GEOS
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#include <ParticleBlock.hpp>
Public Member Functions | |
Constructor / Destructor | |
ParticleBlock ()=delete | |
ParticleBlock (string const &name, Group *const parent) | |
Constructor for this class. More... | |
ParticleBlock (const ParticleBlock &init)=delete | |
Copy constructor. More... | |
~ParticleBlock () | |
Default destructor. | |
Getters / Setters | |
void | setParticleType (ParticleType particleType) |
Defines the underlying particle type (hex, tet...) More... | |
ParticleType | getParticleType () const override |
Get the type of particle in this subregion. More... | |
array1d< globalIndex > | getParticleID () const override |
Get the list of particle global IDs in this subregion. More... | |
void | setParticleID (array1d< globalIndex > const particleID) |
Sets the global IDs of particles in this subregion. More... | |
array2d< real64 > | getParticleCenter () const override |
Get the list of particle center locations in this subregion. More... | |
void | setParticleCenter (array2d< real64 > const particleCenter) |
Set the list of particle center locations in this subregion. More... | |
array2d< real64 > | getParticleVelocity () const override |
Get the list of particle velocities in this subregion. More... | |
void | setParticleVelocity (array2d< real64 > const particleVelocity) |
Set the list of particle velocities in this subregion. More... | |
array2d< real64 > | getParticleMaterialDirection () const override |
Get the list of particle material directions in this subregion. More... | |
void | setParticleMaterialDirection (array2d< real64 > const particleMaterialDirection) |
Set the list of material directions in this subregion. More... | |
array1d< int > | getParticleGroup () const override |
Get the list of particle group numbers (for contact) in this subregion. More... | |
void | setParticleGroup (array1d< int > const particleGroup) |
Set the list of particle group numbers (for contact) in this subregion. More... | |
array1d< int > | getParticleSurfaceFlag () const override |
Get the list of particle surface flag values in this subregion. More... | |
void | setParticleSurfaceFlag (array1d< int > const particleSurfaceFlag) |
Set the list of particle surface flags in this subregion. More... | |
array1d< real64 > | getParticleDamage () const override |
Get the list of particle damage values in this subregion. More... | |
void | setParticleDamage (array1d< real64 > const particleDamage) |
Set the list of particle damage values in this subregion. More... | |
array1d< real64 > | getParticleStrengthScale () const override |
Get the list of particle strength scale values in this subregion. More... | |
void | setParticleStrengthScale (array1d< real64 > const particleStrengthScale) |
Set the list of particle strength scale values in this subregion. More... | |
array1d< real64 > | getParticleVolume () const override |
Get the list of particle volumes in this subregion. More... | |
void | setParticleVolume (array1d< real64 > const particleVolume) |
Set the list of particle volumes in this subregion. More... | |
array3d< real64 > | getParticleRVectors () const override |
Get the list of particle r-vectors in this subregion. More... | |
void | setParticleRVectors (array3d< real64 > const particleRVectors) |
Set the list of particle r-vectors in this subregion. More... | |
bool | hasRVectors () const override |
Query whether this subregion has particles of a type that have r-vectors that depend on the deformation gradient. More... | |
localIndex | numParticles () const override |
Get the number of particles. More... | |
arrayView1d< globalIndex > | localToGlobalMap () |
Get local to global map, non-const version. More... | |
array1d< globalIndex > | localToGlobalMap () const override |
Get local to global map. More... | |
void | resize (dataRepository::indexType const numParticles) override final |
Resize the cell block to hold numParticles . More... | |
Public Member Functions inherited from geos::ParticleBlockABC | |
ParticleBlockABC (string const &name, Group *const parent) | |
Constructor. More... | |
template<typename LAMBDA > | |
void | forExternalProperties (LAMBDA &&lambda) |
Helper function to apply a lambda function over all the external properties of the subregion. More... | |
