#include <SinglePhaseFVM.hpp>
Inheritance diagram for geos::SinglePhaseFVM< BASE >:
Public Member Functions | |
| SinglePhaseFVM (const string &name, dataRepository::Group *const parent) | |
| main constructor for Group Objects More... | |
| SinglePhaseFVM ()=delete | |
| deleted default constructor | |
| SinglePhaseFVM (SinglePhaseFVM const &)=delete | |
| deleted copy constructor | |
| SinglePhaseFVM (SinglePhaseFVM &&)=default | |
| default move constructor | |
| SinglePhaseFVM & | operator= (SinglePhaseFVM const &)=delete |
| deleted assignment operator | |
| SinglePhaseFVM & | operator= (SinglePhaseFVM &&)=delete |
| deleted move operator | |
| virtual | ~SinglePhaseFVM () override=default |
| default destructor | |
| string | getCatalogName () const override |
| virtual void | setupDofs (DomainPartition const &domain, DofManager &dofManager) const override |
| Populate degree-of-freedom manager with fields relevant to this solver. More... | |
| virtual void | setupSystem (DomainPartition &domain, DofManager &dofManager, CRSMatrix< real64, globalIndex > &localMatrix, ParallelVector &rhs, ParallelVector &solution, bool const setSparsity=true) override |
| Set up the linear system (DOF indices and sparsity patterns) More... | |
| virtual void | applyBoundaryConditions (real64 const time_n, real64 const dt, DomainPartition &domain, DofManager const &dofManager, CRSMatrixView< real64, globalIndex const > const &localMatrix, arrayView1d< real64 > const &localRhs) override |
| apply boundary condition to system More... | |
| virtual real64 | calculateResidualNorm (real64 const &time_n, real64 const &dt, DomainPartition const &domain, DofManager const &dofManager, arrayView1d< real64 const > const &localRhs) override |
| calculate the norm of the global system residual More... | |
| virtual void | applySystemSolution (DofManager const &dofManager, arrayView1d< real64 const > const &localSolution, real64 const scalingFactor, real64 const dt, DomainPartition &domain) override |
| Function to apply the solution vector to the state. More... | |
| virtual void | assembleFluxTerms (real64 const dt, DomainPartition const &domain, DofManager const &dofManager, CRSMatrixView< real64, globalIndex const > const &localMatrix, arrayView1d< real64 > const &localRhs) override |
| assembles the flux terms for all cells More... | |
| virtual void | assembleStabilizedFluxTerms (real64 const dt, DomainPartition const &domain, DofManager const &dofManager, CRSMatrixView< real64, globalIndex const > const &localMatrix, arrayView1d< real64 > const &localRhs) override |
| assembles the flux terms for all cells including jump stabilization More... | |
| virtual void | assembleEDFMFluxTerms (real64 const time_n, real64 const dt, DomainPartition const &domain, DofManager const &dofManager, CRSMatrixView< real64, globalIndex const > const &localMatrix, arrayView1d< real64 > const &localRhs, string const &jumpDofKey) override final |
| assembles the flux terms for all cells for the poroelastic case More... | |
| virtual void | assembleHydrofracFluxTerms (real64 const time_n, real64 const dt, DomainPartition const &domain, DofManager const &dofManager, CRSMatrixView< real64, globalIndex const > const &localMatrix, arrayView1d< real64 > const &localRhs, CRSMatrixView< real64, localIndex const > const &dR_dAper) override final |
| assembles the flux terms for all cells for the hydrofracture case More... | |
| virtual void | applyAquiferBC (real64 const time, real64 const dt, DomainPartition &domain, DofManager const &dofManager, CRSMatrixView< real64, globalIndex const > const &localMatrix, arrayView1d< real64 > const &localRhs) const override |
| Apply aquifer boundary conditions to the system. More... | |
| virtual void | initializePreSubGroups () override |
| Called by Initialize() prior to initializing sub-Groups. | |
 Public Member Functions inherited from geos::SinglePhaseBase | |
| SinglePhaseBase (const string &name, Group *const parent) | |
| main constructor for Group Objects More... | |
| SinglePhaseBase ()=delete | |
| deleted default constructor | |
| SinglePhaseBase (SinglePhaseBase const &)=delete | |
| deleted copy constructor | |
| SinglePhaseBase (SinglePhaseBase &&)=default | |
| default move constructor | |
| SinglePhaseBase & | operator= (SinglePhaseBase const &)=delete |
| deleted assignment operator | |
| SinglePhaseBase & | operator= (SinglePhaseBase &&)=delete |
| deleted move operator | |
| virtual | ~SinglePhaseBase () override=default |
| default destructor | |
| virtual void | registerDataOnMesh (Group &meshBodies) override |
| Register wrappers that contain data on the mesh objects. More... | |
| virtual void | implicitStepSetup (real64 const &time_n, real64 const &dt, DomainPartition &domain) override |
| function to perform setup for implicit timestep More... | |
| virtual void | assembleSystem (real64 const time_n, real64 const dt, DomainPartition &domain, DofManager const &dofManager, CRSMatrixView< real64, globalIndex const > const &localMatrix, arrayView1d< real64 > const &localRhs) override |
| function to assemble the linear system matrix and rhs More... | |
| virtual real64 | scalingForSystemSolution (DomainPartition &domain, DofManager const &dofManager, arrayView1d< real64 const > const &localSolution) override |
| Function to determine if the solution vector should be scaled back in order to maintain a known constraint. More... | |
| virtual bool | checkSystemSolution (DomainPartition &domain, DofManager const &dofManager, arrayView1d< real64 const > const &localSolution, real64 const scalingFactor) override |
| Function to check system solution for physical consistency and constraint violation. More... | |
| virtual void | resetStateToBeginningOfStep (DomainPartition &domain) override |
| reset state of physics back to the beginning of the step. More... | |
