GEOS
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The ElementRegionManager class provides an interface to ObjectManagerBase in order to manage ElementRegion data. More...
#include <ElementRegionManager.hpp>
Classes | |
struct | groupKeyStruct |
Group key associated with elementRegionsGroup. More... | |
Public Types | |
template<typename VIEWTYPE > | |
using | ElementViewAccessor = array1d< array1d< VIEWTYPE > > |
The ElementViewAccessor at the ElementRegionManager level is an array of array of VIEWTYPE. More... | |
template<typename VIEWTYPE > | |
using | ElementView = typename ElementViewAccessor< VIEWTYPE >::NestedViewType |
The ElementViewAccessor at the ElementRegionManager level is the type resulting from ElementViewAccessor< VIEWTYPE >::toNestedView(). More... | |
template<typename VIEWTYPE > | |
using | ElementViewConst = typename ElementViewAccessor< VIEWTYPE >::NestedViewTypeConst |
The ElementViewAccessor at the ElementRegionManager level is the type resulting from ElementViewAccessor< VIEWTYPE >::toNestedViewConst(). More... | |
template<typename VIEWTYPE > | |
using | ElementReferenceAccessor = array1d< array1d< ReferenceWrapper< VIEWTYPE > > > |
The ElementViewAccessor at the ElementRegionManager level is a 2D array of ReferenceWrapper around VIEWTYPE. More... | |
template<typename VIEWTYPE > | |
using | MaterialViewAccessor = array1d< array1d< array1d< VIEWTYPE > > > |
The MaterialViewAccessor at the ElementRegionManager level is a 3D array of VIEWTYPE. More... | |
template<typename CONSTITUTIVE_TYPE > | |
using | ConstitutiveRelationAccessor = array1d< array1d< array1d< CONSTITUTIVE_TYPE * > > > |
The ConstitutiveRelationAccessor at the ElementRegionManager level is a 3D array of CONSTITUTIVE_TYPE. More... | |
Public Types inherited from geos::ObjectManagerBase | |
using | CatalogInterface = dataRepository::CatalogInterface< ObjectManagerBase, string const &, dataRepository::Group *const > |
Nested type for the factory pattern, defining the base class (ObjectManagerBase) and the builder arguments (string const &, dataRepository::Group * const) of the derived products. | |
Public Types inherited from geos::dataRepository::Group | |
using | subGroupMap = MappedVector< Group, Group *, keyType, indexType > |
The template specialization of MappedVector to use for the collection of sub-Group objects. | |
using | wrapperMap = MappedVector< WrapperBase, WrapperBase *, keyType, indexType > |
The template specialization of MappedVector to use for the collection wrappers objects. | |
using | CatalogInterface = dataRepository::CatalogInterface< Group, string const &, Group *const > |
Type alias for catalog interface used by this class. See CatalogInterface. | |
Public Member Functions | |
virtual string | getCatalogName () const override final |
Virtual access to catalogName() More... | |
ElementRegionManager (string const &name, Group *const parent) | |
Constructor. More... | |
virtual | ~ElementRegionManager () override |
Destructor. | |
template<typename T = ElementSubRegionBase> | |
localIndex | getNumberOfElements () const |
Get the number of elements in all ElementSubRegions of type T. More... | |
void | generateMesh (CellBlockManagerABC const &cellBlockManager) |
Generate the mesh. Produce an error if a required cellBlock doesn't exist in the source mesh. More... | |
void | generateWells (CellBlockManagerABC const &cellBlockManager, MeshLevel &meshLevel) |
Generate the wells. More... | |
void | buildSets (NodeManager const &nodeManager) |
Build sets from the node sets. More... | |
virtual Group * | createChild (string const &childKey, string const &childName) override |
Create a new ElementRegion object as a child of this group. More... | |
virtual void | expandObjectCatalogs () override |
Expand any catalogs in the data structure. | |
virtual void | setSchemaDeviations (xmlWrapper::xmlNode schemaRoot, xmlWrapper::xmlNode schemaParent, integer documentationType) override |
Inform the schema generator of any deviations between the xml and GEOS data structures. More... | |
void | resize (integer_array const &numElements, string_array const ®ionNames, string_array const &elementTypes) |
Set the number of elements for a set of element regions. More... | |
virtual void | setMaxGlobalIndex () override final |
Set the maximum local and global index. | |
subGroupMap const & | getRegions () const |
Get a collection of element regions. More... | |
subGroupMap & | getRegions () |
Get a collection of element regions. More... | |
template<typename T = ElementRegionBase, typename KEY_TYPE = void> | |
T const & | getRegion (KEY_TYPE const &key) const |
Get a element region. More... | |
template<typename T = ElementRegionBase, typename KEY_TYPE = void> | |
T & | getRegion (KEY_TYPE const &key) |
Get a element region. More... | |
template<typename T = ElementRegionBase> | |
bool | hasRegion (string const &name) const |
Determines if an ElementRegion with the input name exists. More... | |
localIndex | numRegions () const |
Get number of the regions. More... | |
array2d< localIndex > | getCellBlockToSubRegionMap (CellBlockManagerABC const &cellBlockManager) const |
Produce a map from cell block indices to element region and subregion indices. More... | |
template<typename REGIONTYPE = ElementRegionBase, typename ... REGIONTYPES, typename LAMBDA > | |
void | forElementRegions (LAMBDA &&lambda) |
This function is used to launch kernel function over all the element regions with region type = ElementRegionBase. More... | |