Public Member Functions inherited from geos::dataRepository::Group | |
template<typename LOG_LEVEL_INFO > | |
std::enable_if_t< geos::is_log_level_info< LOG_LEVEL_INFO >, void > | addLogLevel () |
Append a levelCondition and a log description to the description of the wrapped object given a log info struct. Must be called in constructor. More... | |
virtual bool | registerCallback (void *func, const std::type_info &funcType) |
Register a callback function on the group. More... | |
virtual void | reinit () |
Performs re-initialization of certain variable depending on the solver being used. | |
Group (string const &name, Group *const parent) | |
Constructor. More... | |
Group (string const &name, conduit::Node &rootNode) | |
Constructor. More... | |
Group (Group &&source)=default | |
Move constructor. More... | |
virtual | ~Group () |
Destructor, deletes all Groups and Wrappers owned by this Group. | |
Group ()=delete | |
Deleted default constructor. | |
Group (Group const &)=delete | |
Deleted copy constructor. | |
Group & | operator= (Group const &)=delete |
Deleted copy assignment operator. More... | |
Group & | operator= (Group &&)=delete |
Deleted move assignment operator. More... | |
void | printDataHierarchy (integer indent=0) const |
Prints the data hierarchy recursively. More... | |
string | dumpInputOptions () const |
string | dumpSubGroupsNames () const |
string | dumpWrappersNames () const |
template<typename T = Group> | |
T & | registerGroup (string const &name, std::unique_ptr< T > newObject) |
Register a new Group as a sub-group of current Group. More... | |
template<typename T = Group> | |
T & | registerGroup (string const &name, T *newObject) |
Register a new Group as a sub-group of current Group. More... | |
template<typename T = Group> | |
T & | registerGroup (string const &name) |
Register a new Group as a sub-group of current Group. More... | |
template<typename T = Group> | |
T & | registerGroup (subGroupMap::KeyIndex const &keyIndex) |
Register a new Group as a sub-group of current Group. More... | |
template<typename T = Group, typename TBASE = Group> | |
T & | registerGroup (string const &name, string const &catalogName) |
Register a new Group as a sub-group of current Group. More... | |
void | deregisterGroup (string const &name) |
Removes a child group from this group. More... | |
virtual Group * | createChild (string const &childKey, string const &childName) |
Creates a new sub-Group using the ObjectCatalog functionality. More... | |
template<typename T = Group, typename KEY = void> | |
T * | getGroupPointer (KEY const &key) |
Return a pointer to a sub-group of the current Group. More... | |
template<typename T = Group, typename KEY = void> | |
T const * | getGroupPointer (KEY const &key) const |
Return a pointer to a sub-group of the current Group. More... | |
template<typename T = Group, typename KEY = void> | |
T & | getGroup (KEY const &key) |
Return a reference to a sub-group of the current Group. More... | |
template<typename T = Group, typename KEY = void> | |
T const & | getGroup (KEY const &key) const |
Return a reference to a sub-group of the current Group. More... | |
template<typename T = Group> | |
T & | getGroupByPath (string const &path) |
Retrieve a group from the hierarchy using a path. More... | |
template<typename T = Group> | |
T const & | getGroupByPath (string const &path) const |
Retrieve a group from the hierarchy using a path. More... | |
subGroupMap & | getSubGroups () |
Get the subgroups object. More... | |
subGroupMap const & | getSubGroups () const |
Get the subgroups object. More... | |
localIndex | numSubGroups () const |
return the number of sub groups in this Group More... | |
std::vector< string > | getSubGroupsNames () const |
template<typename T = Group> | |
bool | hasGroup (string const &name) const |
Check whether a sub-group exists. More... | |
template<typename T > | |
bool | hasSubGroupOfType () const |
Check whether a sub-group exists by type. More... | |
template<typename GROUPTYPE = Group, typename ... GROUPTYPES, typename LAMBDA > | |
void | forSubGroups (LAMBDA &&lambda) |
Apply the given functor to subgroups that can be casted to one of specified types. More... | |
template<typename GROUPTYPE = Group, typename ... GROUPTYPES, typename LAMBDA > | |
void | forSubGroups (LAMBDA &&lambda) const |
