The NodeManager class provides an interface to ObjectManagerBase in order to manage node data. More...

#include <NodeManager.hpp>

Inheritance diagram for geos::NodeManager:

Classes
struct	viewKeyStruct
	contains the added view access keys to be bound with class data member. More...

Public Types
using	EdgeMapType = InterObjectRelation< ArrayOfSets< localIndex > >
	nodeToEdge map type

using	FaceMapType = InterObjectRelation< ArrayOfSets< localIndex > >
	nodeToFace map type

using	ElemMapType = OrderedVariableToManyElementRelation
	nodeToElement map type

Public Types inherited from geos::ObjectManagerBase
using	CatalogInterface = dataRepository::CatalogInterface< ObjectManagerBase, string const &, dataRepository::Group *const >
	Nested type for the `factory` pattern, defining the base class (ObjectManagerBase) and the builder arguments (string const &, dataRepository::Group * const) of the derived products.

Public Types inherited from geos::dataRepository::Group
using	subGroupMap = MappedVector< Group, Group *, keyType, indexType >
	The template specialization of MappedVector to use for the collection of sub-Group objects.

using	wrapperMap = MappedVector< WrapperBase, WrapperBase *, keyType, indexType >
	The template specialization of MappedVector to use for the collection wrappers objects.

using	CatalogInterface = dataRepository::CatalogInterface< Group, string const &, Group *const >
	Type alias for catalog interface used by this class. See CatalogInterface.

Public Member Functions
virtual void	resize (localIndex const newsize) override
	Resize the NodeManager, and all its member vectors that relate nodes to faces, to edges, and to elements. More...

void	constructGlobalToLocalMap (CellBlockManagerABC const &cellBlockManager)
	Copies the local to global mapping from `cellBlockManager` and invert to create the global to local mapping. More...

void	buildSets (CellBlockManagerABC const &cellBlockManager, GeometricObjectManager const &geometries)
	Build sets from sources. More...

void	buildGeometricSets (GeometricObjectManager const &geometries)
	Build sets from geometric objects. More...

void	setDomainBoundaryObjects (FaceManager const &faceManager, EdgeManager const &edgeManager)
	Builds the node-on-domain-boundary indicator. More...

void	setGeometricalRelations (CellBlockManagerABC const &cellBlockManager, ElementRegionManager const &elemRegionManager, bool isBaseMeshLevel)
	Copies the nodes positions and the nodes to (edges\|faces\|elements) mappings from `cellBlockManager`. More...

void	setupRelatedObjectsInRelations (EdgeManager const &edgeManager, FaceManager const &faceManager, ElementRegionManager const &elemRegionManager)
	Link the current manager to other managers. More...

void	compressRelationMaps ()
	Compress all NodeManager member arrays so that the values of each array are contiguous with no extra capacity inbetween. More...

void	depopulateUpMaps (std::set< localIndex > const &receivedNodes, array2d< localIndex > const &edgesToNodes, ArrayOfArraysView< localIndex const > const &facesToNodes, ElementRegionManager const &elemRegionManager)
	Clean up the mappings between nodes and edges, faces, elements based on a new (updated) list of nodes, in order to keep only relevant mappings. More...

EdgeMapType const &	edgeList () const
	Provide an immutable accessor to the nodes-to-edges relation. More...

EdgeMapType &	edgeList ()
	Get a mutable accessor to the node-to-edges relation. More...

FaceMapType const &	faceList () const
	Provide a const accessor to the nodes-to-faces relation. More...

FaceMapType &	faceList ()
	Get the nodes-to-faces relation. More...

ElemMapType &	toElementRelation ()
	Get the nodes-to-elements relation. More...

ElemMapType const &	toElementRelation () const
	Provide a const accessor to the nodes-to-elements relation. More...

ArrayOfArrays< localIndex > &	elementRegionList ()
	Get the mutable nodes-to-elements-regions relation. More...

ArrayOfArraysView< localIndex const >	elementRegionList () const
	Provide an immutable arrayView to the nodes-to-elements-regions relation. More...

ArrayOfArrays< localIndex > &	elementSubRegionList ()
	Get the mutable nodes-to-elements-subregions relation. More...

ArrayOfArraysView< localIndex const >	elementSubRegionList () const
	Provide an immutable arrayView to the nodes-to-elements-subregions relation. More...

ArrayOfArrays< localIndex > &	elementList ()
	Get the mutable nodes-to-elements relation. More...

ArrayOfArraysView< localIndex const >	elementList () const
	Provide an immutable arrayView to the nodes-to-elements indices. More...

array2d< real64, nodes::REFERENCE_POSITION_PERM > &	referencePosition ()
	Get the mutable reference position array. This table will contain all the node coordinates. More...

arrayView2d< real64 const, nodes::REFERENCE_POSITION_USD >	referencePosition () const
	Provide an immutable arrayView of the reference position. This table will contain all the node coordinates. More...

virtual void	outputObjectConnectivity () const override final
	Function to output connectivity in order to assist debugging issues with object connectivity.

Constructors/destructor
	NodeManager (string const &name, dataRepository::Group *const parent)
	Main constructor for NodeManager Objects. More...