template<typename REGIONTYPE = ElementRegionBase, typename ... REGIONTYPES, typename LAMBDA > | |
void | forElementRegions (LAMBDA &&lambda) const |
This const function is used to launch kernel function over all the element regions with region type = ElementRegionBase. More... | |
template<typename REGIONTYPE = ElementRegionBase, typename ... REGIONTYPES, typename LOOKUP_CONTAINER , typename LAMBDA > | |
void | forElementRegions (LOOKUP_CONTAINER const &targetRegions, LAMBDA &&lambda) |
This function is used to launch kernel function over the target element regions with region type = ElementRegionBase. More... | |
template<typename REGIONTYPE = ElementRegionBase, typename ... REGIONTYPES, typename LOOKUP_CONTAINER , typename LAMBDA > | |
void | forElementRegions (LOOKUP_CONTAINER const &targetRegions, LAMBDA &&lambda) const |
This const function is used to launch kernel function over the target element regions with region type = ElementRegionBase. More... | |
template<typename LAMBDA > | |
void | forElementRegionsComplete (LAMBDA lambda) const |
This const function is used to launch kernel function over all the types of element regions. More... | |
template<typename LAMBDA > | |
void | forElementRegionsComplete (LAMBDA lambda) |
This function is used to launch kernel function over all the types of element regions. More... | |
template<typename REGIONTYPE , typename ... REGIONTYPES, typename LAMBDA > | |
void | forElementRegionsComplete (LAMBDA lambda) |
This function is used to launch kernel function over all the element regions that can be casted to one of the specified region types. More... | |
template<typename REGIONTYPE , typename ... REGIONTYPES, typename LAMBDA > | |
void | forElementRegionsComplete (LAMBDA lambda) const |
This const function is used to launch kernel function over all the element regions that can be casted to one of the specified region types. More... | |
template<typename LOOKUP_CONTAINER , typename LAMBDA > | |
void | forElementRegionsComplete (LOOKUP_CONTAINER const &targetRegions, LAMBDA lambda) const |
This const function is used to launch kernel function over the specified target element regions. More... | |
template<typename LOOKUP_CONTAINER , typename LAMBDA > | |
void | forElementRegionsComplete (LOOKUP_CONTAINER const &targetRegions, LAMBDA lambda) |
This function is used to launch kernel function over the specified target element regions. More... | |
template<typename REGIONTYPE , typename ... REGIONTYPES, typename LOOKUP_CONTAINER , typename LAMBDA > | |
void | forElementRegionsComplete (LOOKUP_CONTAINER const &targetRegions, LAMBDA lambda) |
This function is used to launch kernel function over the specified target element regions with region type = specified element region types. More... | |
template<typename REGIONTYPE , typename ... REGIONTYPES, typename LOOKUP_CONTAINER , typename LAMBDA > | |
void | forElementRegionsComplete (LOOKUP_CONTAINER const &targetRegions, LAMBDA lambda) const |
This const function is used to launch kernel function over the specified target element regions with region type = specified element region types. More... | |
template<typename LAMBDA > | |
void | forElementSubRegions (LAMBDA &&lambda) |
This function is used to launch kernel function over the element subregions of all the subregion types. More... | |
template<typename LAMBDA > | |
void | forElementSubRegions (LAMBDA &&lambda) const |
This const function is used to launch kernel function over the element subregions of all the subregion types. More... | |
template<typename LOOKUP_CONTAINER , typename LAMBDA > | |
void | forElementSubRegions (LOOKUP_CONTAINER const &targetRegions, LAMBDA &&lambda) |
This function is used to launch kernel function over the specified target element subregions. More... | |
template<typename LOOKUP_CONTAINER , typename LAMBDA > | |
void | forElementSubRegions (LOOKUP_CONTAINER const &targetRegions, LAMBDA &&lambda) const |
This const function is used to launch kernel function over the specified target element subregions. More... | |
template<typename SUBREGIONTYPE , typename ... SUBREGIONTYPES, typename LAMBDA > | |
void | forElementSubRegions (LAMBDA &&lambda) |
This function is used to launch kernel function over the element subregions of the specified subregion types. More... | |
template<typename SUBREGIONTYPE , typename ... SUBREGIONTYPES, typename LAMBDA > | |
void | forElementSubRegions (LAMBDA &&lambda) const |
This const function is used to launch kernel function over the element subregions of the specified subregion types. More... | |
template<typename SUBREGIONTYPE , typename ... SUBREGIONTYPES, typename LOOKUP_CONTAINER , typename LAMBDA > | |
void | forElementSubRegions (LOOKUP_CONTAINER const &targetRegions, LAMBDA &&lambda) |
This function is used to launch kernel function over the specified target element subregions with the specified subregion types. More... | |
template<typename SUBREGIONTYPE , typename ... SUBREGIONTYPES, typename LOOKUP_CONTAINER , typename LAMBDA > | |
void | forElementSubRegions (LOOKUP_CONTAINER const &targetRegions, LAMBDA &&lambda) const |
This const function is used to launch kernel function over the specified target element subregions with the specified subregion types. More... | |
template<typename LAMBDA > | |
void | forElementSubRegionsComplete (LAMBDA &&lambda) const |
This const function is used to launch kernel function over the element subregions of all subregion types. More... | |
template<typename LAMBDA > | |