Apply the given functor to subgroups that can be casted to one of specified types. More... | |
template<typename GROUPTYPE = Group, typename ... GROUPTYPES, typename LAMBDA > | |
void | forSubGroupsIndex (LAMBDA &&lambda) |
Apply the given functor to subgroups that can be casted to one of specified types. More... | |
template<typename GROUPTYPE = Group, typename ... GROUPTYPES, typename LAMBDA > | |
void | forSubGroupsIndex (LAMBDA &&lambda) const |
Apply the given functor to subgroups that can be casted to one of specified types. More... | |
template<typename GROUPTYPE = Group, typename ... GROUPTYPES, typename LOOKUP_CONTAINER , typename LAMBDA > | |
void | forSubGroups (LOOKUP_CONTAINER const &subGroupKeys, LAMBDA &&lambda) |
Apply the given functor to subgroups that can be casted to one of specified types. More... | |
template<typename GROUPTYPE = Group, typename ... GROUPTYPES, typename LOOKUP_CONTAINER , typename LAMBDA > | |
void | forSubGroups (LOOKUP_CONTAINER const &subGroupKeys, LAMBDA &&lambda) const |
Apply the given functor to subgroups that can be casted to one of specified types. More... | |
template<typename LAMBDA > | |
void | forWrappers (LAMBDA &&lambda) |
Apply the given functor to wrappers. More... | |
template<typename LAMBDA > | |
void | forWrappers (LAMBDA &&lambda) const |
Apply the given functor to wrappers. More... | |
template<typename TYPE , typename ... TYPES, typename LAMBDA > | |
void | forWrappers (LAMBDA &&lambda) |
Apply the given functor to wrappers that can be cast to one of specified types. More... | |
template<typename TYPE , typename ... TYPES, typename LAMBDA > | |
void | forWrappers (LAMBDA &&lambda) const |
Apply the given functor to wrappers that can be cast to one of specified types. More... | |
virtual void | initialize_postMeshGeneration () |
initialization post generation of the mesh. | |
void | initialize () |
Run initialization functions on this and all subgroups. More... | |
virtual void | initializationOrder (string_array &order) |
Sets the initialization order for sub-Groups. More... | |
void | initializePostInitialConditions () |
Initialization routine to be called after calling ApplyInitialConditions(). More... | |
void | postRestartInitializationRecursive () |
Initialization routine to be called after calling reading a restart file. More... | |
void | processInputFileRecursive (xmlWrapper::xmlDocument &xmlDocument, xmlWrapper::xmlNode &targetNode) |
Recursively read values using ProcessInputFile() from the input file and put them into the wrapped values for this group. Also add the includes content to the xmlDocument when Include nodes are encountered. More... | |
void | processInputFileRecursive (xmlWrapper::xmlDocument &xmlDocument, xmlWrapper::xmlNode &targetNode, xmlWrapper::xmlNodePos const &nodePos) |
Same as processInputFileRecursive(xmlWrapper::xmlDocument &, xmlWrapper::xmlNode &) but allow to reuse an existing xmlNodePos. More... | |
void | postInputInitializationRecursive () |
Recursively call postInputInitialization() to apply post processing after reading input values. | |
template<typename T , typename TBASE = T> | |
Wrapper< TBASE > & | registerWrapper (string const &name, wrapperMap::KeyIndex::index_type *const rkey=nullptr) |
Create and register a Wrapper around a new object. More... | |
template<typename T , typename TBASE = T> | |
Wrapper< TBASE > & | registerWrapper (Group::wrapperMap::KeyIndex const &viewKey) |
Create and register a Wrapper around a new object. More... | |
template<typename T > | |
Wrapper< T > & | registerWrapper (string const &name, std::unique_ptr< T > newObject) |
Register a Wrapper around a given object and take ownership. More... | |
template<typename T > | |
Wrapper< T > & | registerWrapper (string const &name, T *newObject) |
Register a Wrapper around an existing object, does not take ownership of the object. More... | |
WrapperBase & | registerWrapper (std::unique_ptr< WrapperBase > wrapper) |
Register and take ownership of an existing Wrapper. More... | |
void | deregisterWrapper (string const &name) |
Removes a Wrapper from this group. More... | |
void | generateDataStructureSkeleton (integer const level) |
Build a complete datastructure for schema generation. More... | |
virtual void | expandObjectCatalogs () |
Expand any catalogs in the data structure. | |