Packing methods
virtual localIndex	packUpDownMapsSize (arrayView1d< localIndex const > const &packList) const override
	Calculate the size that a list would have if it were packed, but without actually packing it. More...

virtual localIndex	packUpDownMaps (buffer_unit_type *&buffer, arrayView1d< localIndex const > const &packList) const override
	Packs an array of node indices into a buffer. More...

virtual localIndex	unpackUpDownMaps (buffer_unit_type const *&buffer, localIndex_array &packList, bool const overwriteUpMaps, bool const overwriteDownMaps) override
	Unpack a buffer to an array of node indices. More...

void	fixUpDownMaps (bool const clearIfUnmapped)
	Call fixUpDownMaps for nodes-to-edges and nodes-to-faces maps. More...

Public Member Functions inherited from geos::ObjectManagerBase
	ObjectManagerBase (string const &name, dataRepository::Group *const parent)
	Constructor. More...

	~ObjectManagerBase () override
	Destructor.

virtual localIndex	packSize (string_array const &wrapperNames, arrayView1d< localIndex const > const &packList, integer const recursive, bool onDevice, parallelDeviceEvents &events) const override
	Get the size required to pack a list of indices within a list of wrappers. More...

virtual localIndex	pack (buffer_unit_type *&buffer, string_array const &wrapperNames, arrayView1d< localIndex const > const &packList, integer const recursive, bool onDevice, parallelDeviceEvents &events) const override
	Pack a list of indices within a list of wrappers. More...

virtual localIndex	unpack (buffer_unit_type const *&buffer, arrayView1d< localIndex > &packList, integer const recursive, bool onDevice, parallelDeviceEvents &events, MPI_Op op=MPI_REPLACE) override
	Unpack a buffer. More...

template<bool DO_PACKING>
localIndex	packSets (buffer_unit_type *&buffer, arrayView1d< localIndex const > const &packList) const
	Packs the elements of each set that actually are in `packList`. More...

localIndex	unpackSets (buffer_unit_type const *&buffer)
	Unpack the content of `buffer` into the sets of the instance. More...

void	excludeWrappersFromPacking (std::set< string > const &wrapperNames)
	Registers wrappers that will be excluded from packing. More...

virtual localIndex	packGlobalMapsSize (arrayView1d< localIndex const > const &packList, integer const recursive) const
	Computes the pack size of the global maps elements in the @ packList. More...

virtual localIndex	packGlobalMaps (buffer_unit_type *&buffer, arrayView1d< localIndex const > const &packList, integer const recursive) const
	Packs the global maps elements in the @ packList. More...

void	setReceiveLists ()
	Clear and redefines the ghosts to receive.

virtual localIndex	unpackUpDownMaps (buffer_unit_type const *&buffer, array1d< localIndex > &packList, bool const overwriteUpMaps, bool const overwriteDownMaps)
	Unpacks the specific elements in the @ packList. More...

virtual localIndex	unpackGlobalMaps (buffer_unit_type const *&buffer, localIndex_array &packList, integer const recursive)
	Unpacks the global maps from `buffer`. More...

localIndex	packParentChildMapsSize (arrayView1d< localIndex const > const &packList) const
	Computes the pack size of the parent/child relations in `packList`. More...

localIndex	packParentChildMaps (buffer_unit_type *&buffer, arrayView1d< localIndex const > const &packList) const
	Packs the parent/child relations in `packList`. More...

localIndex	unpackParentChildMaps (buffer_unit_type const *&buffer, localIndex_array &packList)
	Unacks the parent/child relations in `packList`. More...

void	moveSets (LvArray::MemorySpace const targetSpace)
	Manually move all sets to a memory space. More...

localIndex	resize (localIndex const newSize, const bool)
	Resize the group and all contained wrappers that resize with parent. More...

SortedArray< localIndex > &	createSet (const string &newSetName)
	Creates a new set. More...

void	constructSetFromSetAndMap (SortedArrayView< localIndex const > const &inputSet, const array2d< localIndex > &map, const string &setName)
	Builds a new set on this instance given another objects set and the map between them. More...

void	constructSetFromSetAndMap (SortedArrayView< localIndex const > const &inputSet, const array1d< localIndex_array > &map, const string &setName)
	Builds a new set on this instance given another objects set and the map between them. More...

void	constructSetFromSetAndMap (SortedArrayView< localIndex const > const &inputSet, ArrayOfArraysView< localIndex const > const &map, const string &setName)
	Builds a new set on this instance given another objects set and the map between them. More...

void	constructGlobalToLocalMap ()
	Constructs the global to local map.

array1d< globalIndex >	constructGlobalListOfBoundaryObjects () const
	Computes the (global) index list that are domain boundaries. More...

virtual ArrayOfSets< globalIndex >	extractMapFromObjectForAssignGlobalIndexNumbers (ObjectManagerBase const &nodeManager)
	Extract map from object and assign global indices. More...

void	setGhostRankForSenders (int const neighborRank)
	Defines `neighborRank` ownership for ghost objects. More...

localIndex	getNumberOfGhosts () const
	Get the number of ghost objects. More...

localIndex	getNumberOfLocalIndices () const
	Get the number of locally owned objects. More...

integer	splitObject (localIndex const indexToSplit, int const rank, localIndex &newIndex)
	Split object to deal with topology changes. More...

void	inheritGhostRankFromParent (std::set< localIndex > const &indices)
	sets the value of m_ghostRank to the value of the objects parent. More...

void	copyObject (localIndex const source, localIndex const destination)
	Copy object from `source` to @ destination. More...

void	eraseObject (std::set< localIndex > const &indicesToErase)
	Erase object from this object manager. More...