| virtual void | implicitStepComplete (real64 const &time, real64 const &dt, DomainPartition &domain) override |
| perform cleanup for implicit timestep More... | |
| void | assembleAccumulationTerms (DomainPartition &domain, DofManager const &dofManager, CRSMatrixView< real64, globalIndex const > const &localMatrix, arrayView1d< real64 > const &localRhs) |
| assembles the accumulation terms for all cells More... | |
| template<typename SUBREGION_TYPE > | |
| void | accumulationAssemblyLaunch (DofManager const &dofManager, SUBREGION_TYPE const &subRegion, CRSMatrixView< real64, globalIndex const > const &localMatrix, arrayView1d< real64 > const &localRhs) |
| assembles the accumulation terms for all cells of a spcefici subRegion. More... | |
| void | applyDirichletBC (real64 const time_n, real64 const dt, DomainPartition &domain, DofManager const &dofManager, CRSMatrixView< real64, globalIndex const > const &localMatrix, arrayView1d< real64 > const &localRhs) const |
| Function to perform the Application of Dirichlet type BC's. More... | |
| void | applySourceFluxBC (real64 const time_n, real64 const dt, DomainPartition &domain, DofManager const &dofManager, CRSMatrixView< real64, globalIndex const > const &localMatrix, arrayView1d< real64 > const &localRhs) const |
| Apply source flux boundary conditions to the system. More... | |
| virtual void | updateState (DomainPartition &domain) override final |
| Recompute all dependent quantities from primary variables (including constitutive models) More... | |
| real64 | updateFluidState (ElementSubRegionBase &subRegion) const |
| Function to update all constitutive state and dependent variables. More... | |
| virtual void | updateFluidModel (ObjectManagerBase &dataGroup) const |
| Function to update all constitutive models. More... | |
| void | updateMass (ElementSubRegionBase &subRegion) const |
| Function to update fluid mass. More... | |
| void | updateEnergy (ElementSubRegionBase &subRegion) const |
| Function to update energy. More... | |
| void | updateSolidInternalEnergyModel (ObjectManagerBase &dataGroup) const |
| Update all relevant solid internal energy models using current values of temperature. More... | |
| void | updateThermalConductivity (ElementSubRegionBase &subRegion) const |
| Update thermal conductivity. More... | |
| void | updateMobility (ObjectManagerBase &dataGroup) const |
| Function to update fluid mobility. More... | |
| virtual void | initializePostInitialConditionsPreSubGroups () override |
| Called by InitializePostInitialConditions() prior to initializing sub-Groups. | |
| virtual void | initializeFluidState (MeshLevel &mesh, arrayView1d< string const > const ®ionNames) override |
| virtual void | initializeThermalState (MeshLevel &mesh, arrayView1d< string const > const ®ionNames) override |
| virtual void | computeHydrostaticEquilibrium (DomainPartition &domain) override |
| Compute the hydrostatic equilibrium using the compositions and temperature input tables. | |
| virtual void | updatePressureGradient (DomainPartition &domain) |
| Update the cell-wise pressure gradient. | |
| void | keepVariablesConstantDuringInitStep (real64 const time, real64 const dt, DofManager const &dofManager, DomainPartition &domain, CRSMatrixView< real64, globalIndex const > const &localMatrix, arrayView1d< real64 > const &localRhs) const |
| Function to fix the initial state during the initialization step in coupled problems. More... | |
| Public Member Functions inherited from geos::FlowSolverBase | |
| FlowSolverBase (const string &name, Group *const parent) | |
| main constructor for Group Objects More... | |
| FlowSolverBase ()=delete | |
| deleted default constructor | |
| FlowSolverBase (FlowSolverBase const &)=delete | |
| deleted copy constructor | |
| FlowSolverBase (FlowSolverBase &&)=default | |
| default move constructor | |
| FlowSolverBase & | operator= (FlowSolverBase const &)=delete |
| deleted assignment operator | |
| FlowSolverBase & | operator= (FlowSolverBase &&)=delete |
| deleted move operator | |
| void | prepareStencilWeights (DomainPartition &domain) const |
| Prepare the stencil weights by removing the contribution of the hydraulic aperture before the aperture is updated. More... | |
| void | updateStencilWeights (DomainPartition &domain) const |
| Update the stencil weights by adding the contribution of the hydraulic aperture after the aperture is updated. More... | |
| void | enableFixedStressPoromechanicsUpdate () |
| void | enableJumpStabilization () |
| void | updatePorosityAndPermeability (CellElementSubRegion &subRegion) const |
| virtual void | updatePorosityAndPermeability (SurfaceElementSubRegion &subRegion) const |
| virtual void | saveSequentialIterationState (DomainPartition &domain) override |
| Utility function to save the iteration state (useful for sequential simulations) More... | |
| integer & | isThermal () |
| virtual units::Unit | getMassUnit () const |
| void | allowNegativePressure () |
| Function to activate the flag allowing negative pressure. | |
| void | setKeepVariablesConstantDuringInitStep (bool const keepVariablesConstantDuringInitStep) |
| Utility function to keep the flow variables during a time step (used in poromechanics simulations) More... | |
| virtual bool | checkSequentialSolutionIncrements (DomainPartition &domain) const override |
| Check if the solution increments are ok to use. More... | |
| void | enableLaggingFractureStencilWeightsUpdate () |
| real64 | sumAquiferFluxes (BoundaryStencil const &stencil, AquiferBoundaryCondition::KernelWrapper const &aquiferBCWrapper, ElementViewConst< arrayView1d< real64 const > > const &pres, ElementViewConst< arrayView1d< real64 const > > const &presOld, ElementViewConst< arrayView1d< real64 const > > const &gravCoef, real64 const &timeAtBeginningOfStep, real64 const &dt) |