virtual void | setSchemaDeviations (xmlWrapper::xmlNode schemaRoot, xmlWrapper::xmlNode schemaParent, integer documentationType) |
Inform the schema generator of any deviations between the xml and GEOS data structures. More... | |
virtual void | registerDataOnMeshRecursive (Group &meshBodies) |
Calls RegisterDataOnMesh() recursively. More... | |
virtual void | registerDataOnMesh (Group &meshBodies) |
Register data on mesh entities. More... | |
virtual localIndex | packSize (string_array const &wrapperNames, integer const recursive, bool onDevice, parallelDeviceEvents &events) const |
Get the size required to pack a list of wrappers. More... | |
virtual localIndex | packSize (string_array const &wrapperNames, arrayView1d< localIndex const > const &packList, integer const recursive, bool onDevice, parallelDeviceEvents &events) const |
Get the size required to pack a list of indices within a list of wrappers. More... | |
localIndex | packSize (arrayView1d< localIndex const > const &packList, integer const recursive, bool onDevice, parallelDeviceEvents &events) const |
Get the size required to pack a list of indices for all registered wrappers. More... | |
virtual localIndex | pack (buffer_unit_type *&buffer, string_array const &wrapperNames, integer const recursive, bool onDevice, parallelDeviceEvents &events) const |
Pack a list of wrappers to a buffer. More... | |
virtual localIndex | pack (buffer_unit_type *&buffer, string_array const &wrapperNames, arrayView1d< localIndex const > const &packList, integer const recursive, bool onDevice, parallelDeviceEvents &events) const |
Pack a list of indices within a list of wrappers. More... | |
localIndex | pack (buffer_unit_type *&buffer, arrayView1d< localIndex const > const &packList, integer const recursive, bool onDevice, parallelDeviceEvents &events) const |
Pack a list of indices for all registered wrappers. More... | |
virtual localIndex | unpack (buffer_unit_type const *&buffer, arrayView1d< localIndex > &packList, integer const recursive, bool onDevice, parallelDeviceEvents &events, MPI_Op op=MPI_REPLACE) |
Unpack a buffer. More... | |
template<typename KEY > | |
WrapperBase const & | getWrapperBase (KEY const &key) const |
Return a reference to a WrapperBase stored in this group. More... | |
template<typename KEY > | |
WrapperBase & | getWrapperBase (KEY const &key) |
Return a reference to a WrapperBase stored in this group. More... | |
indexType | getWrapperIndex (string const &name) const |
wrapperMap const & | wrappers () const |
Get access to the internal wrapper storage. More... | |
wrapperMap & | wrappers () |
Get access to the internal wrapper storage. More... | |
indexType | numWrappers () const |
Return the number of wrappers. More... | |
std::vector< string > | getWrappersNames () const |
template<typename LOOKUP_TYPE > | |
bool | hasWrapper (LOOKUP_TYPE const &lookup) const |
Check if a wrapper exists. More... | |
template<typename T , typename LOOKUP_TYPE > | |
Wrapper< T > const & | getWrapper (LOOKUP_TYPE const &index) const |
Retrieve a Wrapper stored in this group. More... | |
template<typename T , typename LOOKUP_TYPE > | |
Wrapper< T > & | getWrapper (LOOKUP_TYPE const &index) |
Retrieve a Wrapper stored in this group. More... | |
template<typename T , typename LOOKUP_TYPE > | |
Wrapper< T > const * | getWrapperPointer (LOOKUP_TYPE const &index) const |
Retrieve a Wrapper stored in this group. More... | |
template<typename T , typename LOOKUP_TYPE > | |
Wrapper< T > * | getWrapperPointer (LOOKUP_TYPE const &index) |
Retrieve a Wrapper stored in this group. More... | |
template<typename T , typename LOOKUP_TYPE > | |
GEOS_DECLTYPE_AUTO_RETURN | getReference (LOOKUP_TYPE const &lookup) const |
Look up a wrapper and get reference to wrapped object. More... | |
template<typename T , typename LOOKUP_TYPE > | |
T & | getReference (LOOKUP_TYPE const &lookup) |
Look up a wrapper and get reference to wrapped object. More... | |
virtual void | reserve (indexType const newsize) |
Set the new capacity and reserve it in all wrappers that resize with parent. More... | |
localIndex | capacity () const |
Get the "capacity" of the group, which determines the capacity of resizable wrappers. More... | |
localIndex | size () const |
Get the "size" of the group, which determines the number of elements in resizable wrappers. More... | |