virtual void	setMaxGlobalIndex ()
	Computes the maximum global index allong all the MPI ranks.

virtual void	enforceStateFieldConsistencyPostTopologyChange (std::set< localIndex > const &targetIndices)
	Updates the child and target indices after a topology change. More...

template<typename FIELD_TRAIT >
dataRepository::Wrapper< typename FIELD_TRAIT::type > &	registerField (string const &nameOfRegisteringObject)
	Register field with this ObjectManagerBase using a `dataRepository::Wrapper`. More...

template<typename FIELD_TRAIT >
dataRepository::Wrapper< typename FIELD_TRAIT::type > &	registerField (FIELD_TRAIT const &fieldTrait, typename FIELD_TRAIT::type *newObject)
	Helper function to register fields. More...

template<typename FIELD_TRAIT0 , typename FIELD_TRAIT1 , typename ... FIELD_TRAITS>
void	registerField (string const &nameOfRegisteringObject)
	Register a collection of fields with this ObjectManagerBase using a dataRepository::Wrapper. More...

template<typename FIELD_TRAIT >
GEOS_DECLTYPE_AUTO_RETURN	getField () const
	Get a view to the field associated with a trait from this `ObjectManagerBase`. More...

template<typename FIELD_TRAIT >
GEOS_DECLTYPE_AUTO_RETURN	getField ()
	Get the field associated with a trait from this `ObjectManagerBase`. More...

template<typename FIELD_TRAIT >
bool	hasField () const
	Checks if a field has been registered. More...

virtual viewKeyStruct &	viewKeys ()
	Get the view keys for Group access. More...

virtual viewKeyStruct const &	viewKeys () const
	Get the view keys for Group access, const version. More...

virtual groupKeyStruct &	groupKeys ()
	Get the group keys for Group access. More...

virtual groupKeyStruct const &	groupKeys () const
	Get the group keys for Group access, const version. More...

Group &	sets ()
	Get the group holding the object sets. More...

Group const &	sets () const
	Get the group holding the object sets, const version. More...

SortedArray< localIndex > &	getSet (string const &setName)
	Get a set by name. More...

SortedArrayView< localIndex const >	getSet (string const &setName) const
	Get a set by name, const version. More...

SortedArray< localIndex > &	externalSet ()
	Get the external set. More...

SortedArrayView< localIndex const >	externalSet () const
	Get the external set, const version. More...

void	updateGlobalToLocalMap (localIndex const lid)
	Updates (if needed) the global index for local index `lid`. More...

arrayView1d< globalIndex >	localToGlobalMap ()
	Get local to global map. More...

arrayView1d< globalIndex const >	localToGlobalMap () const
	Get local to global map, const version. More...

unordered_map< globalIndex, localIndex > const &	globalToLocalMap () const
	Get global to local map. More...

localIndex	globalToLocalMap (globalIndex const gid) const
	Retrieves the local index for given global index. More...

array1d< integer > const &	isExternal ()
	Get the locality information of the objects. More...

arrayView1d< integer const >	isExternal () const
	Get the locality information of the objects. More...

array1d< integer > const &	ghostRank ()
	Get the ghost information of each object. More...

arrayView1d< integer const >	ghostRank () const
	Get the ghost information of each object, const version. More...

NeighborData &	getNeighborData (int const rank)
	Get neighbor data for given `rank`. More...

NeighborData const &	getNeighborData (int const rank) const
	Get neighbor data for given `rank`, const version. More...

void	addNeighbor (int const rank)
	Add a neighbor for `rank`. More...

void	removeNeighbor (int const rank)
	Remove neighbor for `rank`. More...

globalIndex	localMaxGlobalIndex () const
	Get the local maximum global index on this rank. More...

globalIndex	maxGlobalIndex () const
	Get the maximum global index of all objects across all rank. See. More...

array1d< integer > &	getDomainBoundaryIndicator ()
	Get the domain boundary indicator. More...

arrayView1d< integer const >	getDomainBoundaryIndicator () const
	Get the domain boundary indicator. More...

Public Member Functions inherited from geos::dataRepository::Group
template<typename LOG_LEVEL_INFO >
std::enable_if_t< geos::is_log_level_info< LOG_LEVEL_INFO >, void >	addLogLevel ()
	Append a levelCondition and a log description to the description of the wrapped object given a log info struct. Must be called in constructor. More...

virtual bool	registerCallback (void *func, const std::type_info &funcType)
	Register a callback function on the group. More...

virtual void	reinit ()
	Performs re-initialization of certain variable depending on the solver being used.

	Group (string const &name, Group *const parent)
	Constructor. More...

	Group (string const &name, conduit::Node &rootNode)
	Constructor. More...

	Group (Group &&source)=default
	Move constructor. More...

virtual	~Group ()
	Destructor, deletes all Groups and Wrappers owned by this Group.

	Group ()=delete
	Deleted default constructor.

	Group (Group const &)=delete
	Deleted copy constructor.

Group &	operator= (Group const &)=delete
	Deleted copy assignment operator. More...