| void | findMinMaxElevationInEquilibriumTarget (DomainPartition &domain, std::map< string, localIndex > const &equilNameToEquilId, arrayView1d< real64 > const &maxElevation, arrayView1d< real64 > const &minElevation) const |
| For each equilibrium initial condition, loop over all the target cells and compute the min/max elevation. More... | |
| void | computeSourceFluxSizeScalingFactor (real64 const &time, real64 const &dt, DomainPartition &domain, std::map< string, localIndex > const &bcNameToBcId, arrayView1d< globalIndex > const &bcAllSetsSize) const |
| For each source flux boundary condition, loop over all the target cells and sum the owned cells. More... | |
| Public Member Functions inherited from geos::PhysicsSolverBase | |
| PhysicsSolverBase (string const &name, Group *const parent) | |
| Constructor for PhysicsSolverBase. More... | |
| PhysicsSolverBase (PhysicsSolverBase &&)=default | |
| Move constructor for PhysicsSolverBase. | |
| virtual | ~PhysicsSolverBase () override |
| Destructor for PhysicsSolverBase. | |
| PhysicsSolverBase ()=delete | |
| Deleted constructor. | |
| PhysicsSolverBase (PhysicsSolverBase const &)=delete | |
| Deleted copy constructor. | |
| PhysicsSolverBase & | operator= (PhysicsSolverBase const &)=delete |
| Deleted copy assignment operator. | |
| PhysicsSolverBase & | operator= (PhysicsSolverBase &&)=delete |
| Deleted move assignment operator. | |
| virtual void | initialize_postMeshGeneration () override |
| Initialization tasks after mesh generation is completed. | |
| void | generateMeshTargetsFromTargetRegions (Group const &meshBodies) |
| Generate mesh targets from target regions. More... | |
| virtual void | cleanup (real64 const time_n, integer const cycleNumber, integer const eventCounter, real64 const eventProgress, DomainPartition &domain) override |
| Called as the code exits the main run loop. More... | |
| virtual bool | execute (real64 const time_n, real64 const dt, integer const cycleNumber, integer const eventCounter, real64 const eventProgress, DomainPartition &domain) override |
| Main extension point of executable targets. More... | |
| ParallelMatrix & | getSystemMatrix () |
| Getter for system matrix. More... | |
| ParallelMatrix const & | getSystemMatrix () const |
| Getter for system rhs vector. More... | |
| ParallelVector & | getSystemRhs () |
| Getter for system rhs vector. More... | |
| ParallelVector const & | getSystemRhs () const |
| Getter for system rhs vector. More... | |
| ParallelVector & | getSystemSolution () |
| Getter for system solution vector. More... | |
| ParallelVector const & | getSystemSolution () const |
| Getter for system solution vector. More... | |
| DofManager & | getDofManager () |
| Getter for degree-of-freedom manager. More... | |
| DofManager const & | getDofManager () const |
| Getter for degree-of-freedom manager. More... | |
| CRSMatrix< real64, globalIndex > & | getLocalMatrix () |
| Getter for local matrix. More... | |
| CRSMatrixView< real64 const, globalIndex const > | getLocalMatrix () const |
| Getter for local matrix. More... | |
| virtual real64 | solverStep (real64 const &time_n, real64 const &dt, integer const cycleNumber, DomainPartition &domain) |
| entry function to perform a solver step More... | |
| virtual real64 | setNextDt (real64 const ¤tDt, DomainPartition &domain) |
| function to set the next time step size More... | |
| virtual real64 | setNextDtBasedOnNewtonIter (real64 const ¤tDt) |
| function to set the next time step size based on Newton convergence More... | |
| virtual real64 | setNextDtBasedOnStateChange (real64 const ¤tDt, DomainPartition &domain) |
| function to set the next dt based on state change More... | |
| virtual real64 | setNextDtBasedOnCFL (real64 const ¤tDt, DomainPartition &domain) |
| function to set the next dt based on state change More... | |
| virtual real64 | explicitStep (real64 const &time_n, real64 const &dt, integer const cycleNumber, DomainPartition &domain) |
| Entry function for an explicit time integration step. More... | |
| virtual real64 | nonlinearImplicitStep (real64 const &time_n, real64 const &dt, integer const cycleNumber, DomainPartition &domain) |
| Function for a nonlinear implicit integration step. More... | |
| virtual bool | lineSearch (real64 const &time_n, real64 const &dt, integer const cycleNumber, DomainPartition &domain, DofManager const &dofManager, CRSMatrixView< real64, globalIndex const > const &localMatrix, ParallelVector &rhs, ParallelVector &solution, real64 const scaleFactor, real64 &lastResidual) |
| Function to perform line search. More... | |
| virtual bool | lineSearchWithParabolicInterpolation (real64 const &time_n, real64 const &dt, integer const cycleNumber, DomainPartition &domain, DofManager const &dofManager, CRSMatrixView< real64, globalIndex const > const &localMatrix, ParallelVector &rhs, ParallelVector &solution, real64 const scaleFactor, real64 &lastResidual, real64 &residualNormT) |
| Function to perform line search using a parabolic interpolation to find the scaling factor. More... | |
| virtual real64 | linearImplicitStep (real64 const &time_n, real64 const &dt, integer const cycleNumber, DomainPartition &domain) |
| Function for a linear implicit integration step. More... | |
| void | debugOutputSystem (real64 const &time, integer const cycleNumber, integer const nonlinearIteration, ParallelMatrix const &matrix, ParallelVector const &rhs) const |
| Output the assembled linear system for debug purposes. More... | |
| void | debugOutputSolution (real64 const &time, integer const cycleNumber, integer const nonlinearIteration, ParallelVector const &solution) const |
| Output the linear system solution for debug purposes. More... | |
| virtual void | solveLinearSystem (DofManager const &dofManager, ParallelMatrix &matrix, ParallelVector &rhs, ParallelVector &solution) |
