GEOS
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The FaceManager class provides an interface to ObjectManagerBase in order to manage face data. More...
#include <FaceManager.hpp>
Classes | |
struct | viewKeyStruct |
Public Types | |
using | NodeMapType = InterObjectRelation< ArrayOfArrays< localIndex > > |
FaceToNode map type. | |
using | EdgeMapType = InterObjectRelation< ArrayOfArrays< localIndex > > |
FaceToEdge map type. | |
using | ElemMapType = FixedToManyElementRelation |
FaceToElement map type. | |
Public Types inherited from geos::ObjectManagerBase | |
using | CatalogInterface = dataRepository::CatalogInterface< ObjectManagerBase, string const &, dataRepository::Group *const > |
Nested type for the factory pattern, defining the base class (ObjectManagerBase) and the builder arguments (string const &, dataRepository::Group * const) of the derived products. | |
Public Types inherited from geos::dataRepository::Group | |
using | subGroupMap = MappedVector< Group, Group *, keyType, indexType > |
The template specialization of MappedVector to use for the collection of sub-Group objects. | |
using | wrapperMap = MappedVector< WrapperBase, WrapperBase *, keyType, indexType > |
The template specialization of MappedVector to use for the collection wrappers objects. | |
using | CatalogInterface = dataRepository::CatalogInterface< Group, string const &, Group *const > |
Type alias for catalog interface used by this class. See CatalogInterface. | |
Public Member Functions | |
virtual void | resize (localIndex const newsize) override |
Extend base class resize method resizing m_toNodesRelation, m_toEdgesRelation member containers. More... | |
void | setGeometricalRelations (CellBlockManagerABC const &cellBlockManager, ElementRegionManager const &elemRegionManager, NodeManager const &nodeManager, bool isBaseMeshLevel) |
Copies the nodes positions and the faces to (nodes|edges|elements) mappings from cellBlockManager . Computes the faces center, area and normal too. More... | |
void | setupRelatedObjectsInRelations (NodeManager const &nodeManager, EdgeManager const &edgeManager, ElementRegionManager const &elemRegionManager) |
Link the current manager to other managers. More... | |
void | computeGeometry (NodeManager const &nodeManager) |
Compute faces center, area and normal. More... | |
void | setDomainBoundaryObjects (ElementRegionManager const &elemRegionManager) |
Builds the face-on-domain-boundary indicator. More... | |
void | buildSets (NodeManager const &nodeManager) |
Build sets from the node sets. More... | |
void | sortAllFaceNodes (NodeManager const &nodeManager, ElementRegionManager const &elemManager) |
Sort all faces nodes counterclockwisely in m_toNodesRelation. More... | |
void | setIsExternal () |
Flag faces on boundary or external to the DomainPartition. | |
void | compressRelationMaps () |
Compress FaceManager face-to-node and face-to-edge containers so that the values of each array are contiguous with no extra capacity in between. More... | |
virtual void | enforceStateFieldConsistencyPostTopologyChange (std::set< localIndex > const &targetIndices) override |
Enforce child faces and parent faces to have opposite normals. More... | |
void | depopulateUpMaps (std::set< localIndex > const &receivedFaces, ElementRegionManager const &elemRegionManager) |
Clean up the mappings from faces to element index, region, subregion on a new (updated) list of faces, in order to keep only relevant mappings. More... | |
virtual ArrayOfSets< globalIndex > | extractMapFromObjectForAssignGlobalIndexNumbers (ObjectManagerBase const &nodeManager) override |
Extract a face-to-nodes map with global indexed for boundary faces. More... | |
Constructors/destructor | |
FaceManager (string const &name, Group *const parent) | |
Main Constructor for FaceManager. More... | |
Packing methods | |
virtual localIndex | packUpDownMapsSize (arrayView1d< localIndex const > const &packList) const override |
Calculate the size that a list would have if it were packed, but without actually packing it. More... | |
virtual localIndex | packUpDownMaps (buffer_unit_type *&buffer, arrayView1d< localIndex const > const &packList) const override |
Pack an array of node indices into a buffer. More... | |
virtual localIndex | unpackUpDownMaps (buffer_unit_type const *&buffer, localIndex_array &packList, bool const overwriteUpMaps, bool const overwriteDownMaps) override |
Unpack a buffer to an array of node indices. More... | |
void | fixUpDownMaps (bool const clearIfUnmapped) |
Call fixUpDownMaps for nodes-to-edges and nodes-to-faces maps. More... | |
Public Member Functions inherited from geos::ObjectManagerBase | |
ObjectManagerBase (string const &name, dataRepository::Group *const parent) | |
Constructor. More... | |
~ObjectManagerBase () override | |
Destructor. | |
virtual localIndex | packSize (string_array const &wrapperNames, arrayView1d< localIndex const > const &packList, integer const recursive, bool onDevice, parallelDeviceEvents &events) const override |
Get the size required to pack a list of indices within a list of wrappers. More... | |
virtual localIndex | pack (buffer_unit_type *&buffer, string_array const &wrapperNames, arrayView1d< localIndex const > const &packList, integer const recursive, bool onDevice, parallelDeviceEvents &events) const override |
Pack a list of indices within a list of wrappers. More... | |
virtual localIndex | unpack (buffer_unit_type const *&buffer, arrayView1d< localIndex > &packList, integer const recursive, bool onDevice, parallelDeviceEvents &events, MPI_Op op=MPI_REPLACE) override |
Unpack a buffer. More... | |
template<bool DO_PACKING> | |
localIndex | packSets (buffer_unit_type *&buffer, arrayView1d< localIndex const > const &packList) const |
Packs the elements of each set that actually are in packList . More... | |
localIndex | unpackSets (buffer_unit_type const *&buffer) |
Unpack the content of buffer into the sets of the instance. More... | |
void | excludeWrappersFromPacking (std::set< string > const &wrapperNames) |
Registers wrappers that will be excluded from packing. More... | |
virtual localIndex | packGlobalMapsSize (arrayView1d< localIndex const > const &packList, integer const recursive) const |
