member level field for the element center.

array1d< real64 >	m_elementVolume
	Member level field for the element volume.

string	m_elementTypeString
	Type of element in this subregion.

Protected Attributes inherited from geosx::ObjectManagerBase
Group	m_sets
	Group that holds object sets.

Group	m_neighborGroup
	Group that holds all the NeighborData objects.

array1d< globalIndex >	m_localToGlobalMap
	Contains the global index of each object.

unordered_map< globalIndex, localIndex >	m_globalToLocalMap
	Map from object global index to the local index.

array1d< integer >	m_isExternal
	Array that holds if an object is external.

array1d< integer >	m_domainBoundaryIndicator
	Domain boundary indicator: 1 means the "index" is on the boundary.

array1d< integer >	m_ghostRank
	Array that holds the ghost information about each object. More...

unordered_map< int, NeighborData >	m_neighborData
	A map from rank to the associated NeighborData object.

real64	m_overAllocationFactor = 1.1
	Factor by which to overallocate when adding objects.

globalIndex	m_maxGlobalIndex = -1
	The maximum global index of all objects across all rank.

globalIndex	m_localMaxGlobalIndex = -1
	The maximum global index of any object of all objects on this rank.

Detailed Description

The EmbeddedSurfaceSubRegion class contains the functionality to support the concept of an embedded surface element. It consists of a 2D surface that cuts a 3D matrix cell.

Definition at line 38 of file EmbeddedSurfaceSubRegion.hpp.

Constructor & Destructor Documentation

◆ EmbeddedSurfaceSubRegion()

geosx::EmbeddedSurfaceSubRegion::EmbeddedSurfaceSubRegion	(	string const &	name,
		dataRepository::Group *const	parent
	)

Constructor.

Parameters

name	the group name
parent	the parent group

Member Function Documentation

◆ AddNewEmbeddedSurface()

bool geosx::EmbeddedSurfaceSubRegion::AddNewEmbeddedSurface	(	localIndex const	cellIndex,
		localIndex const	regionIndex,
		localIndex const	subRegionIndex,
		NodeManager &	nodeManager,
		EdgeManager const &	edgeManager,
		FixedOneToManyRelation const &	cellToEdges,
		BoundedPlane const *	fracture
	)

Function to add a new embedded surface element.

Parameters

cellIndex	cell element index
regionIndex	cell element region index
subRegionIndex	cell element subregion index
nodeManager	the nodemanager group
edgeManager	the edgemanager group
cellToEdges	cellElement to edges map
fracture	pointer to the bounded plane which is defining the embedded surface element

Returns: boolean defining whether the embedded element was added or not

◆ CalculateElementGeometricQuantities() [1/2]

virtual void geosx::EmbeddedSurfaceSubRegion::CalculateElementGeometricQuantities	(	NodeManager const &	nodeManager,
		FaceManager const &	faceManager
	)

overridevirtual

Calculate the geometric quantities for each element in the subregion.

Parameters

[in]	nodeManager	the nodeManager (for geometrical info and connectivity involving nodes)
[in]	faceManager	the faceManager (for geometrical info and connectivity involving faces)

Implements geosx::ElementSubRegionBase.

◆ CalculateElementGeometricQuantities() [2/2]

void geosx::EmbeddedSurfaceSubRegion::CalculateElementGeometricQuantities	(	arrayView2d< real64 const > const	intersectionPoints,
		localIndex	k
	)

Function to compute the geometric quantities of a specific embedded surface element.

Parameters

intersectionPoints	array containing the nodes defining the embedded surface elements
k	index of the face element

◆ CatalogName()

static const string geosx::EmbeddedSurfaceSubRegion::CatalogName ( )

inlinestatic

Get catalog name.

Returns: the catalog name

Definition at line 54 of file EmbeddedSurfaceSubRegion.hpp.

◆ ComputeHeavisideFunction()

real64 geosx::EmbeddedSurfaceSubRegion::ComputeHeavisideFunction	(	ArraySlice< real64 const, 1, nodes::REFERENCE_POSITION_USD - 1 > const	nodeCoord,
		localIndex const	k
	)		const

Given the coordinates of a node, it computes the Heaviside function iside a cut element with respect to the fracture element.