Group &	operator= (Group &&)=delete
	Deleted move assignment operator. More...

void	printDataHierarchy (integer indent=0) const
	Prints the data hierarchy recursively. More...

string	dumpInputOptions () const

string	dumpSubGroupsNames () const

string	dumpWrappersNames () const

template<typename T = Group>
T &	registerGroup (string const &name, std::unique_ptr< T > newObject)
	Register a new Group as a sub-group of current Group. More...

template<typename T = Group>
T &	registerGroup (string const &name, T *newObject)
	Register a new Group as a sub-group of current Group. More...

template<typename T = Group>
T &	registerGroup (string const &name)
	Register a new Group as a sub-group of current Group. More...

template<typename T = Group>
T &	registerGroup (subGroupMap::KeyIndex const &keyIndex)
	Register a new Group as a sub-group of current Group. More...

template<typename T = Group, typename TBASE = Group>
T &	registerGroup (string const &name, string const &catalogName)
	Register a new Group as a sub-group of current Group. More...

void	deregisterGroup (string const &name)
	Removes a child group from this group. More...

virtual Group *	createChild (string const &childKey, string const &childName)
	Creates a new sub-Group using the ObjectCatalog functionality. More...

template<typename T = Group, typename KEY = void>
T *	getGroupPointer (KEY const &key)
	Return a pointer to a sub-group of the current Group. More...

template<typename T = Group, typename KEY = void>
T const *	getGroupPointer (KEY const &key) const
	Return a pointer to a sub-group of the current Group. More...

template<typename T = Group, typename KEY = void>
T &	getGroup (KEY const &key)
	Return a reference to a sub-group of the current Group. More...

template<typename T = Group, typename KEY = void>
T const &	getGroup (KEY const &key) const
	Return a reference to a sub-group of the current Group. More...

template<typename T = Group>
T &	getGroupByPath (string const &path)
	Retrieve a group from the hierarchy using a path. More...

template<typename T = Group>
T const &	getGroupByPath (string const &path) const
	Retrieve a group from the hierarchy using a path. More...

subGroupMap &	getSubGroups ()
	Get the subgroups object. More...

subGroupMap const &	getSubGroups () const
	Get the subgroups object. More...

localIndex	numSubGroups () const
	return the number of sub groups in this Group More...

std::vector< string >	getSubGroupsNames () const

template<typename T = Group>
bool	hasGroup (string const &name) const
	Check whether a sub-group exists. More...

template<typename T >
bool	hasSubGroupOfType () const
	Check whether a sub-group exists by type. More...

template<typename GROUPTYPE = Group, typename ... GROUPTYPES, typename LAMBDA >
void	forSubGroups (LAMBDA &&lambda)
	Apply the given functor to subgroups that can be casted to one of specified types. More...

template<typename GROUPTYPE = Group, typename ... GROUPTYPES, typename LAMBDA >
void	forSubGroups (LAMBDA &&lambda) const
	Apply the given functor to subgroups that can be casted to one of specified types. More...

template<typename GROUPTYPE = Group, typename ... GROUPTYPES, typename LAMBDA >
void	forSubGroupsIndex (LAMBDA &&lambda)
	Apply the given functor to subgroups that can be casted to one of specified types. More...

template<typename GROUPTYPE = Group, typename ... GROUPTYPES, typename LAMBDA >
void	forSubGroupsIndex (LAMBDA &&lambda) const
	Apply the given functor to subgroups that can be casted to one of specified types. More...

template<typename GROUPTYPE = Group, typename ... GROUPTYPES, typename LOOKUP_CONTAINER , typename LAMBDA >
void	forSubGroups (LOOKUP_CONTAINER const &subGroupKeys, LAMBDA &&lambda)
	Apply the given functor to subgroups that can be casted to one of specified types. More...

template<typename GROUPTYPE = Group, typename ... GROUPTYPES, typename LOOKUP_CONTAINER , typename LAMBDA >
void	forSubGroups (LOOKUP_CONTAINER const &subGroupKeys, LAMBDA &&lambda) const
	Apply the given functor to subgroups that can be casted to one of specified types. More...

template<typename LAMBDA >
void	forWrappers (LAMBDA &&lambda)
	Apply the given functor to wrappers. More...

template<typename LAMBDA >
void	forWrappers (LAMBDA &&lambda) const
	Apply the given functor to wrappers. More...

template<typename TYPE , typename ... TYPES, typename LAMBDA >
void	forWrappers (LAMBDA &&lambda)
	Apply the given functor to wrappers that can be cast to one of specified types. More...

template<typename TYPE , typename ... TYPES, typename LAMBDA >
void	forWrappers (LAMBDA &&lambda) const
	Apply the given functor to wrappers that can be cast to one of specified types. More...

virtual void	initialize_postMeshGeneration ()
	initialization post generation of the mesh.

void	initialize ()
	Run initialization functions on this and all subgroups. More...

virtual void	initializationOrder (string_array &order)
	Sets the initialization order for sub-Groups. More...

void	initializePostInitialConditions ()
	Initialization routine to be called after calling ApplyInitialConditions(). More...

void	postRestartInitializationRecursive ()
	Initialization routine to be called after calling reading a restart file. More...

void	processInputFileRecursive (xmlWrapper::xmlDocument &xmlDocument, xmlWrapper::xmlNode &targetNode)
	Recursively read values using ProcessInputFile() from the input file and put them into the wrapped values for this group. Also add the includes content to the xmlDocument when `Include` nodes are encountered. More...

void	processInputFileRecursive (xmlWrapper::xmlDocument &xmlDocument, xmlWrapper::xmlNode &targetNode, xmlWrapper::xmlNodePos const &nodePos)
	Same as processInputFileRecursive(xmlWrapper::xmlDocument &, xmlWrapper::xmlNode &) but allow to reuse an existing xmlNodePos. More...