| function to apply a linear system solver to the assembled system. More... | |
| virtual bool | updateConfiguration (DomainPartition &domain) |
| updates the configuration (if needed) based on the state after a converged Newton loop. More... | |
| virtual void | outputConfigurationStatistics (DomainPartition const &domain) const |
| virtual void | resetConfigurationToBeginningOfStep (DomainPartition &domain) |
| resets the configuration to the beginning of the time-step. More... | |
| virtual bool | resetConfigurationToDefault (DomainPartition &domain) const |
| resets the configuration to the default value. More... | |
| virtual real64 | getTimestepRequest (real64 const) override |
| getter for the next timestep size More... | |
| real64 | getTimestepRequest () |
| getter for the next timestep size More... | |
| virtual Group * | createChild (string const &childKey, string const &childName) override |
| creates a child group of of this PhysicsSolverBase instantiation More... | |
| Timestamp | getSystemSetupTimestamp () const |
| getter for the timestamp of the system setup More... | |
| Timestamp | getMeshModificationTimestamp (DomainPartition &domain) const |
| getter for the timestamp of the mesh modification on the mesh levels More... | |
| void | setSystemSetupTimestamp (Timestamp timestamp) |
| set the timestamp of the system setup More... | |
| R1Tensor const | gravityVector () const |
| return the value of the gravity vector specified in PhysicsSolverManager More... | |
| LinearSolverParameters & | getLinearSolverParameters () |
| accessor for the linear solver parameters. More... | |
| LinearSolverParameters const & | getLinearSolverParameters () const |
| const accessor for the linear solver parameters. More... | |
| NonlinearSolverParameters & | getNonlinearSolverParameters () |
| accessor for the nonlinear solver parameters. More... | |
| NonlinearSolverParameters const & | getNonlinearSolverParameters () const |
| const accessor for the nonlinear solver parameters. More... | |
| virtual void | synchronizeNonlinearSolverParameters () |
| syncronize the nonlinear solver parameters. | |
| localIndex | targetRegionIndex (string const ®ionName) const |
| Get position of a given region within solver's target region list. More... | |
| template<typename LAMBDA > | |
| void | forDiscretizationOnMeshTargets (Group const &meshBodies, LAMBDA &&lambda) const |
| Loop over the target discretization on all mesh targets and apply callback. More... | |
| template<typename LAMBDA > | |
| void | forDiscretizationOnMeshTargets (Group &meshBodies, LAMBDA &&lambda) const |
| Loop over the target discretization on all mesh targets and apply callback. More... | |
| string | getDiscretizationName () const |
| return the name of the discretization object More... | |
| virtual bool | registerCallback (void *func, const std::type_info &funcType) final override |
| function to set the value of m_assemblyCallback More... | |
| SolverStatistics & | getSolverStatistics () |
| accessor for the solver statistics. More... | |
| SolverStatistics const & | getSolverStatistics () const |
| const accessor for the solver statistics. More... | |
| map< std::pair< string, string >, array1d< string > > const & | getMeshTargets () const |
| accessor for m_meshTargets More... | |
| Public Member Functions inherited from geos::ExecutableGroup | |
| virtual void | signalToPrepareForExecution (real64 const time_n, real64 const dt, integer const cycle, DomainPartition &domain) |
| Inform the object that it expects to execute during the next timestep. More... | |
| void | setTimesteppingBehavior (TimesteppingBehavior const timesteppingBehavior) |
| Set the timestep behavior for a target. More... | |
| TimesteppingBehavior | getTimesteppingBehavior () const |
| Get the target's time step behavior. More... | |
| Public Member Functions inherited from geos::dataRepository::Group | |
| template<typename LOG_LEVEL_INFO > | |
| std::enable_if_t< geos::is_log_level_info< LOG_LEVEL_INFO >, void > | addLogLevel () |
| Append a levelCondition and a log description to the description of the wrapped object given a log info struct. Must be called in constructor. More... | |
| virtual void | reinit () |
| Performs re-initialization of certain variable depending on the solver being used. | |
| Group (string const &name, Group *const parent) | |
| Constructor. More... | |
| Group (string const &name, conduit::Node &rootNode) | |
| Constructor. More... | |
| Group (Group &&source)=default | |
| Move constructor. More... | |
| virtual | ~Group () |
| Destructor, deletes all Groups and Wrappers owned by this Group. | |
| Group ()=delete | |
| Deleted default constructor. | |
| Group (Group const &)=delete | |
| Deleted copy constructor. | |
| Group & | operator= (Group const &)=delete |
| Deleted copy assignment operator. More... | |
| Group & | operator= (Group &&)=delete |
| Deleted move assignment operator. More... | |
| void | printDataHierarchy (integer indent=0) const |
| Prints the data hierarchy recursively. More... | |
| string | dumpInputOptions () const |
| string | dumpSubGroupsNames () const |
| string | dumpWrappersNames () const |
| template<typename T = Group> | |
| T & | registerGroup (string const &name, std::unique_ptr< T > newObject) |
| Register a new Group as a sub-group of current Group. More... | |
| template<typename T = Group> | |
| T & | registerGroup (string const &name, T *newObject) |
| Register a new Group as a sub-group of current Group. More... | |
| template<typename T = Group> | |
| T & | registerGroup (string const &name) |
| Register a new Group as a sub-group of current Group. More... | |
| template<typename T = Group> | |
| T & | registerGroup (subGroupMap::KeyIndex const &keyIndex) |
| Register a new Group as a sub-group of current Group. More... | |