void | forElementSubRegionsComplete (LAMBDA &&lambda) |
This function is used to launch kernel function over the element subregions of all subregion types. More... | |
template<typename LOOKUP_CONTAINER , typename LAMBDA > | |
void | forElementSubRegionsComplete (LOOKUP_CONTAINER const &targetRegions, LAMBDA &&lambda) |
This function is used to launch kernel function over the specified target element subregions. More... | |
template<typename LOOKUP_CONTAINER , typename LAMBDA > | |
void | forElementSubRegionsComplete (LOOKUP_CONTAINER const &targetRegions, LAMBDA &&lambda) const |
This const function is used to launch kernel function over the specified target element subregions. More... | |
template<typename SUBREGIONTYPE , typename ... SUBREGIONTYPES, typename LAMBDA > | |
void | forElementSubRegionsComplete (LAMBDA &&lambda) |
This function is used to launch kernel function over all the element subregions that can be casted to one of the specified subregion types. More... | |
template<typename SUBREGIONTYPE , typename ... SUBREGIONTYPES, typename LAMBDA > | |
void | forElementSubRegionsComplete (LAMBDA &&lambda) const |
This const function is used to launch kernel function over all the element subregions that can be casted to one of the specified subregion types. More... | |
template<typename SUBREGIONTYPE , typename ... SUBREGIONTYPES, typename LOOKUP_CONTAINER , typename LAMBDA > | |
void | forElementSubRegionsComplete (LOOKUP_CONTAINER const &targetRegions, LAMBDA &&lambda) |
This function is used to launch kernel function over the specified target element subregions that can be casted to one of the specified subregion types. More... | |
template<typename SUBREGIONTYPE , typename ... SUBREGIONTYPES, typename LOOKUP_CONTAINER , typename LAMBDA > | |
void | forElementSubRegionsComplete (LOOKUP_CONTAINER const &targetRegions, LAMBDA &&lambda) const |
This const function is used to launch kernel function over the specified target element subregions that can be casted to one of the specified subregion types. More... | |
template<typename FIELD_TRAIT > | |
ElementViewAccessor< traits::ViewTypeConst< typename FIELD_TRAIT::type > > | constructFieldAccessor (string const &neighborName=string()) const |
This is a const function to construct a ElementViewAccessor to access the data registered on the mesh. More... | |
template<typename VIEWTYPE , typename LHS = VIEWTYPE> | |
ElementViewAccessor< LHS > | constructViewAccessor (string const &name, string const &neighborName=string()) const |
This is a const function to construct a ElementViewAccessor to access the data registered on the mesh. More... | |
template<typename VIEWTYPE , typename LHS = VIEWTYPE> | |
ElementViewAccessor< LHS > | constructViewAccessor (string const &name, string const &neighborName=string()) |
This is a function to construct a ElementViewAccessor to access the data registered on the mesh. More... | |
template<typename T , int NDIM, typename PERM = defaultLayout< NDIM >> | |
ElementViewAccessor< ArrayView< T const, NDIM, getUSD< PERM > > > | constructArrayViewAccessor (string const &name, string const &neighborName=string()) const |
This is a function to construct a ElementViewAccessor to access array data registered on the mesh. More... | |
template<typename VIEWTYPE > | |
ElementViewAccessor< ReferenceWrapper< VIEWTYPE > > | constructReferenceAccessor (string const &viewName, string const &neighborName=string()) const |
This is a const function to construct a ElementViewAccessor to access the data registered on the mesh. More... | |
template<typename VIEWTYPE > | |
ElementViewAccessor< ReferenceWrapper< VIEWTYPE > > | constructReferenceAccessor (string const &viewName, string const &neighborName=string()) |
This is a function to construct a ElementViewAccessor to access the data registered on the mesh. More... | |
template<typename VIEWTYPE , typename LHS = VIEWTYPE> | |
MaterialViewAccessor< LHS > | constructFullMaterialViewAccessor (string const &viewName, constitutive::ConstitutiveManager const &cm) const |
This is a const function to construct a MaterialViewAccessor to access the material data. More... | |
template<typename VIEWTYPE , typename LHS = VIEWTYPE> | |
MaterialViewAccessor< LHS > | constructFullMaterialViewAccessor (string const &viewName, constitutive::ConstitutiveManager const &cm) |
This is a function to construct a MaterialViewAccessor to access the material data. More... | |
template<typename FIELD_TRAIT > | |
ElementViewAccessor< traits::ViewTypeConst< typename FIELD_TRAIT::type > > | constructMaterialFieldAccessor (arrayView1d< string const > const ®ionNames, arrayView1d< string const > const &materialNames, bool const allowMissingViews=false) const |
This is a const function to construct a MaterialViewAccessor to access the material data for specified regions/materials. More... | |
template<typename MATERIAL_TYPE , typename FIELD_TRAIT > | |
ElementViewAccessor< traits::ViewTypeConst< typename FIELD_TRAIT::type > > | constructMaterialFieldAccessor (bool const allowMissingViews=false) const |
This is a const function to construct a MaterialViewAccessor to access the material data for specified material type. More... | |
template<typename VIEWTYPE , typename LHS = VIEWTYPE> | |
ElementViewAccessor< LHS > | constructMaterialViewAccessor (string const &viewName, arrayView1d< string const > const ®ionNames, string const &materialKeyName, bool const allowMissingViews=false) const |