Computes the pack size of the global maps elements in the @ packList. More... | |
virtual localIndex | packGlobalMaps (buffer_unit_type *&buffer, arrayView1d< localIndex const > const &packList, integer const recursive) const |
Packs the global maps elements in the @ packList. More... | |
void | setReceiveLists () |
Clear and redefines the ghosts to receive. | |
virtual localIndex | unpackUpDownMaps (buffer_unit_type const *&buffer, array1d< localIndex > &packList, bool const overwriteUpMaps, bool const overwriteDownMaps) |
Unpacks the specific elements in the @ packList. More... | |
virtual localIndex | unpackGlobalMaps (buffer_unit_type const *&buffer, localIndex_array &packList, integer const recursive) |
Unpacks the global maps from buffer . More... | |
localIndex | packParentChildMapsSize (arrayView1d< localIndex const > const &packList) const |
Computes the pack size of the parent/child relations in packList . More... | |
localIndex | packParentChildMaps (buffer_unit_type *&buffer, arrayView1d< localIndex const > const &packList) const |
Packs the parent/child relations in packList . More... | |
localIndex | unpackParentChildMaps (buffer_unit_type const *&buffer, localIndex_array &packList) |
Unacks the parent/child relations in packList . More... | |
void | moveSets (LvArray::MemorySpace const targetSpace) |
Manually move all sets to a memory space. More... | |
localIndex | resize (localIndex const newSize, const bool) |
Resize the group and all contained wrappers that resize with parent. More... | |
SortedArray< localIndex > & | createSet (const string &newSetName) |
Creates a new set. More... | |
void | constructSetFromSetAndMap (SortedArrayView< localIndex const > const &inputSet, const array2d< localIndex > &map, const string &setName) |
Builds a new set on this instance given another objects set and the map between them. More... | |
void | constructSetFromSetAndMap (SortedArrayView< localIndex const > const &inputSet, const array1d< localIndex_array > &map, const string &setName) |
Builds a new set on this instance given another objects set and the map between them. More... | |
void | constructSetFromSetAndMap (SortedArrayView< localIndex const > const &inputSet, ArrayOfArraysView< localIndex const > const &map, const string &setName) |
Builds a new set on this instance given another objects set and the map between them. More... | |
void | constructGlobalToLocalMap () |
Constructs the global to local map. | |
array1d< globalIndex > | constructGlobalListOfBoundaryObjects () const |
Computes the (global) index list that are domain boundaries. More... | |
void | setGhostRankForSenders (int const neighborRank) |
Defines neighborRank ownership for ghost objects. More... | |
localIndex | getNumberOfGhosts () const |
Get the number of ghost objects. More... | |
localIndex | getNumberOfLocalIndices () const |
Get the number of locally owned objects. More... | |
integer | splitObject (localIndex const indexToSplit, int const rank, localIndex &newIndex) |
Split object to deal with topology changes. More... | |
void | inheritGhostRankFromParent (std::set< localIndex > const &indices) |
sets the value of m_ghostRank to the value of the objects parent. More... | |
void | copyObject (localIndex const source, localIndex const destination) |
Copy object from source to @ destination. More... | |
void | eraseObject (std::set< localIndex > const &indicesToErase) |
Erase object from this object manager. More... | |
virtual void | setMaxGlobalIndex () |
Computes the maximum global index allong all the MPI ranks. | |
template<typename FIELD_TRAIT > | |
dataRepository::Wrapper< typename FIELD_TRAIT::type > & | registerField (string const &nameOfRegisteringObject) |
Register field with this ObjectManagerBase using a dataRepository::Wrapper . More... | |
template<typename FIELD_TRAIT > | |
dataRepository::Wrapper< typename FIELD_TRAIT::type > & | registerField (FIELD_TRAIT const &fieldTrait, typename FIELD_TRAIT::type *newObject) |
Helper function to register fields. More... | |
template<typename FIELD_TRAIT0 , typename FIELD_TRAIT1 , typename ... FIELD_TRAITS> | |
void | registerField (string const &nameOfRegisteringObject) |
Register a collection of fields with this ObjectManagerBase using a dataRepository::Wrapper. More... | |
template<typename FIELD_TRAIT > | |
GEOS_DECLTYPE_AUTO_RETURN | getField () const |
Get a view to the field associated with a trait from this ObjectManagerBase . More... | |
template<typename FIELD_TRAIT > | |
GEOS_DECLTYPE_AUTO_RETURN | getField () |
Get the field associated with a trait from this ObjectManagerBase . More... | |
template<typename FIELD_TRAIT > | |
bool | hasField () const |
Checks if a field has been registered. More... | |
virtual viewKeyStruct & | viewKeys () |
Get the view keys for Group access. More... | |
virtual viewKeyStruct const & | viewKeys () const |
Get the view keys for Group access, const version. More... | |
virtual groupKeyStruct & | groupKeys () |
Get the group keys for Group access. More... | |
virtual groupKeyStruct const & | groupKeys () const |
Get the group keys for Group access, const version. More... | |
Group & | sets () |
Get the group holding the object sets. More... | |
Group const & | sets () const |
Get the group holding the object sets, const version. More... | |
SortedArray< localIndex > & | getSet (string const &setName) |
Get a set by name. More... | |
SortedArrayView< localIndex const > | getSet (string const &setName) const |
Get a set by name, const version. More... | |
SortedArray< localIndex > & | externalSet () |
Get the external set. More... | |
SortedArrayView< localIndex const > | externalSet () const |
Get the external set, const version. More... | |
void | updateGlobalToLocalMap (localIndex const lid) |
Updates (if needed) the global index for local index lid . More... | |
arrayView1d< globalIndex > | localToGlobalMap () |
Get local to global map. More... | |
arrayView1d< globalIndex const > | localToGlobalMap () const |
Get local to global map, const version. More... | |
unordered_map< globalIndex, localIndex > const & | globalToLocalMap () const |
Get global to local map. More... | |
localIndex | globalToLocalMap (globalIndex const gid) const |
Retrieves the local index for given global index. More... | |