void	postInputInitializationRecursive ()
	Recursively call postInputInitialization() to apply post processing after reading input values.

template<typename T , typename TBASE = T>
Wrapper< TBASE > &	registerWrapper (string const &name, wrapperMap::KeyIndex::index_type *const rkey=nullptr)
	Create and register a Wrapper around a new object. More...

template<typename T , typename TBASE = T>
Wrapper< TBASE > &	registerWrapper (Group::wrapperMap::KeyIndex const &viewKey)
	Create and register a Wrapper around a new object. More...

template<typename T >
Wrapper< T > &	registerWrapper (string const &name, std::unique_ptr< T > newObject)
	Register a Wrapper around a given object and take ownership. More...

template<typename T >
Wrapper< T > &	registerWrapper (string const &name, T *newObject)
	Register a Wrapper around an existing object, does not take ownership of the object. More...

WrapperBase &	registerWrapper (std::unique_ptr< WrapperBase > wrapper)
	Register and take ownership of an existing Wrapper. More...

void	deregisterWrapper (string const &name)
	Removes a Wrapper from this group. More...

void	generateDataStructureSkeleton (integer const level)
	Build a complete datastructure for schema generation. More...

virtual void	expandObjectCatalogs ()
	Expand any catalogs in the data structure.

virtual void	setSchemaDeviations (xmlWrapper::xmlNode schemaRoot, xmlWrapper::xmlNode schemaParent, integer documentationType)
	Inform the schema generator of any deviations between the xml and GEOS data structures. More...

virtual void	registerDataOnMeshRecursive (Group &meshBodies)
	Calls RegisterDataOnMesh() recursively. More...

virtual void	registerDataOnMesh (Group &meshBodies)
	Register data on mesh entities. More...

virtual localIndex	packSize (string_array const &wrapperNames, integer const recursive, bool onDevice, parallelDeviceEvents &events) const
	Get the size required to pack a list of wrappers. More...

localIndex	packSize (arrayView1d< localIndex const > const &packList, integer const recursive, bool onDevice, parallelDeviceEvents &events) const
	Get the size required to pack a list of indices for all registered wrappers. More...

virtual localIndex	pack (buffer_unit_type *&buffer, string_array const &wrapperNames, integer const recursive, bool onDevice, parallelDeviceEvents &events) const
	Pack a list of wrappers to a buffer. More...

localIndex	pack (buffer_unit_type *&buffer, arrayView1d< localIndex const > const &packList, integer const recursive, bool onDevice, parallelDeviceEvents &events) const
	Pack a list of indices for all registered wrappers. More...

template<typename KEY >
WrapperBase const &	getWrapperBase (KEY const &key) const
	Return a reference to a WrapperBase stored in this group. More...

template<typename KEY >
WrapperBase &	getWrapperBase (KEY const &key)
	Return a reference to a WrapperBase stored in this group. More...

indexType	getWrapperIndex (string const &name) const

wrapperMap const &	wrappers () const
	Get access to the internal wrapper storage. More...

wrapperMap &	wrappers ()
	Get access to the internal wrapper storage. More...

indexType	numWrappers () const
	Return the number of wrappers. More...

std::vector< string >	getWrappersNames () const

template<typename LOOKUP_TYPE >
bool	hasWrapper (LOOKUP_TYPE const &lookup) const
	Check if a wrapper exists. More...

template<typename T , typename LOOKUP_TYPE >
Wrapper< T > const &	getWrapper (LOOKUP_TYPE const &index) const
	Retrieve a Wrapper stored in this group. More...

template<typename T , typename LOOKUP_TYPE >
Wrapper< T > &	getWrapper (LOOKUP_TYPE const &index)
	Retrieve a Wrapper stored in this group. More...

template<typename T , typename LOOKUP_TYPE >
Wrapper< T > const *	getWrapperPointer (LOOKUP_TYPE const &index) const
	Retrieve a Wrapper stored in this group. More...

template<typename T , typename LOOKUP_TYPE >
Wrapper< T > *	getWrapperPointer (LOOKUP_TYPE const &index)
	Retrieve a Wrapper stored in this group. More...

template<typename T , typename LOOKUP_TYPE >
GEOS_DECLTYPE_AUTO_RETURN	getReference (LOOKUP_TYPE const &lookup) const
	Look up a wrapper and get reference to wrapped object. More...

template<typename T , typename LOOKUP_TYPE >
T &	getReference (LOOKUP_TYPE const &lookup)
	Look up a wrapper and get reference to wrapped object. More...

virtual void	reserve (indexType const newsize)
	Set the new capacity and reserve it in all wrappers that resize with parent. More...

localIndex	capacity () const
	Get the "capacity" of the group, which determines the capacity of resizable wrappers. More...

localIndex	size () const
	Get the "size" of the group, which determines the number of elements in resizable wrappers. More...

string const &	getName () const
	Get group name. More...

string	getPath () const
	Return the path of this Group in the data repository. Starts with '/' followed by the hierarchy of the children of the "Problem" in which the Group is. More...

DataContext const &	getDataContext () const

template<typename KEY >
DataContext const &	getWrapperDataContext (KEY key) const

Group &	getParent ()
	Access the group's parent. More...