This is a const function to construct a MaterialViewAccessor to access the material data for specified regions/materials. More... | |
template<typename VIEWTYPE , typename LHS = VIEWTYPE> | |
ElementViewAccessor< LHS > | constructMaterialViewAccessor (string const &viewName, arrayView1d< string const > const ®ionNames, string const &materialKeyName, bool const allowMissingViews=false) |
This is a function to construct a MaterialViewAccessor to access the material data for specified regions/materials. More... | |
template<typename T , int NDIM, typename PERM = defaultLayout< NDIM >> | |
ElementViewAccessor< ArrayView< T const, NDIM, getUSD< PERM > > > | constructMaterialArrayViewAccessor (string const &viewName, arrayView1d< string const > const ®ionNames, string const &materialKeyName, bool const allowMissingViews=false) const |
Construct a view accessor for material data, assuming array as storage type. More... | |
template<typename MATERIALTYPE , typename VIEWTYPE , typename LHS = VIEWTYPE> | |
ElementViewAccessor< LHS > | constructMaterialViewAccessor (string const &viewName) const |
Construct a const view accessor to material data for specified material type. More... | |
template<typename MATERIALTYPE , typename T , int NDIM, typename PERM = defaultLayout< NDIM >> | |
ElementViewAccessor< ArrayView< T const, NDIM, getUSD< PERM > > > | constructMaterialArrayViewAccessor (string const &viewName) const |
Construct a const view accessor for material data, assuming array as storage type. More... | |
template<typename CONSTITUTIVE_TYPE > | |
ConstitutiveRelationAccessor< CONSTITUTIVE_TYPE > | constructFullConstitutiveAccessor (constitutive::ConstitutiveManager const &cm) const |
Construct a ConstitutiveRelationAccessor. More... | |
template<typename CONSTITUTIVE_TYPE > | |
ConstitutiveRelationAccessor< CONSTITUTIVE_TYPE > | constructFullConstitutiveAccessor (constitutive::ConstitutiveManager const &cm) |
Construct a ConstitutiveRelationAccessor. More... | |
int | packSize (ElementViewAccessor< arrayView1d< localIndex > > const &packList) const |
Get the buffer size needed to pack all the wrappers of all the sub regions of all the regions. More... | |
int | pack (buffer_unit_type *&buffer, ElementViewAccessor< arrayView1d< localIndex > > const &packList) const |
Pack all the wrappers of all the sub regions of all the regions. More... | |
int | unpack (buffer_unit_type const *&buffer, ElementViewAccessor< arrayView1d< localIndex > > &packList) |
Unpack a buffer. More... | |
int | unpack (buffer_unit_type const *&buffer, ElementReferenceAccessor< array1d< localIndex > > &packList) |
Unpack a buffer. More... | |
int | packGlobalMapsSize (ElementViewAccessor< arrayView1d< localIndex > > const &packList) const |
Get the size of the buffer to be packed. More... | |
int | packGlobalMaps (buffer_unit_type *&buffer, ElementViewAccessor< arrayView1d< localIndex > > const &packList) const |
Pack a buffer. More... | |
int | unpackGlobalMaps (buffer_unit_type const *&buffer, ElementViewAccessor< ReferenceWrapper< localIndex_array > > &packList) |
Unpack a buffer. More... | |
int | packUpDownMapsSize (ElementViewAccessor< arrayView1d< localIndex > > const &packList) const |
Get the buffer size needed to pack element-to-node and element-to-face maps. More... | |
int | packUpDownMapsSize (ElementReferenceAccessor< array1d< localIndex > > const &packList) const |
Get the buffer size needed to pack element-to-node and element-to-face maps. More... | |
int | packUpDownMaps (buffer_unit_type *&buffer, ElementViewAccessor< arrayView1d< localIndex > > const &packList) const |
Pack element-to-node and element-to-face maps. More... | |
int | packUpDownMaps (buffer_unit_type *&buffer, ElementReferenceAccessor< array1d< localIndex > > const &packList) const |
Pack element-to-node and element-to-face maps. More... | |
int | unpackUpDownMaps (buffer_unit_type const *&buffer, ElementReferenceAccessor< localIndex_array > &packList, bool const overwriteMap) |
Unpack element-to-node and element-to-face maps. More... | |
int | packFaceElementToFaceSize (ElementViewAccessor< arrayView1d< localIndex > > const &packList) const |
Get the buffer size needed to pack element-to-node and element-to-face maps. More... | |
int | packFaceElementToFace (buffer_unit_type *&buffer, ElementViewAccessor< arrayView1d< localIndex > > const &packList) const |
Pack element-to-node and element-to-face maps. More... | |
int | unpackFaceElementToFace (buffer_unit_type const *&buffer, ElementReferenceAccessor< localIndex_array > &packList, bool const overwriteMap) |
Unpack element-to-node and element-to-face maps. More... | |
int | packFracturedElementsSize (ElementViewAccessor< arrayView1d< localIndex > > const &packList, string const fractureRegionName) const |
Get the buffer size needed to pack the set of fractured elements and the map toEmbSurfaces. More... | |
int | packFracturedElements (buffer_unit_type *&buffer, ElementViewAccessor< arrayView1d< localIndex > > const &packList, string const fractureRegionName) const |
Pack set of fractured elements and map toEmbSurfaces to a buffer or get the buffer size. More... | |
int | unpackFracturedElements (buffer_unit_type const *&buffer, ElementReferenceAccessor< localIndex_array > &packList, string const fractureRegionName) |
Unpack set of fractured elements and map toEmbSurfaces to a buffer or get the buffer size. More... | |
virtual void | outputObjectConnectivity () const override final |
Function to output connectivity in order to assist debugging issues with object connectivity. | |