array1d< integer > const & | isExternal () |
Get the locality information of the objects. More... | |
arrayView1d< integer const > | isExternal () const |
Get the locality information of the objects. More... | |
array1d< integer > const & | ghostRank () |
Get the ghost information of each object. More... | |
arrayView1d< integer const > | ghostRank () const |
Get the ghost information of each object, const version. More... | |
NeighborData & | getNeighborData (int const rank) |
Get neighbor data for given rank . More... | |
NeighborData const & | getNeighborData (int const rank) const |
Get neighbor data for given rank , const version. More... | |
void | addNeighbor (int const rank) |
Add a neighbor for rank . More... | |
void | removeNeighbor (int const rank) |
Remove neighbor for rank . More... | |
globalIndex | localMaxGlobalIndex () const |
Get the local maximum global index on this rank. More... | |
globalIndex | maxGlobalIndex () const |
Get the maximum global index of all objects across all rank. See. More... | |
array1d< integer > & | getDomainBoundaryIndicator () |
Get the domain boundary indicator. More... | |
arrayView1d< integer const > | getDomainBoundaryIndicator () const |
Get the domain boundary indicator. More... | |
Public Member Functions inherited from geos::dataRepository::Group | |
template<typename LOG_LEVEL_INFO > | |
std::enable_if_t< geos::is_log_level_info< LOG_LEVEL_INFO >, void > | addLogLevel () |
Append a levelCondition and a log description to the description of the wrapped object given a log info struct. Must be called in constructor. More... | |
virtual bool | registerCallback (void *func, const std::type_info &funcType) |
Register a callback function on the group. More... | |
virtual void | reinit () |
Performs re-initialization of certain variable depending on the solver being used. | |
Group (string const &name, Group *const parent) | |
Constructor. More... | |
Group (string const &name, conduit::Node &rootNode) | |
Constructor. More... | |
Group (Group &&source)=default | |
Move constructor. More... | |
virtual | ~Group () |
Destructor, deletes all Groups and Wrappers owned by this Group. | |
Group ()=delete | |
Deleted default constructor. | |
Group (Group const &)=delete | |
Deleted copy constructor. | |
Group & | operator= (Group const &)=delete |
Deleted copy assignment operator. More... | |
Group & | operator= (Group &&)=delete |
Deleted move assignment operator. More... | |
void | printDataHierarchy (integer indent=0) const |
Prints the data hierarchy recursively. More... | |
string | dumpInputOptions () const |
string | dumpSubGroupsNames () const |
string | dumpWrappersNames () const |
template<typename T = Group> | |
T & | registerGroup (string const &name, std::unique_ptr< T > newObject) |
Register a new Group as a sub-group of current Group. More... | |
template<typename T = Group> | |
T & | registerGroup (string const &name, T *newObject) |
Register a new Group as a sub-group of current Group. More... | |
template<typename T = Group> | |
T & | registerGroup (string const &name) |
Register a new Group as a sub-group of current Group. More... | |
template<typename T = Group> | |
T & | registerGroup (subGroupMap::KeyIndex const &keyIndex) |
Register a new Group as a sub-group of current Group. More... | |
template<typename T = Group, typename TBASE = Group> | |
T & | registerGroup (string const &name, string const &catalogName) |
Register a new Group as a sub-group of current Group. More... | |
void | deregisterGroup (string const &name) |
Removes a child group from this group. More... | |
virtual Group * | createChild (string const &childKey, string const &childName) |
Creates a new sub-Group using the ObjectCatalog functionality. More... | |
template<typename T = Group, typename KEY = void> | |
T * | getGroupPointer (KEY const &key) |
Return a pointer to a sub-group of the current Group. More... | |
template<typename T = Group, typename KEY = void> | |
T const * | getGroupPointer (KEY const &key) const |
Return a pointer to a sub-group of the current Group. More... | |
template<typename T = Group, typename KEY = void> | |
T & | getGroup (KEY const &key) |
Return a reference to a sub-group of the current Group. More... | |
template<typename T = Group, typename KEY = void> | |
T const & | getGroup (KEY const &key) const |
Return a reference to a sub-group of the current Group. More... | |
template<typename T = Group> | |
T & | getGroupByPath (string const &path) |
Retrieve a group from the hierarchy using a path. More... | |
template<typename T = Group> | |
T const & | getGroupByPath (string const &path) const |
Retrieve a group from the hierarchy using a path. More... | |
subGroupMap & | getSubGroups () |
Get the subgroups object. More... | |
subGroupMap const & | getSubGroups () const |
Get the subgroups object. More... | |
localIndex | numSubGroups () const |
return the number of sub groups in this Group More... | |
std::vector< string > | getSubGroupsNames () const |
template<typename T = Group> | |
bool | hasGroup (string const &name) const |
Check whether a sub-group exists. More... | |
template<typename T > | |
bool | hasSubGroupOfType () const |
Check whether a sub-group exists by type. More... | |
template<typename GROUPTYPE = Group, typename ... GROUPTYPES, typename LAMBDA > | |
void | forSubGroups (LAMBDA &&lambda) |
Apply the given functor to subgroups that can be casted to one of specified types. More... | |
template<typename GROUPTYPE = Group, typename ... GROUPTYPES, typename LAMBDA > | |
void | forSubGroups (LAMBDA &&lambda) const |
Apply the given functor to subgroups that can be casted to one of specified types. More... | |
template<typename GROUPTYPE = Group, typename ... GROUPTYPES, typename LAMBDA > | |
void | forSubGroupsIndex (LAMBDA &&lambda) |
Apply the given functor to subgroups that can be casted to one of specified types. More... | |
template<typename GROUPTYPE = Group, typename ... GROUPTYPES, typename LAMBDA > | |
void | forSubGroupsIndex (LAMBDA &&lambda) const |
Apply the given functor to subgroups that can be casted to one of specified types. More... | |
template<typename GROUPTYPE = Group, typename ... GROUPTYPES, typename LOOKUP_CONTAINER , typename LAMBDA > | |