| template<typename T = Group, typename TBASE = Group> | |
| T & | registerGroup (string const &name, string const &catalogName) |
| Register a new Group as a sub-group of current Group. More... | |
| void | deregisterGroup (string const &name) |
| Removes a child group from this group. More... | |
| template<typename T = Group, typename KEY = void> | |
| T * | getGroupPointer (KEY const &key) |
| Return a pointer to a sub-group of the current Group. More... | |
| template<typename T = Group, typename KEY = void> | |
| T const * | getGroupPointer (KEY const &key) const |
| Return a pointer to a sub-group of the current Group. More... | |
| template<typename T = Group, typename KEY = void> | |
| T & | getGroup (KEY const &key) |
| Return a reference to a sub-group of the current Group. More... | |
| template<typename T = Group, typename KEY = void> | |
| T const & | getGroup (KEY const &key) const |
| Return a reference to a sub-group of the current Group. More... | |
| template<typename T = Group> | |
| T & | getGroupByPath (string const &path) |
| Retrieve a group from the hierarchy using a path. More... | |
| template<typename T = Group> | |
| T const & | getGroupByPath (string const &path) const |
| Retrieve a group from the hierarchy using a path. More... | |
| subGroupMap & | getSubGroups () |
| Get the subgroups object. More... | |
| subGroupMap const & | getSubGroups () const |
| Get the subgroups object. More... | |
| localIndex | numSubGroups () const |
| return the number of sub groups in this Group More... | |
| std::vector< string > | getSubGroupsNames () const |
| template<typename T = Group> | |
| bool | hasGroup (string const &name) const |
| Check whether a sub-group exists. More... | |
| template<typename T > | |
| bool | hasSubGroupOfType () const |
| Check whether a sub-group exists by type. More... | |
| template<typename GROUPTYPE = Group, typename ... GROUPTYPES, typename LAMBDA > | |
| void | forSubGroups (LAMBDA &&lambda) |
| Apply the given functor to subgroups that can be casted to one of specified types. More... | |
| template<typename GROUPTYPE = Group, typename ... GROUPTYPES, typename LAMBDA > | |
| void | forSubGroups (LAMBDA &&lambda) const |
| Apply the given functor to subgroups that can be casted to one of specified types. More... | |
| template<typename GROUPTYPE = Group, typename ... GROUPTYPES, typename LAMBDA > | |
| void | forSubGroupsIndex (LAMBDA &&lambda) |
| Apply the given functor to subgroups that can be casted to one of specified types. More... | |
| template<typename GROUPTYPE = Group, typename ... GROUPTYPES, typename LAMBDA > | |
| void | forSubGroupsIndex (LAMBDA &&lambda) const |
| Apply the given functor to subgroups that can be casted to one of specified types. More... | |
| template<typename GROUPTYPE = Group, typename ... GROUPTYPES, typename LOOKUP_CONTAINER , typename LAMBDA > | |
| void | forSubGroups (LOOKUP_CONTAINER const &subGroupKeys, LAMBDA &&lambda) |
| Apply the given functor to subgroups that can be casted to one of specified types. More... | |
| template<typename GROUPTYPE = Group, typename ... GROUPTYPES, typename LOOKUP_CONTAINER , typename LAMBDA > | |
| void | forSubGroups (LOOKUP_CONTAINER const &subGroupKeys, LAMBDA &&lambda) const |
| Apply the given functor to subgroups that can be casted to one of specified types. More... | |
| template<typename LAMBDA > | |
| void | forWrappers (LAMBDA &&lambda) |
| Apply the given functor to wrappers. More... | |
| template<typename LAMBDA > | |
| void | forWrappers (LAMBDA &&lambda) const |
| Apply the given functor to wrappers. More... | |
| template<typename TYPE , typename ... TYPES, typename LAMBDA > | |
| void | forWrappers (LAMBDA &&lambda) |
| Apply the given functor to wrappers that can be cast to one of specified types. More... | |
| template<typename TYPE , typename ... TYPES, typename LAMBDA > | |
| void | forWrappers (LAMBDA &&lambda) const |
| Apply the given functor to wrappers that can be cast to one of specified types. More... | |
| void | initialize () |
| Run initialization functions on this and all subgroups. More... | |
| virtual void | initializationOrder (string_array &order) |
| Sets the initialization order for sub-Groups. More... | |
| void | initializePostInitialConditions () |
| Initialization routine to be called after calling ApplyInitialConditions(). More... | |
| void | postRestartInitializationRecursive () |
| Initialization routine to be called after calling reading a restart file. More... | |
| void | processInputFileRecursive (xmlWrapper::xmlDocument &xmlDocument, xmlWrapper::xmlNode &targetNode) |
Recursively read values using ProcessInputFile() from the input file and put them into the wrapped values for this group. Also add the includes content to the xmlDocument when Include nodes are encountered. More... | |
| void | processInputFileRecursive (xmlWrapper::xmlDocument &xmlDocument, xmlWrapper::xmlNode &targetNode, xmlWrapper::xmlNodePos const &nodePos) |
| Same as processInputFileRecursive(xmlWrapper::xmlDocument &, xmlWrapper::xmlNode &) but allow to reuse an existing xmlNodePos. More... | |
| void | postInputInitializationRecursive () |
| Recursively call postInputInitialization() to apply post processing after reading input values. | |
| template<typename T , typename TBASE = T> | |
| Wrapper< TBASE > & | registerWrapper (string const &name, wrapperMap::KeyIndex::index_type *const rkey=nullptr) |
| Create and register a Wrapper around a new object. More... | |
| template<typename T , typename TBASE = T> | |
| Wrapper< TBASE > & | registerWrapper (Group::wrapperMap::KeyIndex const &viewKey) |
| Create and register a Wrapper around a new object. More... | |
| template<typename T > | |
| Wrapper< T > & | registerWrapper (string const &name, std::unique_ptr< T > newObject) |