virtual void | resize (localIndex const newSize) |
Resize the group and all contained wrappers that resize with parent. More... | |
virtual localIndex | packSize (string_array const &wrapperNames, integer const recursive, bool onDevice, parallelDeviceEvents &events) const |
Get the size required to pack a list of wrappers. More... | |
virtual localIndex | packSize (string_array const &wrapperNames, arrayView1d< localIndex const > const &packList, integer const recursive, bool onDevice, parallelDeviceEvents &events) const |
Get the size required to pack a list of indices within a list of wrappers. More... | |
localIndex | packSize (arrayView1d< localIndex const > const &packList, integer const recursive, bool onDevice, parallelDeviceEvents &events) const |
Get the size required to pack a list of indices for all registered wrappers. More... | |
virtual localIndex | pack (buffer_unit_type *&buffer, string_array const &wrapperNames, integer const recursive, bool onDevice, parallelDeviceEvents &events) const |
Pack a list of wrappers to a buffer. More... | |
virtual localIndex | pack (buffer_unit_type *&buffer, string_array const &wrapperNames, arrayView1d< localIndex const > const &packList, integer const recursive, bool onDevice, parallelDeviceEvents &events) const |
Pack a list of indices within a list of wrappers. More... | |
localIndex | pack (buffer_unit_type *&buffer, arrayView1d< localIndex const > const &packList, integer const recursive, bool onDevice, parallelDeviceEvents &events) const |
Pack a list of indices for all registered wrappers. More... | |
virtual localIndex | packGlobalMapsSize (arrayView1d< localIndex const > const &packList, integer const recursive) const |
Computes the pack size of the global maps elements in the @ packList. More... | |
virtual localIndex | packGlobalMaps (buffer_unit_type *&buffer, arrayView1d< localIndex const > const &packList, integer const recursive) const |
Packs the global maps elements in the @ packList. More... | |
virtual localIndex | unpackGlobalMaps (buffer_unit_type const *&buffer, localIndex_array &packList, integer const recursive) |
Unpacks the global maps from buffer . More... | |
virtual localIndex | packUpDownMapsSize (arrayView1d< localIndex const > const &packList) const |
Computes the pack size of the specific elements in the @ packList. More... | |
virtual localIndex | packUpDownMaps (buffer_unit_type *&buffer, arrayView1d< localIndex const > const &packList) const |
Packs the specific elements in the @ packList. More... | |
virtual localIndex | unpackUpDownMaps (buffer_unit_type const *&buffer, array1d< localIndex > &packList, bool const overwriteUpMaps, bool const overwriteDownMaps) |
Unpacks the specific elements in the @ packList. More... | |
virtual localIndex | unpack (buffer_unit_type const *&buffer, arrayView1d< localIndex > &packList, integer const recursive, bool onDevice, parallelDeviceEvents &events, MPI_Op op=MPI_REPLACE) override |
Unpack a buffer. More... | |
Public Member Functions inherited from geos::ObjectManagerBase | |
ObjectManagerBase (string const &name, dataRepository::Group *const parent) | |
Constructor. More... | |
~ObjectManagerBase () override | |
Destructor. | |
virtual localIndex | packSize (string_array const &wrapperNames, arrayView1d< localIndex const > const &packList, integer const recursive, bool onDevice, parallelDeviceEvents &events) const override |
Get the size required to pack a list of indices within a list of wrappers. More... | |
virtual localIndex | pack (buffer_unit_type *&buffer, string_array const &wrapperNames, arrayView1d< localIndex const > const &packList, integer const recursive, bool onDevice, parallelDeviceEvents &events) const override |
Pack a list of indices within a list of wrappers. More... | |
virtual localIndex | unpack (buffer_unit_type const *&buffer, arrayView1d< localIndex > &packList, integer const recursive, bool onDevice, parallelDeviceEvents &events, MPI_Op op=MPI_REPLACE) override |
Unpack a buffer. More... | |
template<bool DO_PACKING> | |
localIndex | packSets (buffer_unit_type *&buffer, arrayView1d< localIndex const > const &packList) const |
Packs the elements of each set that actually are in packList . More... | |
localIndex | unpackSets (buffer_unit_type const *&buffer) |
Unpack the content of buffer into the sets of the instance. More... | |
void | excludeWrappersFromPacking (std::set< string > const &wrapperNames) |
Registers wrappers that will be excluded from packing. More... | |
virtual localIndex | packGlobalMapsSize (arrayView1d< localIndex const > const &packList, integer const recursive) const |
Computes the pack size of the global maps elements in the @ packList. More... | |
virtual localIndex | packGlobalMaps (buffer_unit_type *&buffer, arrayView1d< localIndex const > const &packList, integer const recursive) const |
Packs the global maps elements in the @ packList. More... | |
void | setReceiveLists () |
Clear and redefines the ghosts to receive. | |
virtual localIndex | packUpDownMapsSize (arrayView1d< localIndex const > const &packList) const |
Computes the pack size of the specific elements in the @ packList. More... | |
virtual localIndex | packUpDownMaps (buffer_unit_type *&buffer, arrayView1d< localIndex const > const &packList) const |
Packs the specific elements in the @ packList. More... | |
virtual localIndex | unpackUpDownMaps (buffer_unit_type const *&buffer, array1d< localIndex > &packList, bool const overwriteUpMaps, bool const overwriteDownMaps) |