Parameters

nodeCoord	coordinate of the node
k	embedded surface cell index

Returns: value of the Heaviside

◆ getCatalogName()

virtual const string geosx::EmbeddedSurfaceSubRegion::getCatalogName ( ) const

inlineoverridevirtual

Get catalog name.

Returns: the catalog name

Reimplemented from geosx::SurfaceElementSubRegion.

Definition at line 61 of file EmbeddedSurfaceSubRegion.hpp.

◆ getConnectivityIndex() [1/2]

array1d< real64 >& geosx::EmbeddedSurfaceSubRegion::getConnectivityIndex ( )

inline

Get the connectivity index of the embedded surface element.

Returns: the connectivity index

Definition at line 255 of file EmbeddedSurfaceSubRegion.hpp.

◆ getConnectivityIndex() [2/2]

array1d< real64 > const& geosx::EmbeddedSurfaceSubRegion::getConnectivityIndex ( ) const

inline

Get the connectivity index of the embedded surface element.

Returns: the connectivity index

Definition at line 260 of file EmbeddedSurfaceSubRegion.hpp.

◆ GetElementTypeString()

virtual string geosx::EmbeddedSurfaceSubRegion::GetElementTypeString ( ) const

inlinefinaloverridevirtual

Get the type of element in this subregion.

Returns: a string specifying the type of element in this subregion

See class FiniteElementBase for possible element type.

Reimplemented from geosx::ElementSubRegionBase.

Definition at line 161 of file EmbeddedSurfaceSubRegion.hpp.

◆ getNormalVector() [1/4]

array2d< real64 >& geosx::EmbeddedSurfaceSubRegion::getNormalVector ( )

inline

Get normal vectors.

Returns: an array of normal vectors.

Definition at line 185 of file EmbeddedSurfaceSubRegion.hpp.

◆ getNormalVector() [2/4]

arrayView2d< real64 const > geosx::EmbeddedSurfaceSubRegion::getNormalVector ( ) const

inline

Get normal vectors.

Returns: an array of normal vectors.

Definition at line 190 of file EmbeddedSurfaceSubRegion.hpp.

◆ getNormalVector() [3/4]

arraySlice1d< real64 > geosx::EmbeddedSurfaceSubRegion::getNormalVector ( localIndex k )

inline

Get normal vector of a specific embedded surface element.

Parameters

k	index of the embedded surface element

Returns: the normal vector of a specific embedded surface element

Definition at line 197 of file EmbeddedSurfaceSubRegion.hpp.

◆ getNormalVector() [4/4]

arraySlice1d< real64 const > geosx::EmbeddedSurfaceSubRegion::getNormalVector ( localIndex k ) const

inline

Get normal vector of a specific embedded surface element.

Parameters

k	index of the embedded surface element

Returns: the normal vector of a specific embedded surface element

Definition at line 202 of file EmbeddedSurfaceSubRegion.hpp.

◆ getTangentVector1() [1/4]

array2d< real64 >& geosx::EmbeddedSurfaceSubRegion::getTangentVector1 ( )

inline

Get an array of the first tangent vector of the embedded surface elements.

Returns: an array of the first tangent vector of the embedded surface elements

Definition at line 208 of file EmbeddedSurfaceSubRegion.hpp.

◆ getTangentVector1() [2/4]

arrayView2d< real64 const > geosx::EmbeddedSurfaceSubRegion::getTangentVector1 ( ) const

inline

Get an array of the first tangent vector of the embedded surface elements.

Returns: an array of the first tangent vector of the embedded surface elements

Definition at line 213 of file EmbeddedSurfaceSubRegion.hpp.

◆ getTangentVector1() [3/4]

arraySlice1d< real64 > geosx::EmbeddedSurfaceSubRegion::getTangentVector1 ( localIndex k )

inline

Get the first tangent vector of a specific embedded surface element.

Parameters

k	index of the embedded surface element

Returns: the first tangent vector of a specific embedded surface element

Definition at line 220 of file EmbeddedSurfaceSubRegion.hpp.

◆ getTangentVector1() [4/4]

arraySlice1d< real64 const > geosx::EmbeddedSurfaceSubRegion::getTangentVector1 ( localIndex k ) const

inline

Get the first tangent vector of a specific embedded surface element.

Parameters

k	index of the embedded surface element

Returns: the first tangent vector of a specific embedded surface element

Definition at line 225 of file EmbeddedSurfaceSubRegion.hpp.