| Register a Wrapper around a given object and take ownership. More... | |
| template<typename T > | |
| Wrapper< T > & | registerWrapper (string const &name, T *newObject) |
| Register a Wrapper around an existing object, does not take ownership of the object. More... | |
| WrapperBase & | registerWrapper (std::unique_ptr< WrapperBase > wrapper) |
| Register and take ownership of an existing Wrapper. More... | |
| void | deregisterWrapper (string const &name) |
| Removes a Wrapper from this group. More... | |
| void | generateDataStructureSkeleton (integer const level) |
| Build a complete datastructure for schema generation. More... | |
| virtual void | expandObjectCatalogs () |
| Expand any catalogs in the data structure. | |
| virtual void | setSchemaDeviations (xmlWrapper::xmlNode schemaRoot, xmlWrapper::xmlNode schemaParent, integer documentationType) |
| Inform the schema generator of any deviations between the xml and GEOS data structures. More... | |
| virtual void | registerDataOnMeshRecursive (Group &meshBodies) |
| Calls RegisterDataOnMesh() recursively. More... | |
| virtual localIndex | packSize (string_array const &wrapperNames, integer const recursive, bool onDevice, parallelDeviceEvents &events) const |
| Get the size required to pack a list of wrappers. More... | |
| virtual localIndex | packSize (string_array const &wrapperNames, arrayView1d< localIndex const > const &packList, integer const recursive, bool onDevice, parallelDeviceEvents &events) const |
| Get the size required to pack a list of indices within a list of wrappers. More... | |
| localIndex | packSize (arrayView1d< localIndex const > const &packList, integer const recursive, bool onDevice, parallelDeviceEvents &events) const |
| Get the size required to pack a list of indices for all registered wrappers. More... | |
| virtual localIndex | pack (buffer_unit_type *&buffer, string_array const &wrapperNames, integer const recursive, bool onDevice, parallelDeviceEvents &events) const |
| Pack a list of wrappers to a buffer. More... | |
| virtual localIndex | pack (buffer_unit_type *&buffer, string_array const &wrapperNames, arrayView1d< localIndex const > const &packList, integer const recursive, bool onDevice, parallelDeviceEvents &events) const |
| Pack a list of indices within a list of wrappers. More... | |
| localIndex | pack (buffer_unit_type *&buffer, arrayView1d< localIndex const > const &packList, integer const recursive, bool onDevice, parallelDeviceEvents &events) const |
| Pack a list of indices for all registered wrappers. More... | |
| virtual localIndex | unpack (buffer_unit_type const *&buffer, arrayView1d< localIndex > &packList, integer const recursive, bool onDevice, parallelDeviceEvents &events, MPI_Op op=MPI_REPLACE) |
| Unpack a buffer. More... | |
| template<typename KEY > | |
| WrapperBase const & | getWrapperBase (KEY const &key) const |
| Return a reference to a WrapperBase stored in this group. More... | |
| template<typename KEY > | |
| WrapperBase & | getWrapperBase (KEY const &key) |
| Return a reference to a WrapperBase stored in this group. More... | |
| indexType | getWrapperIndex (string const &name) const |
| wrapperMap const & | wrappers () const |
| Get access to the internal wrapper storage. More... | |
| wrapperMap & | wrappers () |
| Get access to the internal wrapper storage. More... | |
| indexType | numWrappers () const |
| Return the number of wrappers. More... | |
| std::vector< string > | getWrappersNames () const |
| template<typename LOOKUP_TYPE > | |
| bool | hasWrapper (LOOKUP_TYPE const &lookup) const |
| Check if a wrapper exists. More... | |
| template<typename T , typename LOOKUP_TYPE > | |
| Wrapper< T > const & | getWrapper (LOOKUP_TYPE const &index) const |
| Retrieve a Wrapper stored in this group. More... | |
| template<typename T , typename LOOKUP_TYPE > | |
| Wrapper< T > & | getWrapper (LOOKUP_TYPE const &index) |
| Retrieve a Wrapper stored in this group. More... | |
| template<typename T , typename LOOKUP_TYPE > | |
| Wrapper< T > const * | getWrapperPointer (LOOKUP_TYPE const &index) const |
| Retrieve a Wrapper stored in this group. More... | |
| template<typename T , typename LOOKUP_TYPE > | |
| Wrapper< T > * | getWrapperPointer (LOOKUP_TYPE const &index) |
| Retrieve a Wrapper stored in this group. More... | |
| template<typename T , typename LOOKUP_TYPE > | |
| GEOS_DECLTYPE_AUTO_RETURN | getReference (LOOKUP_TYPE const &lookup) const |
| Look up a wrapper and get reference to wrapped object. More... | |
| template<typename T , typename LOOKUP_TYPE > | |
| T & | getReference (LOOKUP_TYPE const &lookup) |
| Look up a wrapper and get reference to wrapped object. More... | |
| virtual void | resize (localIndex const newSize) |
| Resize the group and all contained wrappers that resize with parent. More... | |
| virtual void | reserve (indexType const newsize) |
| Set the new capacity and reserve it in all wrappers that resize with parent. More... | |
| localIndex | capacity () const |
| Get the "capacity" of the group, which determines the capacity of resizable wrappers. More... | |
| localIndex | size () const |
| Get the "size" of the group, which determines the number of elements in resizable wrappers. More... | |
| string const & | getName () const |
| Get group name. More... | |
| string | getPath () const |
| Return the path of this Group in the data repository. Starts with '/' followed by the hierarchy of the children of the "Problem" in which the Group is. More... | |
| DataContext const & | getDataContext () const |
| template<typename KEY > | |
| DataContext const & | getWrapperDataContext (KEY key) const |
| Group & | getParent () |
| Access the group's parent. More... | |
| Group const & | getParent () const |
| Access the group's parent. More... | |
| bool | hasParent () const |