void | forSubGroups (LOOKUP_CONTAINER const &subGroupKeys, LAMBDA &&lambda) |
Apply the given functor to subgroups that can be casted to one of specified types. More... | |
template<typename GROUPTYPE = Group, typename ... GROUPTYPES, typename LOOKUP_CONTAINER , typename LAMBDA > | |
void | forSubGroups (LOOKUP_CONTAINER const &subGroupKeys, LAMBDA &&lambda) const |
Apply the given functor to subgroups that can be casted to one of specified types. More... | |
template<typename LAMBDA > | |
void | forWrappers (LAMBDA &&lambda) |
Apply the given functor to wrappers. More... | |
template<typename LAMBDA > | |
void | forWrappers (LAMBDA &&lambda) const |
Apply the given functor to wrappers. More... | |
template<typename TYPE , typename ... TYPES, typename LAMBDA > | |
void | forWrappers (LAMBDA &&lambda) |
Apply the given functor to wrappers that can be cast to one of specified types. More... | |
template<typename TYPE , typename ... TYPES, typename LAMBDA > | |
void | forWrappers (LAMBDA &&lambda) const |
Apply the given functor to wrappers that can be cast to one of specified types. More... | |
virtual void | initialize_postMeshGeneration () |
initialization post generation of the mesh. | |
void | initialize () |
Run initialization functions on this and all subgroups. More... | |
virtual void | initializationOrder (string_array &order) |
Sets the initialization order for sub-Groups. More... | |
void | initializePostInitialConditions () |
Initialization routine to be called after calling ApplyInitialConditions(). More... | |
void | postRestartInitializationRecursive () |
Initialization routine to be called after calling reading a restart file. More... | |
void | processInputFileRecursive (xmlWrapper::xmlDocument &xmlDocument, xmlWrapper::xmlNode &targetNode) |
Recursively read values using ProcessInputFile() from the input file and put them into the wrapped values for this group. Also add the includes content to the xmlDocument when Include nodes are encountered. More... | |
void | processInputFileRecursive (xmlWrapper::xmlDocument &xmlDocument, xmlWrapper::xmlNode &targetNode, xmlWrapper::xmlNodePos const &nodePos) |
Same as processInputFileRecursive(xmlWrapper::xmlDocument &, xmlWrapper::xmlNode &) but allow to reuse an existing xmlNodePos. More... | |
void | postInputInitializationRecursive () |
Recursively call postInputInitialization() to apply post processing after reading input values. | |
template<typename T , typename TBASE = T> | |
Wrapper< TBASE > & | registerWrapper (string const &name, wrapperMap::KeyIndex::index_type *const rkey=nullptr) |
Create and register a Wrapper around a new object. More... | |
template<typename T , typename TBASE = T> | |
Wrapper< TBASE > & | registerWrapper (Group::wrapperMap::KeyIndex const &viewKey) |
Create and register a Wrapper around a new object. More... | |
template<typename T > | |
Wrapper< T > & | registerWrapper (string const &name, std::unique_ptr< T > newObject) |
Register a Wrapper around a given object and take ownership. More... | |
template<typename T > | |
Wrapper< T > & | registerWrapper (string const &name, T *newObject) |
Register a Wrapper around an existing object, does not take ownership of the object. More... | |
WrapperBase & | registerWrapper (std::unique_ptr< WrapperBase > wrapper) |
Register and take ownership of an existing Wrapper. More... | |
void | deregisterWrapper (string const &name) |
Removes a Wrapper from this group. More... | |
void | generateDataStructureSkeleton (integer const level) |
Build a complete datastructure for schema generation. More... | |
virtual void | expandObjectCatalogs () |
Expand any catalogs in the data structure. | |
virtual void | setSchemaDeviations (xmlWrapper::xmlNode schemaRoot, xmlWrapper::xmlNode schemaParent, integer documentationType) |
Inform the schema generator of any deviations between the xml and GEOS data structures. More... | |
virtual void | registerDataOnMeshRecursive (Group &meshBodies) |
Calls RegisterDataOnMesh() recursively. More... | |
virtual void | registerDataOnMesh (Group &meshBodies) |
Register data on mesh entities. More... | |
virtual localIndex | packSize (string_array const &wrapperNames, integer const recursive, bool onDevice, parallelDeviceEvents &events) const |
Get the size required to pack a list of wrappers. More... | |
localIndex | packSize (arrayView1d< localIndex const > const &packList, integer const recursive, bool onDevice, parallelDeviceEvents &events) const |
Get the size required to pack a list of indices for all registered wrappers. More... | |
virtual localIndex | pack (buffer_unit_type *&buffer, string_array const &wrapperNames, integer const recursive, bool onDevice, parallelDeviceEvents &events) const |
Pack a list of wrappers to a buffer. More... | |
localIndex | pack (buffer_unit_type *&buffer, arrayView1d< localIndex const > const &packList, integer const recursive, bool onDevice, parallelDeviceEvents &events) const |
Pack a list of indices for all registered wrappers. More... | |
template<typename KEY > | |
WrapperBase const & | getWrapperBase (KEY const &key) const |
Return a reference to a WrapperBase stored in this group. More... | |
template<typename KEY > | |
WrapperBase & | getWrapperBase (KEY const &key) |
Return a reference to a WrapperBase stored in this group. More... | |
indexType | getWrapperIndex (string const &name) const |
wrapperMap const & | wrappers () const |
Get access to the internal wrapper storage. More... | |
wrapperMap & | wrappers () |
Get access to the internal wrapper storage. More... | |
indexType | numWrappers () const |
Return the number of wrappers. More... | |
std::vector< string > | getWrappersNames () const |
template<typename LOOKUP_TYPE > | |
bool | hasWrapper (LOOKUP_TYPE const &lookup) const |
Check if a wrapper exists. More... | |
template<typename T , typename LOOKUP_TYPE > | |
Wrapper< T > const & | getWrapper (LOOKUP_TYPE const &index) const |
Retrieve a Wrapper stored in this group. More... | |
template<typename T , typename LOOKUP_TYPE > | |
Wrapper< T > & | getWrapper (LOOKUP_TYPE const &index) |
Retrieve a Wrapper stored in this group. More... | |
template<typename T , typename LOOKUP_TYPE > | |
Wrapper< T > const * | getWrapperPointer (LOOKUP_TYPE const &index) const |