string const & | getName () const |
Get group name. More... | |
string | getPath () const |
Return the path of this Group in the data repository. Starts with '/' followed by the hierarchy of the children of the "Problem" in which the Group is. More... | |
DataContext const & | getDataContext () const |
template<typename KEY > | |
DataContext const & | getWrapperDataContext (KEY key) const |
Group & | getParent () |
Access the group's parent. More... | |
Group const & | getParent () const |
Access the group's parent. More... | |
bool | hasParent () const |
localIndex | getIndexInParent () const |
Get the group's index within its parent group. More... | |
localIndex | getSubGroupIndex (keyType const &key) const |
Get the index of a sub-Group within this group. More... | |
int | sizedFromParent () const |
Check whether this Group is resized when its parent is resized. More... | |
Group & | setSizedFromParent (int val) |
Set whether this wrapper is resized when its parent is resized. More... | |
RestartFlags | getRestartFlags () const |
Get flags that control restart output of this group. More... | |
void | setRestartFlags (RestartFlags flags) |
Set flags that control restart output of this group. More... | |
InputFlags | getInputFlags () const |
Get input flags for schema generation. More... | |
void | setInputFlags (InputFlags flags) |
Set input flags for schema generation. More... | |
conduit::Node & | getConduitNode () |
Return the Conduit node object associated with this group. More... | |
conduit::Node const & | getConduitNode () const |
Return the Conduit node object associated with this group. More... | |
void | prepareToWrite () |
Register the group and its wrappers with Conduit. | |
void | finishWriting () |
Write the group and its wrappers into Conduit. | |
void | loadFromConduit () |
Read the group and its wrappers from Conduit. | |
void | enableLogLevelInput () |
void | setLogLevel (integer const logLevel) |
Set verbosity level. More... | |
integer | getLogLevel () const |
Additional Inherited Members | |
Public Types inherited from geos::dataRepository::Group | |
using | subGroupMap = MappedVector< Group, Group *, keyType, indexType > |
The template specialization of MappedVector to use for the collection of sub-Group objects. | |
using | wrapperMap = MappedVector< WrapperBase, WrapperBase *, keyType, indexType > |
The template specialization of MappedVector to use for the collection wrappers objects. | |
using | CatalogInterface = dataRepository::CatalogInterface< Group, string const &, Group *const > |
Type alias for catalog interface used by this class. See CatalogInterface. | |
Static Public Member Functions inherited from geos::dataRepository::Group | |
template<typename T0 , typename T1 , typename ... CASTTYPES, typename CONTAINERTYPE , typename LAMBDA > | |
static bool | applyLambdaToContainer (CONTAINERTYPE &container, LAMBDA &&lambda) |
Apply a given functor to a container if the container can be cast to one of the specified types. More... | |
static CatalogInterface::CatalogType & | getCatalog () |
Get the singleton catalog for this Group. More... | |
Protected Member Functions inherited from geos::dataRepository::Group | |
virtual void | postInputInitialization () |
virtual void | initializePreSubGroups () |
Called by Initialize() prior to initializing sub-Groups. | |
virtual void | initializePostSubGroups () |
Called by Initialize() after to initializing sub-Groups. | |
virtual void | initializePostInitialConditionsPreSubGroups () |
Called by InitializePostInitialConditions() prior to initializing sub-Groups. | |
virtual void | initializePostInitialConditionsPostSubGroups () |
Called by InitializePostInitialConditions() after to initializing sub-Groups. | |
virtual void | postRestartInitialization () |
Performs initialization required after reading from a restart file. | |
This implementation of ParticleBlockABC mainly use the cell patterns/shapes to build all the particle to nodes, faces and edges mappings.
Definition at line 31 of file ParticleBlock.hpp.
Constructor for this class.
[in] | name | the name of this object manager |
[in] | parent | the parent Group |
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delete |
Copy constructor.
[in] | init | the source to copy |
Get the list of particle center locations in this subregion.