| localIndex | getIndexInParent () const |
| Get the group's index within its parent group. More... | |
| localIndex | getSubGroupIndex (keyType const &key) const |
| Get the index of a sub-Group within this group. More... | |
| int | sizedFromParent () const |
| Check whether this Group is resized when its parent is resized. More... | |
| Group & | setSizedFromParent (int val) |
| Set whether this wrapper is resized when its parent is resized. More... | |
| RestartFlags | getRestartFlags () const |
| Get flags that control restart output of this group. More... | |
| void | setRestartFlags (RestartFlags flags) |
| Set flags that control restart output of this group. More... | |
| InputFlags | getInputFlags () const |
| Get input flags for schema generation. More... | |
| void | setInputFlags (InputFlags flags) |
| Set input flags for schema generation. More... | |
| conduit::Node & | getConduitNode () |
| Return the Conduit node object associated with this group. More... | |
| conduit::Node const & | getConduitNode () const |
| Return the Conduit node object associated with this group. More... | |
| void | prepareToWrite () |
| Register the group and its wrappers with Conduit. | |
| void | finishWriting () |
| Write the group and its wrappers into Conduit. | |
| void | loadFromConduit () |
| Read the group and its wrappers from Conduit. | |
| void | enableLogLevelInput () |
| void | setLogLevel (integer const logLevel) |
| Set verbosity level. More... | |
| integer | getLogLevel () const |
Static Public Member Functions | |
| static string | catalogName () |
| name of the node manager in the object catalog More... | |
| Static Public Member Functions inherited from geos::FlowSolverBase | |
| static string | coupledSolverAttributePrefix () |
| String used to form the solverName used to register single-physics solvers in CoupledSolver. | |
| Static Public Member Functions inherited from geos::PhysicsSolverBase | |
| static CatalogInterface::CatalogType & | getCatalog () |
| Get the singleton catalog for PhysicsSolverBase. More... | |
| Static Public Member Functions inherited from geos::dataRepository::Group | |
| template<typename T0 , typename T1 , typename ... CASTTYPES, typename CONTAINERTYPE , typename LAMBDA > | |
| static bool | applyLambdaToContainer (CONTAINERTYPE &container, LAMBDA &&lambda) |
| Apply a given functor to a container if the container can be cast to one of the specified types. More... | |
| static CatalogInterface::CatalogType & | getCatalog () |
| Get the singleton catalog for this Group. More... | |
Additional Inherited Members | |
| Public Types inherited from geos::PhysicsSolverBase | |
| using | CatalogInterface = dataRepository::CatalogInterface< PhysicsSolverBase, string const &, Group *const > |
| Type alias for catalog interface used by this class. See CatalogInterface. | |
| Public Types inherited from geos::ExecutableGroup | |
| enum class | TimesteppingBehavior : integer { DeterminesTimeStepSize , DoesNotDetermineTimeStepSize } |
| Timestepping type. More... | |
| Public Types inherited from geos::dataRepository::Group | |
| using | subGroupMap = MappedVector< Group, Group *, keyType, indexType > |
| The template specialization of MappedVector to use for the collection of sub-Group objects. | |
| using | wrapperMap = MappedVector< WrapperBase, WrapperBase *, keyType, indexType > |
| The template specialization of MappedVector to use for the collection wrappers objects. | |
| using | CatalogInterface = dataRepository::CatalogInterface< Group, string const &, Group *const > |
| Type alias for catalog interface used by this class. See CatalogInterface. | |
| Protected Member Functions inherited from geos::SinglePhaseBase | |
| virtual void | validateConstitutiveModels (DomainPartition &domain) const |
| Checks constitutive models for consistency. More... | |
| void | initializeAquiferBC () const |
| Initialize the aquifer boundary condition (gravity vector, water phase index) | |
| virtual void | setConstitutiveNamesCallSuper (ElementSubRegionBase &subRegion) const override |
| This function sets constitutive name fields on an ElementSubRegionBase, and calls the base function it overrides. More... | |
| virtual void | saveConvergedState (ElementSubRegionBase &subRegion) const override |
| Utility function to save the converged state. More... | |
| virtual FluidPropViews | getFluidProperties (constitutive::ConstitutiveBase const &fluid) const |
| Extract properties from a fluid. More... | |
| virtual ThermalFluidPropViews | getThermalFluidProperties (constitutive::ConstitutiveBase const &fluid) const |
| Protected Member Functions inherited from geos::FlowSolverBase | |
| virtual void | saveAquiferConvergedState (real64 const &time, real64 const &dt, DomainPartition &domain) |
| Increment the cumulative flux from each aquifer. More... | |
| virtual void | validatePoreVolumes (DomainPartition const &domain) const |
| Helper function to compute/report the elements with small pore volumes. More... | |
| virtual void | precomputeData (MeshLevel &mesh, arrayView1d< string const > const ®ionNames) |
| void | initializeState (DomainPartition &domain) |
| void | initializePorosityAndPermeability (MeshLevel &mesh, arrayView1d< string const > const ®ionNames) |
| void | initializeHydraulicAperture (MeshLevel &mesh, const arrayView1d< const string > ®ionNames) |
| void | saveInitialPressureAndTemperature (MeshLevel &mesh, const arrayView1d< const string > ®ionNames) |
| Protected Member Functions inherited from geos::PhysicsSolverBase | |
| real64 | eisenstatWalker (real64 const newNewtonNorm, real64 const oldNewtonNorm, LinearSolverParameters::Krylov const &krylovParams) |
| Eisenstat-Walker adaptive tolerance. More... | |
| Protected Member Functions inherited from geos::dataRepository::Group | |
| virtual void | postInputInitialization () |