Retrieve a Wrapper stored in this group. More... | |
template<typename T , typename LOOKUP_TYPE > | |
Wrapper< T > * | getWrapperPointer (LOOKUP_TYPE const &index) |
Retrieve a Wrapper stored in this group. More... | |
template<typename T , typename LOOKUP_TYPE > | |
GEOS_DECLTYPE_AUTO_RETURN | getReference (LOOKUP_TYPE const &lookup) const |
Look up a wrapper and get reference to wrapped object. More... | |
template<typename T , typename LOOKUP_TYPE > | |
T & | getReference (LOOKUP_TYPE const &lookup) |
Look up a wrapper and get reference to wrapped object. More... | |
virtual void | reserve (indexType const newsize) |
Set the new capacity and reserve it in all wrappers that resize with parent. More... | |
localIndex | capacity () const |
Get the "capacity" of the group, which determines the capacity of resizable wrappers. More... | |
localIndex | size () const |
Get the "size" of the group, which determines the number of elements in resizable wrappers. More... | |
string const & | getName () const |
Get group name. More... | |
string | getPath () const |
Return the path of this Group in the data repository. Starts with '/' followed by the hierarchy of the children of the "Problem" in which the Group is. More... | |
DataContext const & | getDataContext () const |
template<typename KEY > | |
DataContext const & | getWrapperDataContext (KEY key) const |
Group & | getParent () |
Access the group's parent. More... | |
Group const & | getParent () const |
Access the group's parent. More... | |
bool | hasParent () const |
localIndex | getIndexInParent () const |
Get the group's index within its parent group. More... | |
localIndex | getSubGroupIndex (keyType const &key) const |
Get the index of a sub-Group within this group. More... | |
int | sizedFromParent () const |
Check whether this Group is resized when its parent is resized. More... | |
Group & | setSizedFromParent (int val) |
Set whether this wrapper is resized when its parent is resized. More... | |
RestartFlags | getRestartFlags () const |
Get flags that control restart output of this group. More... | |
void | setRestartFlags (RestartFlags flags) |
Set flags that control restart output of this group. More... | |
InputFlags | getInputFlags () const |
Get input flags for schema generation. More... | |
void | setInputFlags (InputFlags flags) |
Set input flags for schema generation. More... | |
conduit::Node & | getConduitNode () |
Return the Conduit node object associated with this group. More... | |
conduit::Node const & | getConduitNode () const |
Return the Conduit node object associated with this group. More... | |
void | prepareToWrite () |
Register the group and its wrappers with Conduit. | |
void | finishWriting () |
Write the group and its wrappers into Conduit. | |
void | loadFromConduit () |
Read the group and its wrappers from Conduit. | |
void | enableLogLevelInput () |
void | setLogLevel (integer const logLevel) |
Set verbosity level. More... | |
integer | getLogLevel () const |
Static Public Member Functions | |
static constexpr localIndex | nodeMapOverallocation () |
Get the default number of node per face in node list. More... | |
static constexpr localIndex | edgeMapOverallocation () |
Get the default number of edge per face in edge list. More... | |
static void | sortFaceNodes (arrayView2d< real64 const, nodes::REFERENCE_POSITION_USD > const &X, arraySlice1d< real64 const > const elementCenter, Span< localIndex > const faceNodes) |
Reorder face nodes to be labeled counter-clockwise resulting in outgoing normal. More... | |
Static Public Member Functions inherited from geos::ObjectManagerBase | |
template<typename TYPE_RELATION > | |
static void | fixUpDownMaps (TYPE_RELATION &relation, map< localIndex, array1d< globalIndex > > &unmappedIndices, bool const clearIfUnmapped) |
Fixing the up/down maps by mapping the unmapped indices. More... | |
template<typename TYPE_RELATION > | |
static void | fixUpDownMaps (TYPE_RELATION &relation, map< localIndex, SortedArray< globalIndex > > &unmappedIndices, bool const clearIfUnmapped) |
Fixing the up/down maps by mapping the unmapped indices. More... | |
static void | fixUpDownMaps (ArrayOfSets< localIndex > &relation, unordered_map< globalIndex, localIndex > const &globalToLocal, map< localIndex, SortedArray< globalIndex > > &unmappedIndices, bool const clearIfUnmapped) |
Fixing the up/down maps by mapping the unmapped indices. More... | |
static void | cleanUpMap (std::set< localIndex > const &targetIndices, array1d< SortedArray< localIndex > > &upmap, arrayView2d< localIndex const > const &downmap) |
Removes from the list of arrays of upmap all the elements for which the "mirror target array" of downmap does not contain the proper target index. More... | |
static void | cleanUpMap (std::set< localIndex > const &targetIndices, ArrayOfSetsView< localIndex > const &upmap, arrayView2d< localIndex const > const &downmap) |
Removes from the list of sets of upmap all the elements for which the "mirror target array" of downmap does not contain the proper target index. More... | |
static void | cleanUpMap (std::set< localIndex > const &targetIndices, array1d< SortedArray< localIndex > > &upmap, arrayView1d< arrayView1d< localIndex const > const > const &downmap) |
Removes from the list of arrays of upmap all the elements for which the "mirror target array" of downmap does not contain the proper target index. More... | |
static void | cleanUpMap (std::set< localIndex > const &targetIndices, ArrayOfSetsView< localIndex > const &upmap, arrayView1d< arrayView1d< localIndex const > const > const &downmap) |
Removes from the list of sets of upmap all the elements for which the "mirror target array" of downmap does not contain the proper target index. More... | |
static void | cleanUpMap (std::set< localIndex > const &targetIndices, ArrayOfSetsView< localIndex > const &upmap, ArrayOfArraysView< localIndex const > const &downmap) |
Removes from the list of sets of upmap all the elements for which the "mirror target array" of downmap does not contain the proper target index. More... | |
static localIndex | getParentRecursive (arraySlice1d< localIndex const > const &parentIndices, localIndex const lookup) |
Get the upmost parent. More... | |