Unpacks the specific elements in the @ packList. More... | |
virtual localIndex | unpackGlobalMaps (buffer_unit_type const *&buffer, localIndex_array &packList, integer const recursive) |
Unpacks the global maps from buffer . More... | |
localIndex | packParentChildMapsSize (arrayView1d< localIndex const > const &packList) const |
Computes the pack size of the parent/child relations in packList . More... | |
localIndex | packParentChildMaps (buffer_unit_type *&buffer, arrayView1d< localIndex const > const &packList) const |
Packs the parent/child relations in packList . More... | |
localIndex | unpackParentChildMaps (buffer_unit_type const *&buffer, localIndex_array &packList) |
Unacks the parent/child relations in packList . More... | |
void | moveSets (LvArray::MemorySpace const targetSpace) |
Manually move all sets to a memory space. More... | |
localIndex | resize (localIndex const newSize, const bool) |
Resize the group and all contained wrappers that resize with parent. More... | |
SortedArray< localIndex > & | createSet (const string &newSetName) |
Creates a new set. More... | |
void | constructSetFromSetAndMap (SortedArrayView< localIndex const > const &inputSet, const array2d< localIndex > &map, const string &setName) |
Builds a new set on this instance given another objects set and the map between them. More... | |
void | constructSetFromSetAndMap (SortedArrayView< localIndex const > const &inputSet, const array1d< localIndex_array > &map, const string &setName) |
Builds a new set on this instance given another objects set and the map between them. More... | |
void | constructSetFromSetAndMap (SortedArrayView< localIndex const > const &inputSet, ArrayOfArraysView< localIndex const > const &map, const string &setName) |
Builds a new set on this instance given another objects set and the map between them. More... | |
void | constructGlobalToLocalMap () |
Constructs the global to local map. | |
array1d< globalIndex > | constructGlobalListOfBoundaryObjects () const |
Computes the (global) index list that are domain boundaries. More... | |
virtual ArrayOfSets< globalIndex > | extractMapFromObjectForAssignGlobalIndexNumbers (ObjectManagerBase const &nodeManager) |
Extract map from object and assign global indices. More... | |
void | setGhostRankForSenders (int const neighborRank) |
Defines neighborRank ownership for ghost objects. More... | |
localIndex | getNumberOfGhosts () const |
Get the number of ghost objects. More... | |
localIndex | getNumberOfLocalIndices () const |
Get the number of locally owned objects. More... | |
integer | splitObject (localIndex const indexToSplit, int const rank, localIndex &newIndex) |
Split object to deal with topology changes. More... | |
void | inheritGhostRankFromParent (std::set< localIndex > const &indices) |
sets the value of m_ghostRank to the value of the objects parent. More... | |
void | copyObject (localIndex const source, localIndex const destination) |
Copy object from source to @ destination. More... | |
void | eraseObject (std::set< localIndex > const &indicesToErase) |
Erase object from this object manager. More... | |
virtual void | enforceStateFieldConsistencyPostTopologyChange (std::set< localIndex > const &targetIndices) |
Updates the child and target indices after a topology change. More... | |
template<typename FIELD_TRAIT > | |
dataRepository::Wrapper< typename FIELD_TRAIT::type > & | registerField (string const &nameOfRegisteringObject) |
Register field with this ObjectManagerBase using a dataRepository::Wrapper . More... | |
template<typename FIELD_TRAIT > | |
dataRepository::Wrapper< typename FIELD_TRAIT::type > & | registerField (FIELD_TRAIT const &fieldTrait, typename FIELD_TRAIT::type *newObject) |
Helper function to register fields. More... | |
template<typename FIELD_TRAIT0 , typename FIELD_TRAIT1 , typename ... FIELD_TRAITS> | |
void | registerField (string const &nameOfRegisteringObject) |
Register a collection of fields with this ObjectManagerBase using a dataRepository::Wrapper. More... | |
template<typename FIELD_TRAIT > | |
GEOS_DECLTYPE_AUTO_RETURN | getField () const |
Get a view to the field associated with a trait from this ObjectManagerBase . More... | |
template<typename FIELD_TRAIT > | |
GEOS_DECLTYPE_AUTO_RETURN | getField () |
Get the field associated with a trait from this ObjectManagerBase . More... | |
template<typename FIELD_TRAIT > | |
bool | hasField () const |
Checks if a field has been registered. More... | |
virtual viewKeyStruct & | viewKeys () |
Get the view keys for Group access. More... | |
virtual viewKeyStruct const & | viewKeys () const |
Get the view keys for Group access, const version. More... | |
virtual groupKeyStruct & | groupKeys () |
Get the group keys for Group access. More... | |
virtual groupKeyStruct const & | groupKeys () const |
Get the group keys for Group access, const version. More... | |
Group & | sets () |
Get the group holding the object sets. More... | |
Group const & | sets () const |
Get the group holding the object sets, const version. More... | |
SortedArray< localIndex > & | getSet (string const &setName) |
Get a set by name. More... | |
SortedArrayView< localIndex const > | getSet (string const &setName) const |
Get a set by name, const version. More... | |
SortedArray< localIndex > & | externalSet () |
Get the external set. More... | |
SortedArrayView< localIndex const > | externalSet () const |
Get the external set, const version. More... | |
void | updateGlobalToLocalMap (localIndex const lid) |