Group const &	getParent () const
	Access the group's parent. More...

bool	hasParent () const

localIndex	getIndexInParent () const
	Get the group's index within its parent group. More...

localIndex	getSubGroupIndex (keyType const &key) const
	Get the index of a sub-Group within this group. More...

int	sizedFromParent () const
	Check whether this Group is resized when its parent is resized. More...

Group &	setSizedFromParent (int val)
	Set whether this wrapper is resized when its parent is resized. More...

RestartFlags	getRestartFlags () const
	Get flags that control restart output of this group. More...

void	setRestartFlags (RestartFlags flags)
	Set flags that control restart output of this group. More...

InputFlags	getInputFlags () const
	Get input flags for schema generation. More...

void	setInputFlags (InputFlags flags)
	Set input flags for schema generation. More...

conduit::Node &	getConduitNode ()
	Return the Conduit node object associated with this group. More...

conduit::Node const &	getConduitNode () const
	Return the Conduit node object associated with this group. More...

void	prepareToWrite ()
	Register the group and its wrappers with Conduit.

void	finishWriting ()
	Write the group and its wrappers into Conduit.

void	loadFromConduit ()
	Read the group and its wrappers from Conduit.

void	enableLogLevelInput ()

void	setLogLevel (integer const logLevel)
	Set verbosity level. More...

integer	getLogLevel () const

Static Public Member Functions
static constexpr localIndex	getEdgeMapOverallocation ()
	return default size of the value array in the node-to-edge mapping More...

static constexpr localIndex	getFaceMapOverallocation ()
	return default size of the value in the node-to-face mapping More...

static constexpr localIndex	getElemMapOverAllocation ()
	return default size of the value array in the node-to-element mapping More...

Static Public Member Functions inherited from geos::ObjectManagerBase
template<typename TYPE_RELATION >
static void	fixUpDownMaps (TYPE_RELATION &relation, map< localIndex, array1d< globalIndex > > &unmappedIndices, bool const clearIfUnmapped)
	Fixing the up/down maps by mapping the unmapped indices. More...

template<typename TYPE_RELATION >
static void	fixUpDownMaps (TYPE_RELATION &relation, map< localIndex, SortedArray< globalIndex > > &unmappedIndices, bool const clearIfUnmapped)
	Fixing the up/down maps by mapping the unmapped indices. More...

static void	fixUpDownMaps (ArrayOfSets< localIndex > &relation, unordered_map< globalIndex, localIndex > const &globalToLocal, map< localIndex, SortedArray< globalIndex > > &unmappedIndices, bool const clearIfUnmapped)
	Fixing the up/down maps by mapping the unmapped indices. More...

static void	cleanUpMap (std::set< localIndex > const &targetIndices, array1d< SortedArray< localIndex > > &upmap, arrayView2d< localIndex const > const &downmap)
	Removes from the list of arrays of `upmap` all the elements for which the "mirror target array" of `downmap` does not contain the proper target index. More...

static void	cleanUpMap (std::set< localIndex > const &targetIndices, ArrayOfSetsView< localIndex > const &upmap, arrayView2d< localIndex const > const &downmap)
	Removes from the list of sets of `upmap` all the elements for which the "mirror target array" of `downmap` does not contain the proper target index. More...

static void	cleanUpMap (std::set< localIndex > const &targetIndices, array1d< SortedArray< localIndex > > &upmap, arrayView1d< arrayView1d< localIndex const > const > const &downmap)
	Removes from the list of arrays of `upmap` all the elements for which the "mirror target array" of `downmap` does not contain the proper target index. More...

static void	cleanUpMap (std::set< localIndex > const &targetIndices, ArrayOfSetsView< localIndex > const &upmap, arrayView1d< arrayView1d< localIndex const > const > const &downmap)
	Removes from the list of sets of `upmap` all the elements for which the "mirror target array" of `downmap` does not contain the proper target index. More...

static void	cleanUpMap (std::set< localIndex > const &targetIndices, ArrayOfSetsView< localIndex > const &upmap, ArrayOfArraysView< localIndex const > const &downmap)
	Removes from the list of sets of `upmap` all the elements for which the "mirror target array" of `downmap` does not contain the proper target index. More...

static localIndex	getParentRecursive (arraySlice1d< localIndex const > const &parentIndices, localIndex const lookup)
	Get the upmost parent. More...

static CatalogInterface::CatalogType &	getCatalog ()
	Acessing the unique instance of this catalog. More...

Static Public Member Functions inherited from geos::dataRepository::Group
template<typename T0 , typename T1 , typename ... CASTTYPES, typename CONTAINERTYPE , typename LAMBDA >
static bool	applyLambdaToContainer (CONTAINERTYPE &container, LAMBDA &&lambda)
	Apply a given functor to a container if the container can be cast to one of the specified types. More...

static CatalogInterface::CatalogType &	getCatalog ()
	Get the singleton catalog for this Group. More...

Public Attributes
viewKeyStruct/groupKeyStruct
geos::NodeManager::viewKeyStruct	viewKeys
	viewKeys

Public Attributes inherited from geos::ObjectManagerBase
struct geos::ObjectManagerBase::viewKeyStruct	m_ObjectManagerBaseViewKeys
	viewKey struct for the ObjectManagerBase class

struct geos::ObjectManagerBase::groupKeyStruct	m_ObjectManagerBaseGroupKeys
	groupKey struct for the ObjectManagerBase class

Static Factory Catalog Functions
static string	catalogName ()
	Return the name of the node manager in the object catalog. More...

string	getCatalogName () const override final
	Provide a virtual access to catalogName(). More...