static CatalogInterface::CatalogType & | getCatalog () |
Acessing the unique instance of this catalog. More... | |
Static Public Member Functions inherited from geos::dataRepository::Group | |
template<typename T0 , typename T1 , typename ... CASTTYPES, typename CONTAINERTYPE , typename LAMBDA > | |
static bool | applyLambdaToContainer (CONTAINERTYPE &container, LAMBDA &&lambda) |
Apply a given functor to a container if the container can be cast to one of the specified types. More... | |
static CatalogInterface::CatalogType & | getCatalog () |
Get the singleton catalog for this Group. More... | |
Public Attributes | |
viewKeyStruct/groupKeyStruct | |
geos::FaceManager::viewKeyStruct | viewKeys |
viewKeys | |
Public Attributes inherited from geos::ObjectManagerBase | |
struct geos::ObjectManagerBase::viewKeyStruct | m_ObjectManagerBaseViewKeys |
viewKey struct for the ObjectManagerBase class | |
struct geos::ObjectManagerBase::groupKeyStruct | m_ObjectManagerBaseGroupKeys |
groupKey struct for the ObjectManagerBase class | |
Accessors for FaceManager fixed data | |
constexpr static int | maxFaceNodes () |
}@ More... | |
array1d< real64 > & | faceArea () |
Get a mutable accessor to an array containing all the face area. More... | |
arrayView1d< real64 const > | faceArea () const |
Get an immutable accessor to an array containing all the face area. More... | |
array2d< real64 > & | faceCenter () |
Get a mutable accessor to an array containing all the face center. More... | |
arrayView2d< real64 const > | faceCenter () const |
Get an immutable accessor to an array containing all the face centers. More... | |
array2d< real64 > & | faceNormal () |
Get a mutable accessor to an array containing all the face normals. More... | |
arrayView2d< real64 const > | faceNormal () const |
Get an immutable accessor to an array containing all the face normals. More... | |
NodeMapType & | nodeList () |
Get a mutable accessor to a map containing the list of each nodes for each faces. More... | |
NodeMapType const & | nodeList () const |
Get an immutable accessor to a map containing the list of each nodes for each faces. More... | |
EdgeMapType & | edgeList () |
Get a mutable accessor to a map containing the list of each edges for each faces. More... | |
EdgeMapType const & | edgeList () const |
Get an immutable accessor to a map containing the list of each edges for each faces. More... | |
array2d< localIndex > & | elementRegionList () |
Get a mutable accessor to the faces-to-ElementRegion relation. More... | |
arrayView2d< localIndex const > | elementRegionList () const |
Get an immutable accessor to the faces-to-ElementRegion relation. More... | |
array2d< localIndex > & | elementSubRegionList () |
Get a mutable accessor to the faces-to-ElementSubRegion relation. More... | |
arrayView2d< localIndex const > | elementSubRegionList () const |
Get an immutable accessor to the faces-to-ElementSubRegion relation. More... | |
array2d< localIndex > & | elementList () |
Get a mutable accessor to the faces-to-element-index relation. More... | |
arrayView2d< localIndex const > | elementList () const |
Get an imutable accessor to the faces-to-element-index relation. More... | |
ElemMapType & | toElementRelation () |
Get a mutable accessor to the faces-to-element-index relation. More... | |
ElemMapType const & | toElementRelation () const |
Get an immutable accessor to the faces-to-element-index relation. More... | |
Static Factory Catalog Functions | |
static string | catalogName () |
Return the name of the FaceManager in the object catalog. More... | |
virtual string | getCatalogName () const override |
Provide a virtual access to catalogName(). More... | |
Additional Inherited Members | |
Protected Member Functions inherited from geos::dataRepository::Group | |
virtual void | postInputInitialization () |
virtual void | initializePreSubGroups () |
Called by Initialize() prior to initializing sub-Groups. | |
virtual void | initializePostSubGroups () |
Called by Initialize() after to initializing sub-Groups. | |
virtual void | initializePostInitialConditionsPreSubGroups () |
Called by InitializePostInitialConditions() prior to initializing sub-Groups. | |
virtual void | initializePostInitialConditionsPostSubGroups () |
Called by InitializePostInitialConditions() after to initializing sub-Groups. | |
virtual void | postRestartInitialization () |
Performs initialization required after reading from a restart file. | |
Protected Attributes inherited from geos::ObjectManagerBase | |
Group | m_sets |
Group that holds object sets. | |
std::set< string > | m_packingExclusionList |
Names of the wrappers that should not be packed. | |
Group | m_neighborGroup |
Group that holds all the NeighborData objects. | |
array1d< globalIndex > | m_localToGlobalMap |
Contains the global index of each object. | |
unordered_map< globalIndex, localIndex > | m_globalToLocalMap |
Map from object global index to the local index. | |
array1d< integer > | m_isExternal |
Array that holds if an object is external. | |
array1d< integer > | m_domainBoundaryIndicator |
Domain boundary indicator: 1 means the "index" is on the boundary. | |
array1d< integer > | m_ghostRank |
Array that holds the ghost information about each object. More... | |
unordered_map< int, NeighborData > | m_neighborData |
A map from rank to the associated NeighborData object. | |
real64 | m_overAllocationFactor = 1.1 |
Factor by which to overallocate when adding objects. | |
globalIndex | m_maxGlobalIndex = -1 |
The maximum global index of all objects across all rank. | |
globalIndex | m_localMaxGlobalIndex = -1 |
The maximum global index of any object of all objects on this rank. | |
The FaceManager class provides an interface to ObjectManagerBase in order to manage face data.
The FaceManager class manages the face data using face indexed or keyed containers. This means that each field is stored in a way where each container entry corresponds to a face.
Definition at line 43 of file FaceManager.hpp.
Main Constructor for FaceManager.
[in] | name | the name of FaceManager |
[in] | parent | the parent Group object of FaceManager |
void geos::FaceManager::buildSets | ( | NodeManager const & | nodeManager | ) |
Build sets from the node sets.