Updates (if needed) the global index for local index lid . More... | |
arrayView1d< globalIndex > | localToGlobalMap () |
Get local to global map. More... | |
arrayView1d< globalIndex const > | localToGlobalMap () const |
Get local to global map, const version. More... | |
unordered_map< globalIndex, localIndex > const & | globalToLocalMap () const |
Get global to local map. More... | |
localIndex | globalToLocalMap (globalIndex const gid) const |
Retrieves the local index for given global index. More... | |
array1d< integer > const & | isExternal () |
Get the locality information of the objects. More... | |
arrayView1d< integer const > | isExternal () const |
Get the locality information of the objects. More... | |
array1d< integer > const & | ghostRank () |
Get the ghost information of each object. More... | |
arrayView1d< integer const > | ghostRank () const |
Get the ghost information of each object, const version. More... | |
NeighborData & | getNeighborData (int const rank) |
Get neighbor data for given rank . More... | |
NeighborData const & | getNeighborData (int const rank) const |
Get neighbor data for given rank , const version. More... | |
void | addNeighbor (int const rank) |
Add a neighbor for rank . More... | |
void | removeNeighbor (int const rank) |
Remove neighbor for rank . More... | |
globalIndex | localMaxGlobalIndex () const |
Get the local maximum global index on this rank. More... | |
globalIndex | maxGlobalIndex () const |
Get the maximum global index of all objects across all rank. See. More... | |
array1d< integer > & | getDomainBoundaryIndicator () |
Get the domain boundary indicator. More... | |
arrayView1d< integer const > | getDomainBoundaryIndicator () const |
Get the domain boundary indicator. More... | |
Public Member Functions inherited from geos::dataRepository::Group | |
template<typename LOG_LEVEL_INFO > | |
std::enable_if_t< geos::is_log_level_info< LOG_LEVEL_INFO >, void > | addLogLevel () |
Append a levelCondition and a log description to the description of the wrapped object given a log info struct. Must be called in constructor. More... | |
virtual bool | registerCallback (void *func, const std::type_info &funcType) |
Register a callback function on the group. More... | |
virtual void | reinit () |
Performs re-initialization of certain variable depending on the solver being used. | |
Group (string const &name, Group *const parent) | |
Constructor. More... | |
Group (string const &name, conduit::Node &rootNode) | |
Constructor. More... | |
Group (Group &&source)=default | |
Move constructor. More... | |
virtual | ~Group () |
Destructor, deletes all Groups and Wrappers owned by this Group. | |
Group ()=delete | |
Deleted default constructor. | |
Group (Group const &)=delete | |
Deleted copy constructor. | |
Group & | operator= (Group const &)=delete |
Deleted copy assignment operator. More... | |
Group & | operator= (Group &&)=delete |
Deleted move assignment operator. More... | |
void | printDataHierarchy (integer indent=0) const |
Prints the data hierarchy recursively. More... | |
string | dumpInputOptions () const |
string | dumpSubGroupsNames () const |
string | dumpWrappersNames () const |
template<typename T = Group> | |
T & | registerGroup (string const &name, std::unique_ptr< T > newObject) |
Register a new Group as a sub-group of current Group. More... | |
template<typename T = Group> | |
T & | registerGroup (string const &name, T *newObject) |
Register a new Group as a sub-group of current Group. More... | |
template<typename T = Group> | |
T & | registerGroup (string const &name) |
Register a new Group as a sub-group of current Group. More... | |
template<typename T = Group> | |
T & | registerGroup (subGroupMap::KeyIndex const &keyIndex) |
Register a new Group as a sub-group of current Group. More... | |
template<typename T = Group, typename TBASE = Group> | |
T & | registerGroup (string const &name, string const &catalogName) |
Register a new Group as a sub-group of current Group. More... | |
void | deregisterGroup (string const &name) |
Removes a child group from this group. More... | |
template<typename T = Group, typename KEY = void> | |
T * | getGroupPointer (KEY const &key) |
Return a pointer to a sub-group of the current Group. More... | |
template<typename T = Group, typename KEY = void> | |
T const * | getGroupPointer (KEY const &key) const |
Return a pointer to a sub-group of the current Group. More... | |
template<typename T = Group, typename KEY = void> | |
T & | getGroup (KEY const &key) |
Return a reference to a sub-group of the current Group. More... | |
template<typename T = Group, typename KEY = void> | |
T const & | getGroup (KEY const &key) const |
Return a reference to a sub-group of the current Group. More... | |
template<typename T = Group> | |
T & | getGroupByPath (string const &path) |
Retrieve a group from the hierarchy using a path. More... | |
template<typename T = Group> | |
T const & | getGroupByPath (string const &path) const |
Retrieve a group from the hierarchy using a path. More... | |
subGroupMap & | getSubGroups () |
Get the subgroups object. More... | |
subGroupMap const & | getSubGroups () const |
Get the subgroups object. More... | |
localIndex | numSubGroups () const |
return the number of sub groups in this Group More... | |
std::vector< string > | getSubGroupsNames () const |
template<typename T = Group> | |
bool | hasGroup (string const &name) const |
Check whether a sub-group exists. More... | |