Additional Inherited Members
Protected Member Functions inherited from geos::dataRepository::Group
virtual void	postInputInitialization ()

virtual void	initializePreSubGroups ()
	Called by Initialize() prior to initializing sub-Groups.

virtual void	initializePostSubGroups ()
	Called by Initialize() after to initializing sub-Groups.

virtual void	initializePostInitialConditionsPreSubGroups ()
	Called by InitializePostInitialConditions() prior to initializing sub-Groups.

virtual void	initializePostInitialConditionsPostSubGroups ()
	Called by InitializePostInitialConditions() after to initializing sub-Groups.

virtual void	postRestartInitialization ()
	Performs initialization required after reading from a restart file.

Protected Attributes inherited from geos::ObjectManagerBase
Group	m_sets
	Group that holds object sets.

std::set< string >	m_packingExclusionList
	Names of the wrappers that should not be packed.

Group	m_neighborGroup
	Group that holds all the NeighborData objects.

array1d< globalIndex >	m_localToGlobalMap
	Contains the global index of each object.

unordered_map< globalIndex, localIndex >	m_globalToLocalMap
	Map from object global index to the local index.

array1d< integer >	m_isExternal
	Array that holds if an object is external.

array1d< integer >	m_domainBoundaryIndicator
	Domain boundary indicator: 1 means the "index" is on the boundary.

array1d< integer >	m_ghostRank
	Array that holds the ghost information about each object. More...

unordered_map< int, NeighborData >	m_neighborData
	A map from rank to the associated NeighborData object.

real64	m_overAllocationFactor = 1.1
	Factor by which to overallocate when adding objects.

globalIndex	m_maxGlobalIndex = -1
	The maximum global index of all objects across all rank.

globalIndex	m_localMaxGlobalIndex = -1
	The maximum global index of any object of all objects on this rank.

Detailed Description

The NodeManager class provides an interface to ObjectManagerBase in order to manage node data.

The NodeManagerT class manages the node data using the ObjectDataStructureBaseT as a data manager. This means that each field is stored in an array where each array entry corresponds to a node.

Definition at line 45 of file NodeManager.hpp.

Constructor & Destructor Documentation

◆ NodeManager()

geos::NodeManager::NodeManager	(	string const &	name,
		dataRepository::Group *const	parent
	)

Main constructor for NodeManager Objects.

Parameters

[in]	name	the name of this instantiation of NodeManager
[in]	parent	the parent group of this instantiation of NodeManager

Member Function Documentation

◆ buildGeometricSets()

void geos::NodeManager::buildGeometricSets ( GeometricObjectManager const & geometries )

Build sets from geometric objects.

Parameters

geometries Provides other nodes sets, with some filtering based on node coordinates.

◆ buildSets()

void geos::NodeManager::buildSets	(	CellBlockManagerABC const &	cellBlockManager,
		GeometricObjectManager const &	geometries
	)

Build sets from sources.

Parameters

cellBlockManager	Provides some node sets.
geometries	Provides other nodes sets, with some filtering based on node coordinates.

◆ catalogName()

static string geos::NodeManager::catalogName ( )

inlinestatic

Return the name of the node manager in the object catalog.

Returns: string that contains the NodeManager catalog name

Definition at line 117 of file NodeManager.hpp.

◆ compressRelationMaps()

void geos::NodeManager::compressRelationMaps ( )

Compress all NodeManager member arrays so that the values of each array are contiguous with no extra capacity inbetween.

Note: The method used here on each arrays (compress) does not free any memory.

◆ constructGlobalToLocalMap()

void geos::NodeManager::constructGlobalToLocalMap ( CellBlockManagerABC const & cellBlockManager )

Copies the local to global mapping from cellBlockManager and invert to create the global to local mapping.

Parameters

cellBlockManager Provides the local to global mapping.

◆ depopulateUpMaps()

void geos::NodeManager::depopulateUpMaps	(	std::set< localIndex > const &	receivedNodes,
		array2d< localIndex > const &	edgesToNodes,
		ArrayOfArraysView< localIndex const > const &	facesToNodes,
		ElementRegionManager const &	elemRegionManager
	)

Clean up the mappings between nodes and edges, faces, elements based on a new (updated) list of nodes, in order to keep only relevant mappings.

Parameters

[in]	receivedNodes	the new list of target node indices
[in]	edgesToNodes	map to go from edges to nodes
[in]	facesToNodes	map to go from faces to nodes
[in]	elemRegionManager	Element Region Manager

◆ fixUpDownMaps()

void geos::NodeManager::fixUpDownMaps ( bool const clearIfUnmapped )

Call fixUpDownMaps for nodes-to-edges and nodes-to-faces maps.

Packed data are meant to be communicated to other MPI ranks

Parameters

[in] clearIfUnmapped boolean: true to remove if it is not mapped

◆ getCatalogName()

string geos::NodeManager::getCatalogName ( ) const

inlinefinaloverridevirtual

Provide a virtual access to catalogName().

Returns: string that contains the NodeManager catalog name

Implements geos::ObjectManagerBase.

Definition at line 124 of file NodeManager.hpp.