[in] | nodeManager | The node manager that will provide the node sets. |
|
inlinestatic |
Return the name of the FaceManager in the object catalog.
Definition at line 65 of file FaceManager.hpp.
void geos::FaceManager::compressRelationMaps | ( | ) |
Compress FaceManager face-to-node and face-to-edge containers so that the values of each array are contiguous with no extra capacity in between.
void geos::FaceManager::computeGeometry | ( | NodeManager const & | nodeManager | ) |
Compute faces center, area and normal.
[in] | nodeManager | NodeManager associated with the current DomainPartition |
void geos::FaceManager::depopulateUpMaps | ( | std::set< localIndex > const & | receivedFaces, |
ElementRegionManager const & | elemRegionManager | ||
) |
Clean up the mappings from faces to element index, region, subregion on a new (updated) list of faces, in order to keep only relevant mappings.
[in] | receivedFaces | the new list of target node indices |
[in] | elemRegionManager | Element Region Manager |
|
inline |
Get a mutable accessor to a map containing the list of each edges for each faces.
Definition at line 358 of file FaceManager.hpp.
|
inline |
Get an immutable accessor to a map containing the list of each edges for each faces.
Definition at line 364 of file FaceManager.hpp.
|
inlinestaticconstexpr |
Get the default number of edge per face in edge list.
Definition at line 91 of file FaceManager.hpp.
|
inline |
Get a mutable accessor to the faces-to-element-index relation.
There is an implicit convention here.
elementList
binds a face index to two elements indices, like f -> (e0, e1)
. elementRegionList
and elementSubRegionList
respectively bind face index to the regions/sub-regions: f -> (er0, er1)
and f -> (esr0, esr1)
.
It is assumed in the code that triplets obtained at indices 0
and 1
of all these pairs, (respectively (e0, er0, esr0)
and (e1, er1, esr1))
, are consistent. e0
should belong to both er0
and esr0
. e1
should belong to both er1
and esr1
.
In particular, any mismatch like (e.g.) f -> (e0, e1)
and f -> (er1, er0)
will probably result in a bug.
e
, er
or esr
will equal -1 if undefined. Definition at line 411 of file FaceManager.hpp.
|
inline |
Get an imutable accessor to the faces-to-element-index relation.
There is an implicit convention here.
elementList
binds a face index to two elements indices, like f -> (e0, e1)
. elementRegionList
and elementSubRegionList
respectively bind face index to the regions/sub-regions: f -> (er0, er1)
and f -> (esr0, esr1)
.
It is assumed in the code that triplets obtained at indices 0
and 1
of all these pairs, (respectively (e0, er0, esr0)
and (e1, er1, esr1))
, are consistent. e0
should belong to both er0
and esr0
. e1
should belong to both er1
and esr1
.
In particular, any mismatch like (e.g.) f -> (e0, e1)
and f -> (er1, er0)
will probably result in a bug.
e
, er
or esr
will equal -1 if undefined. Definition at line 418 of file FaceManager.hpp.
|
inline |
Get a mutable accessor to the faces-to-ElementRegion relation.
There is an implicit convention here.
elementList
binds a face index to two elements indices, like f -> (e0, e1)
. elementRegionList
and elementSubRegionList
respectively bind face index to the regions/sub-regions: f -> (er0, er1)
and f -> (esr0, esr1)
.
It is assumed in the code that triplets obtained at indices 0
and 1
of all these pairs, (respectively (e0, er0, esr0)
and (e1, er1, esr1))
, are consistent. e0
should belong to both er0
and esr0
. e1
should belong to both er1
and esr1
.
In particular, any mismatch like (e.g.) f -> (e0, e1)
and f -> (er1, er0)
will probably result in a bug.
e
, er
or esr
will equal -1 if undefined. Definition at line 371 of file FaceManager.hpp.
|
inline |
Get an immutable accessor to the faces-to-ElementRegion relation.
There is an implicit convention here.
elementList
binds a face index to two elements indices, like f -> (e0, e1)
. elementRegionList
and elementSubRegionList
respectively bind face index to the regions/sub-regions: f -> (er0, er1)
and f -> (esr0, esr1)
.
It is assumed in the code that triplets obtained at indices 0
and 1
of all these pairs, (respectively (e0, er0, esr0)
and (e1, er1, esr1))
, are consistent. e0
should belong to both er0
and esr0
. e1
should belong to both er1
and esr1
.
In particular, any mismatch like (e.g.) f -> (e0, e1)
and f -> (er1, er0)
will probably result in a bug.
e
, er
or esr
will equal -1 if undefined. Definition at line 378 of file FaceManager.hpp.
|
inline |
Get a mutable accessor to the faces-to-ElementSubRegion relation.
There is an implicit convention here.
elementList
binds a face index to two elements indices, like f -> (e0, e1)
. elementRegionList
and elementSubRegionList
respectively bind face index to the regions/sub-regions: f -> (er0, er1)
and f -> (esr0, esr1)
.
It is assumed in the code that triplets obtained at indices 0
and 1
of all these pairs, (respectively (e0, er0, esr0)
and (e1, er1, esr1))
, are consistent. e0
should belong to both er0
and esr0
. e1
should belong to both er1
and esr1
.
In particular, any mismatch like (e.g.) f -> (e0, e1)
and f -> (er1, er0)
will probably result in a bug.
e
, er
or esr
will equal -1 if undefined. Definition at line 385 of file FaceManager.hpp.
|
inline |
Get an immutable accessor to the faces-to-ElementSubRegion relation.
There is an implicit convention here.
elementList
binds a face index to two elements indices, like f -> (e0, e1)
. elementRegionList
and elementSubRegionList
respectively bind face index to the regions/sub-regions: f -> (er0, er1)
and f -> (esr0, esr1)
.
It is assumed in the code that triplets obtained at indices 0
and 1
of all these pairs, (respectively (e0, er0, esr0)
and (e1, er1, esr1))
, are consistent. e0
should belong to both er0
and esr0
. e1
should belong to both er1
and esr1
.