Implements geos::ParticleBlockABC.
Definition at line 94 of file ParticleBlock.hpp.
Get the list of particle damage values in this subregion.
Implements geos::ParticleBlockABC.
Definition at line 144 of file ParticleBlock.hpp.
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inlineoverridevirtual |
Get the list of particle group numbers (for contact) in this subregion.
Implements geos::ParticleBlockABC.
Definition at line 124 of file ParticleBlock.hpp.
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inlineoverridevirtual |
Get the list of particle global IDs in this subregion.
Implements geos::ParticleBlockABC.
Definition at line 84 of file ParticleBlock.hpp.
Get the list of particle material directions in this subregion.
Implements geos::ParticleBlockABC.
Definition at line 114 of file ParticleBlock.hpp.
Get the list of particle r-vectors in this subregion.
Implements geos::ParticleBlockABC.
Definition at line 174 of file ParticleBlock.hpp.
Get the list of particle strength scale values in this subregion.
Implements geos::ParticleBlockABC.
Definition at line 154 of file ParticleBlock.hpp.
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inlineoverridevirtual |
Get the list of particle surface flag values in this subregion.
Implements geos::ParticleBlockABC.
Definition at line 134 of file ParticleBlock.hpp.
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inlineoverridevirtual |
Get the type of particle in this subregion.
Implements geos::ParticleBlockABC.
Definition at line 81 of file ParticleBlock.hpp.
Get the list of particle velocities in this subregion.
Implements geos::ParticleBlockABC.
Definition at line 104 of file ParticleBlock.hpp.
Get the list of particle volumes in this subregion.
Implements geos::ParticleBlockABC.
Definition at line 164 of file ParticleBlock.hpp.
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inlineoverridevirtual |
Query whether this subregion has particles of a type that have r-vectors that depend on the deformation gradient.
Implements geos::ParticleBlockABC.
Definition at line 184 of file ParticleBlock.hpp.
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inline |
Get local to global map, non-const version.
Definition at line 197 of file ParticleBlock.hpp.
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inlineoverridevirtual |
Get local to global map.
Implements geos::ParticleBlockABC.
Definition at line 200 of file ParticleBlock.hpp.
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inlineoverridevirtual |
Get the number of particles.
Implements geos::ParticleBlockABC.
Definition at line 187 of file ParticleBlock.hpp.
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finaloverridevirtual |
Resize the cell block to hold numParticles
.
numParticles | The new number of particles. |
Reimplemented from geos::dataRepository::Group.
Set the list of particle center locations in this subregion.
particleCenter | The input list of particle center coordinates |
Definition at line 101 of file ParticleBlock.hpp.
Set the list of particle damage values in this subregion.
particleDamage | The input list of damage values |
Definition at line 151 of file ParticleBlock.hpp.
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inline |
Set the list of particle group numbers (for contact) in this subregion.
particleGroup | The input list of contact group numbers. |
Definition at line 131 of file ParticleBlock.hpp.
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inline |
Sets the global IDs of particles in this subregion.
particleID | The input list of global IDs |
Definition at line 91 of file ParticleBlock.hpp.
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inline |
Set the list of material directions in this subregion.
particleMaterialDirection | The input list of directions |
Definition at line 121 of file ParticleBlock.hpp.
Set the list of particle r-vectors in this subregion.
particleRVectors | The input list of r-vectors |
Definition at line 181 of file ParticleBlock.hpp.
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inline |
Set the list of particle strength scale values in this subregion.
particleStrengthScale | The input list of strength scale values |
Definition at line 161 of file ParticleBlock.hpp.
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inline |
Set the list of particle surface flags in this subregion.
particleSurfaceFlag | The input list of surface flags. |
Definition at line 141 of file ParticleBlock.hpp.
void geos::ParticleBlock::setParticleType | ( | ParticleType | particleType | ) |
Defines the underlying particle type (hex, tet...)
[in] | particleType | the particle type |
Set the list of particle velocities in this subregion.
particleVelocity | The input list of velocities |
Definition at line 111 of file ParticleBlock.hpp.
Set the list of particle volumes in this subregion.
particleVolume | The input list of volumes |
Definition at line 171 of file ParticleBlock.hpp.