◆ getTangentVector2() [1/4]

array2d< real64 >& geosx::EmbeddedSurfaceSubRegion::getTangentVector2 ( )

inline

Get an array of the second tangent vector of the embedded surface elements.

Returns: an array of the second tangent vector of the embedded surface elements

Definition at line 231 of file EmbeddedSurfaceSubRegion.hpp.

◆ getTangentVector2() [2/4]

arrayView2d< real64 const > geosx::EmbeddedSurfaceSubRegion::getTangentVector2 ( ) const

inline

Get an array of the second tangent vector of the embedded surface elements.

Returns: an array of the second tangent vector of the embedded surface elements

Definition at line 236 of file EmbeddedSurfaceSubRegion.hpp.

◆ getTangentVector2() [3/4]

arraySlice1d< real64 > geosx::EmbeddedSurfaceSubRegion::getTangentVector2 ( localIndex k )

inline

Get the second tangent vector of a specific embedded surface element.

Parameters

k	index of the embedded surface element

Returns: the second tangent vector of a specific embedded surface element

Definition at line 243 of file EmbeddedSurfaceSubRegion.hpp.

◆ getTangentVector2() [4/4]

arraySlice1d< real64 const > geosx::EmbeddedSurfaceSubRegion::getTangentVector2 ( localIndex k ) const

inline

Get the second tangent vector of a specific embedded surface element.

Parameters

k	index of the embedded surface element

Returns: the second tangent vector of a specific embedded surface element

Definition at line 248 of file EmbeddedSurfaceSubRegion.hpp.

◆ inheritGhostRank()

void geosx::EmbeddedSurfaceSubRegion::inheritGhostRank ( array1d< array1d< arrayView1d< integer const > > > const & cellGhostRank )

inherit ghost rank from cell elements.

Parameters

cellGhostRank cell element ghost ranks

◆ numOfJumpEnrichments() [1/2]

localIndex& geosx::EmbeddedSurfaceSubRegion::numOfJumpEnrichments ( )

inline

Get number of jump enrichments.

Returns: a reference to the number of jump enrichments

Definition at line 173 of file EmbeddedSurfaceSubRegion.hpp.

◆ numOfJumpEnrichments() [2/2]

localIndex const& geosx::EmbeddedSurfaceSubRegion::numOfJumpEnrichments ( ) const

inline

Get number of jump enrichments.

Returns: a constant reference to the number of jump enrichments

Definition at line 179 of file EmbeddedSurfaceSubRegion.hpp.

◆ setupRelatedObjectsInRelations()

virtual void geosx::EmbeddedSurfaceSubRegion::setupRelatedObjectsInRelations ( MeshLevel const *const mesh )

overridevirtual

Link the connectivity maps of the subregion to the managers storing the mesh information.

Parameters

[in] mesh the meshLevel object (single level only)

In the derived classes, this function is used to passe a pointer to the nodeManager, faceManager, and (if needed) edgeManager to, respectively, the node list, face list, and edge list of the subregion.

Implements geosx::ElementSubRegionBase.

The documentation for this class was generated from the following file:

coreComponents/mesh/EmbeddedSurfaceSubRegion.hpp

Classes

Public Types

Public Member Functions

Static factory catalog functions

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

◆ EmbeddedSurfaceSubRegion()

Member Function Documentation

◆ AddNewEmbeddedSurface()

◆ CalculateElementGeometricQuantities() [1/2]

◆ CalculateElementGeometricQuantities() [2/2]

◆ CatalogName()

◆ ComputeHeavisideFunction()

◆ getCatalogName()

◆ getConnectivityIndex() [1/2]

◆ getConnectivityIndex() [2/2]

◆ GetElementTypeString()

◆ getNormalVector() [1/4]

◆ getNormalVector() [2/4]

◆ getNormalVector() [3/4]

◆ getNormalVector() [4/4]

◆ getTangentVector1() [1/4]

◆ getTangentVector1() [2/4]

◆ getTangentVector1() [3/4]

◆ getTangentVector1() [4/4]

◆ getTangentVector2() [1/4]

◆ getTangentVector2() [2/4]

◆ getTangentVector2() [3/4]

◆ getTangentVector2() [4/4]

◆ inheritGhostRank()

◆ numOfJumpEnrichments() [1/2]

◆ numOfJumpEnrichments() [2/2]

◆ setupRelatedObjectsInRelations()