In particular, any mismatch like (e.g.) f -> (e0, e1)
and f -> (er1, er0)
will probably result in a bug.
e
, er
or esr
will equal -1 if undefined. Definition at line 392 of file FaceManager.hpp.
|
overridevirtual |
Enforce child faces and parent faces to have opposite normals.
[in] | targetIndices | set of face indices for which the enforcement has to be done |
Reimplemented from geos::ObjectManagerBase.
|
overridevirtual |
Extract a face-to-nodes map with global indexed for boundary faces.
[in] | nodeManager | mesh nodeManager |
Reimplemented from geos::ObjectManagerBase.
Get a mutable accessor to an array containing all the face area.
this array is mutable so it can be used to compute or modify the face area in this FaceManager
Definition at line 305 of file FaceManager.hpp.
|
inline |
Get an immutable accessor to an array containing all the face area.
Definition at line 311 of file FaceManager.hpp.
Get a mutable accessor to an array containing all the face center.
this array is mutable so it can be used to compute or modify the face centers in this FaceManager
Definition at line 319 of file FaceManager.hpp.
|
inline |
Get an immutable accessor to an array containing all the face centers.
Definition at line 326 of file FaceManager.hpp.
Get a mutable accessor to an array containing all the face normals.
this array is mutable so it can be used to compute or modify the face normals in this FaceManager
Definition at line 334 of file FaceManager.hpp.
|
inline |
Get an immutable accessor to an array containing all the face normals.
Definition at line 340 of file FaceManager.hpp.
void geos::FaceManager::fixUpDownMaps | ( | bool const | clearIfUnmapped | ) |
Call fixUpDownMaps for nodes-to-edges and nodes-to-faces maps.
Packed data are meant to be communicated to other MPI ranks
[in] | clearIfUnmapped | boolean: true to remove if it is not mapped |
|
inlineoverridevirtual |
Provide a virtual access to catalogName().
Implements geos::ObjectManagerBase.
Definition at line 72 of file FaceManager.hpp.
|
inlinestaticconstexpr |
}@
Get the maximum number of nodes per face.
Definition at line 442 of file FaceManager.hpp.
|
inline |
Get a mutable accessor to a map containing the list of each nodes for each faces.
Definition at line 346 of file FaceManager.hpp.
|
inline |
Get an immutable accessor to a map containing the list of each nodes for each faces.
Definition at line 352 of file FaceManager.hpp.
|
inlinestaticconstexpr |
Get the default number of node per face in node list.
Definition at line 82 of file FaceManager.hpp.
|
overridevirtual |
Pack an array of node indices into a buffer.
Packed data are meant to be communicated to other MPI ranks
[in,out] | buffer | buffer to pack the node index data into |
[in] | packList | the indices of nodes that should be packed |
Reimplemented from geos::ObjectManagerBase.
|
overridevirtual |
Calculate the size that a list would have if it were packed, but without actually packing it.
Packed data are meant to be communicated to other MPI ranks
[in] | packList | the list of node indices that we wish to get the size of after packing |
Reimplemented from geos::ObjectManagerBase.
|
overridevirtual |
Extend base class resize method resizing m_toNodesRelation, m_toEdgesRelation member containers.
the newSize
of this FaceManager is the number of faces it will contain
[in] | newsize | new size the FaceManager. |
Reimplemented from geos::dataRepository::Group.
void geos::FaceManager::setDomainBoundaryObjects | ( | ElementRegionManager const & | elemRegionManager | ) |
Builds the face-on-domain-boundary indicator.
[in] | elemRegionManager | The element region manager. |
void geos::FaceManager::setGeometricalRelations | ( | CellBlockManagerABC const & | cellBlockManager, |
ElementRegionManager const & | elemRegionManager, | ||
NodeManager const & | nodeManager, | ||
bool | isBaseMeshLevel | ||
) |
Copies the nodes positions and the faces to (nodes|edges|elements) mappings from cellBlockManager
. Computes the faces center, area and normal too.
[in] | cellBlockManager | Provides the mappings. |
[in] | elemRegionManager | element region manager, needed to map blocks to subregion |
[in] | nodeManager | Provides the nodes positions. |
[in] | isBaseMeshLevel | True if this manager belonds to the base mesh level, false otherwise |
void geos::FaceManager::setupRelatedObjectsInRelations | ( | NodeManager const & | nodeManager, |
EdgeManager const & | edgeManager, | ||
ElementRegionManager const & | elemRegionManager | ||
) |
Link the current manager to other managers.
[in] | nodeManager | The node manager instance. |
[in] | edgeManager | The edge manager instance. |
[in] | elemRegionManager | The element region manager instance. |
void geos::FaceManager::sortAllFaceNodes | ( | NodeManager const & | nodeManager, |
ElementRegionManager const & | elemManager | ||
) |
Sort all faces nodes counterclockwisely in m_toNodesRelation.
[in] | nodeManager | node manager allowing access to face nodes coordinates |
[in] | elemManager | element manager allowing access to the cell elements |
|
static |
Reorder face nodes to be labeled counter-clockwise resulting in outgoing normal.
[in] | X | array view of mesh nodes coordinates |
[in] | elementCenter | coordinate of the element center |
[in,out] | faceNodes | reordered local label list of nodes |
|
inline |
Get a mutable accessor to the faces-to-element-index relation.
The returned ElemMapType gives access, for one face to the element index, the element sub region, and the element region.
Definition at line 426 of file FaceManager.hpp.
|
inline |
Get an immutable accessor to the faces-to-element-index relation.
The returned ElemMapType gives access, for one face to the element index, the element sub region, and the element region.
Definition at line 434 of file FaceManager.hpp.
|
overridevirtual |
Unpack a buffer to an array of node indices.
Packed data are meant to be communicated to other MPI ranks
[in] | buffer | buffer with the packed data |
[in,out] | packList | an array of localIndex values that we wish to unpack to |
[in] | overwriteUpMaps | boolean: true to overwrite the previous Up maps |
[in] | overwriteDownMaps | boolean: true to overwrite the previous Down maps |