| virtual void | initializePostSubGroups () |
| Called by Initialize() after to initializing sub-Groups. | |
| virtual void | initializePostInitialConditionsPostSubGroups () |
| Called by InitializePostInitialConditions() after to initializing sub-Groups. | |
| virtual void | postRestartInitialization () |
| Performs initialization required after reading from a restart file. | |
| Static Protected Member Functions inherited from geos::PhysicsSolverBase | |
| template<typename CONSTITUTIVE_BASE_TYPE > | |
| static string | getConstitutiveName (ElementSubRegionBase const &subRegion) |
| Get the Constitutive Name object. More... | |
| template<typename CONSTITUTIVE_BASE_TYPE > | |
| static string | getConstitutiveName (ParticleSubRegionBase const &subRegion) |
| Get the Constitutive Name object. More... | |
| template<typename BASETYPE = constitutive::ConstitutiveBase, typename LOOKUP_TYPE > | |
| static BASETYPE const & | getConstitutiveModel (dataRepository::Group const &dataGroup, LOOKUP_TYPE const &key) |
| Get the Constitutive Model object. More... | |
| template<typename BASETYPE = constitutive::ConstitutiveBase, typename LOOKUP_TYPE > | |
| static BASETYPE & | getConstitutiveModel (dataRepository::Group &dataGroup, LOOKUP_TYPE const &key) |
| Get the Constitutive Model object. More... | |
| Protected Attributes inherited from geos::FlowSolverBase | |
| integer | m_numDofPerCell |
| the number of Degrees of Freedom per cell | |
| integer | m_isThermal |
| flag to determine whether or not this is a thermal simulation | |
| real64 | m_inputTemperature |
| the input temperature | |
| integer | m_keepVariablesConstantDuringInitStep |
| flag to freeze the initial state during initialization in coupled problems | |
| bool | m_isFixedStressPoromechanicsUpdate |
| enable the fixed stress poromechanics update of porosity | |
| bool | m_isJumpStabilized |
| enable pressure jump stabilzation for fixed-stress poromechanics | |
| integer | m_allowNegativePressure |
| flag if negative pressure is allowed | |
| real64 | m_maxAbsolutePresChange |
| maximum (absolute) pressure change in a Newton iteration | |
| real64 | m_sequentialPresChange |
| maximum (absolute) pressure change in a sequential iteration | |
| real64 | m_maxSequentialPresChange |
| real64 | m_sequentialTempChange |
| maximum (absolute) temperature change in a sequential iteration | |
| real64 | m_maxSequentialTempChange |
| Protected Attributes inherited from geos::PhysicsSolverBase | |
| real64 | m_cflFactor |
| Courant–Friedrichs–Lewy factor for the timestep. | |
| real64 | m_maxStableDt |
| maximum stable time step | |
| real64 | m_nextDt |
| timestep of the next cycle | |
| integer | m_numTimestepsSinceLastDtCut |
| Number of cycles since last timestep cut. | |
| string | m_discretizationName |
| name of the FV discretization object in the data repository | |
| DofManager | m_dofManager |
| Data structure to handle degrees of freedom. | |
| ParallelMatrix | m_matrix |
| System matrix. | |
| ParallelVector | m_rhs |
| System right-hand side vector. | |
| ParallelVector | m_solution |
| System solution vector. | |
| CRSMatrix< real64, globalIndex > | m_localMatrix |
| Local system matrix and rhs. | |
| std::unique_ptr< PreconditionerBase< LAInterface > > | m_precond |
| Custom preconditioner for the "native" iterative solver. | |
| integer | m_writeLinearSystem |
| flag for debug output of matrix, rhs, and solution | |
| LinearSolverParametersInput | m_linearSolverParameters |
| Linear solver parameters. | |
| LinearSolverResult | m_linearSolverResult |
| Result of the last linear solve. | |
| NonlinearSolverParameters | m_nonlinearSolverParameters |
| Nonlinear solver parameters. | |
| SolverStatistics | m_solverStatistics |
| Solver statistics. | |
| Timestamp | m_systemSetupTimestamp |
| Timestamp of the last call to setup system. | |
| std::function< void(CRSMatrix< real64, globalIndex >, array1d< real64 >) > | m_assemblyCallback |
| Callback function for assembly step. | |
| std::map< std::string, std::chrono::system_clock::duration > | m_timers |
| Timers for the aggregate profiling of the solver. | |
Detailed Description
template<typename BASE = SinglePhaseBase>
class geos::SinglePhaseFVM< BASE >
class to perform a single phase finite volume solve using only cell-centered variables works with both TPFA and MPFA
Definition at line 38 of file SinglePhaseFVM.hpp.
Constructor & Destructor Documentation
◆ SinglePhaseFVM()
template<typename BASE = SinglePhaseBase>
| geos::SinglePhaseFVM< BASE >::SinglePhaseFVM | ( | const string & | name, |
| dataRepository::Group *const | parent | ||
| ) |
main constructor for Group Objects
- Parameters
-
name the name of this instantiation of Group in the repository parent the parent group of this instantiation of Group
Member Function Documentation
◆ applyAquiferBC()
template<typename BASE = SinglePhaseBase>
|
overridevirtual |
Apply aquifer boundary conditions to the system.
- Parameters
-
time current time dt time step domain the domain dofManager degree-of-freedom manager associated with the linear system localMatrix local system matrix localRhs local system right-hand side vector
Implements geos::SinglePhaseBase.
◆ catalogName()
template<typename BASE = SinglePhaseBase>
|
inlinestatic |
name of the node manager in the object catalog
- Returns
- string that contains the catalog name to generate a new NodeManager object through the object catalog.
Definition at line 100 of file SinglePhaseFVM.hpp.
◆ getCatalogName()
template<typename BASE = SinglePhaseBase>
|
inlineoverridevirtual |
- Returns
- Get the final class Catalog name
Implements geos::PhysicsSolverBase.
Definition at line 119 of file SinglePhaseFVM.hpp.
The documentation for this class was generated from the following file:
- coreComponents/physicsSolvers/fluidFlow/SinglePhaseFVM.hpp