◆ getEdgeMapOverallocation()

static constexpr localIndex geos::NodeManager::getEdgeMapOverallocation ( )

inlinestaticconstexpr

return default size of the value array in the node-to-edge mapping

Returns: default size of value array in the node-to-edge mapping

Note: Value forwarding is due to refactoring.

Definition at line 67 of file NodeManager.hpp.

◆ getElemMapOverAllocation()

static constexpr localIndex geos::NodeManager::getElemMapOverAllocation ( )

inlinestaticconstexpr

return default size of the value array in the node-to-element mapping

Returns: default size of value array in the node-to-element mapping

Definition at line 83 of file NodeManager.hpp.

◆ getFaceMapOverallocation()

static constexpr localIndex geos::NodeManager::getFaceMapOverallocation ( )

inlinestaticconstexpr

return default size of the value in the node-to-face mapping

Returns: default size of value array in the node-to-face mapping

Note: Value forwarding is due to refactoring.

Definition at line 76 of file NodeManager.hpp.

◆ packUpDownMaps()

virtual localIndex geos::NodeManager::packUpDownMaps	(	buffer_unit_type *&	buffer,
		arrayView1d< localIndex const > const &	packList
	)		const

overridevirtual

Packs an array of node indices into a buffer.

Packed data are meant to be communicated to other MPI ranks

Parameters

[in,out]	buffer	buffer to pack the node index data into
[in]	packList	the indices of nodes that should be packed

Returns: a localIndex value representing the size of the packed data

Reimplemented from geos::ObjectManagerBase.

◆ packUpDownMapsSize()

virtual localIndex geos::NodeManager::packUpDownMapsSize ( arrayView1d< localIndex const > const & packList ) const

overridevirtual

Calculate the size that a list would have if it were packed, but without actually packing it.

Packed data are meant to be communicated to other MPI ranks

Parameters

[in] packList the list of node indices that we wish to get the size of after packing

Returns: a localIndex value representing the size of packList if it were packed

Note: This function does not perform any packing, it just evaluates and returns the possible packed size.

Reimplemented from geos::ObjectManagerBase.

◆ resize()

virtual void geos::NodeManager::resize ( localIndex const newsize )

overridevirtual

Resize the NodeManager, and all its member vectors that relate nodes to faces, to edges, and to elements.

the size of the NodeManager is the number of nodes

Parameters

[in] newsize the new size of the NodeManager

Reimplemented from geos::dataRepository::Group.

◆ setDomainBoundaryObjects()

void geos::NodeManager::setDomainBoundaryObjects	(	FaceManager const &	faceManager,
		EdgeManager const &	edgeManager
	)

Builds the node-on-domain-boundary indicator.

Parameters

[in]	faceManager	The computation is based on the face-on-domain-boundary indicator.
[in]	edgeManager	The edge manager.

See also: ObjectManagerBase::getDomainBoundaryIndicator()

◆ setGeometricalRelations()

void geos::NodeManager::setGeometricalRelations	(	CellBlockManagerABC const &	cellBlockManager,
		ElementRegionManager const &	elemRegionManager,
		bool	isBaseMeshLevel
	)

Copies the nodes positions and the nodes to (edges|faces|elements) mappings from cellBlockManager.

Parameters

[in]	cellBlockManager	Will provide the mappings.
[in]	elemRegionManager	element region manager, needed to map blocks to subregion
[in]	isBaseMeshLevel	flag that indicates if we are operating on the base mesh level or on another mesh level

◆ setupRelatedObjectsInRelations()

void geos::NodeManager::setupRelatedObjectsInRelations	(	EdgeManager const &	edgeManager,
		FaceManager const &	faceManager,
		ElementRegionManager const &	elemRegionManager
	)

Link the current manager to other managers.

Parameters

edgeManager	The edge manager instance.
faceManager	The face manager instance.
elemRegionManager	The element region manager instance.

◆ unpackUpDownMaps()

virtual localIndex geos::NodeManager::unpackUpDownMaps	(	buffer_unit_type const *&	buffer,
		localIndex_array &	packList,
		bool const	overwriteUpMaps,
		bool const	overwriteDownMaps
	)

overridevirtual

Unpack a buffer to an array of node indices.

Packed data are meant to be communicated to other MPI ranks

Parameters

[in]	buffer	buffer with the packed data
[in,out]	packList	an array of localIndex values that we wish to unpack to
[in]	overwriteUpMaps	boolean: true to overwrite the previous Up maps
[in]	overwriteDownMaps	boolean: true to overwrite the previous Down maps

Returns: a localIndex value representing the size of the unpacked list

The documentation for this class was generated from the following file:

coreComponents/mesh/NodeManager.hpp

Classes

Public Types

Public Member Functions

Static Public Member Functions

Public Attributes

Static Factory Catalog Functions

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

◆ NodeManager()

Member Function Documentation

◆ buildGeometricSets()

◆ buildSets()

◆ catalogName()

◆ compressRelationMaps()

◆ constructGlobalToLocalMap()

◆ depopulateUpMaps()

◆ fixUpDownMaps()

◆ getCatalogName()

◆ getEdgeMapOverallocation()

◆ getElemMapOverAllocation()

◆ getFaceMapOverallocation()

◆ packUpDownMaps()

◆ packUpDownMapsSize()

◆ resize()

◆ setDomainBoundaryObjects()

◆ setGeometricalRelations()

◆ setupRelatedObjectsInRelations()

◆ unpackUpDownMaps()