template<typename T > | |
bool | hasSubGroupOfType () const |
Check whether a sub-group exists by type. More... | |
template<typename GROUPTYPE = Group, typename ... GROUPTYPES, typename LAMBDA > | |
void | forSubGroups (LAMBDA &&lambda) |
Apply the given functor to subgroups that can be casted to one of specified types. More... | |
template<typename GROUPTYPE = Group, typename ... GROUPTYPES, typename LAMBDA > | |
void | forSubGroups (LAMBDA &&lambda) const |
Apply the given functor to subgroups that can be casted to one of specified types. More... | |
template<typename GROUPTYPE = Group, typename ... GROUPTYPES, typename LAMBDA > | |
void | forSubGroupsIndex (LAMBDA &&lambda) |
Apply the given functor to subgroups that can be casted to one of specified types. More... | |
template<typename GROUPTYPE = Group, typename ... GROUPTYPES, typename LAMBDA > | |
void | forSubGroupsIndex (LAMBDA &&lambda) const |
Apply the given functor to subgroups that can be casted to one of specified types. More... | |
template<typename GROUPTYPE = Group, typename ... GROUPTYPES, typename LOOKUP_CONTAINER , typename LAMBDA > | |
void | forSubGroups (LOOKUP_CONTAINER const &subGroupKeys, LAMBDA &&lambda) |
Apply the given functor to subgroups that can be casted to one of specified types. More... | |
template<typename GROUPTYPE = Group, typename ... GROUPTYPES, typename LOOKUP_CONTAINER , typename LAMBDA > | |
void | forSubGroups (LOOKUP_CONTAINER const &subGroupKeys, LAMBDA &&lambda) const |
Apply the given functor to subgroups that can be casted to one of specified types. More... | |
template<typename LAMBDA > | |
void | forWrappers (LAMBDA &&lambda) |
Apply the given functor to wrappers. More... | |
template<typename LAMBDA > | |
void | forWrappers (LAMBDA &&lambda) const |
Apply the given functor to wrappers. More... | |
template<typename TYPE , typename ... TYPES, typename LAMBDA > | |
void | forWrappers (LAMBDA &&lambda) |
Apply the given functor to wrappers that can be cast to one of specified types. More... | |
template<typename TYPE , typename ... TYPES, typename LAMBDA > | |
void | forWrappers (LAMBDA &&lambda) const |
Apply the given functor to wrappers that can be cast to one of specified types. More... | |
virtual void | initialize_postMeshGeneration () |
initialization post generation of the mesh. | |
void | initialize () |
Run initialization functions on this and all subgroups. More... | |
virtual void | initializationOrder (string_array &order) |
Sets the initialization order for sub-Groups. More... | |
void | initializePostInitialConditions () |
Initialization routine to be called after calling ApplyInitialConditions(). More... | |
void | postRestartInitializationRecursive () |
Initialization routine to be called after calling reading a restart file. More... | |
void | processInputFileRecursive (xmlWrapper::xmlDocument &xmlDocument, xmlWrapper::xmlNode &targetNode) |
Recursively read values using ProcessInputFile() from the input file and put them into the wrapped values for this group. Also add the includes content to the xmlDocument when Include nodes are encountered. More... | |
void | processInputFileRecursive (xmlWrapper::xmlDocument &xmlDocument, xmlWrapper::xmlNode &targetNode, xmlWrapper::xmlNodePos const &nodePos) |
Same as processInputFileRecursive(xmlWrapper::xmlDocument &, xmlWrapper::xmlNode &) but allow to reuse an existing xmlNodePos. More... | |
void | postInputInitializationRecursive () |
Recursively call postInputInitialization() to apply post processing after reading input values. | |
template<typename T , typename TBASE = T> | |
Wrapper< TBASE > & | registerWrapper (string const &name, wrapperMap::KeyIndex::index_type *const rkey=nullptr) |
Create and register a Wrapper around a new object. More... | |
template<typename T , typename TBASE = T> | |
Wrapper< TBASE > & | registerWrapper (Group::wrapperMap::KeyIndex const &viewKey) |
Create and register a Wrapper around a new object. More... | |
template<typename T > | |
Wrapper< T > & | registerWrapper (string const &name, std::unique_ptr< T > newObject) |
Register a Wrapper around a given object and take ownership. More... | |
template<typename T > | |
Wrapper< T > & | registerWrapper (string const &name, T *newObject) |
Register a Wrapper around an existing object, does not take ownership of the object. More... | |
WrapperBase & | registerWrapper (std::unique_ptr< WrapperBase > wrapper) |
Register and take ownership of an existing Wrapper. More... | |
void | deregisterWrapper (string const &name) |
Removes a Wrapper from this group. More... | |
void | generateDataStructureSkeleton (integer const level) |
Build a complete datastructure for schema generation. More... | |
virtual void | registerDataOnMeshRecursive (Group &meshBodies) |
Calls RegisterDataOnMesh() recursively. More... | |
virtual void | registerDataOnMesh (Group &meshBodies) |
Register data on mesh entities. More... | |
virtual localIndex | packSize (string_array const &wrapperNames, integer const recursive, bool onDevice, parallelDeviceEvents &events) const |
Get the size required to pack a list of wrappers. More... | |
localIndex | packSize (arrayView1d< localIndex const > const &packList, integer const recursive, bool onDevice, parallelDeviceEvents &events) const |
Get the size required to pack a list of indices for all registered wrappers. More... | |
virtual localIndex | pack (buffer_unit_type *&buffer, string_array const &wrapperNames, integer const recursive, bool onDevice, parallelDeviceEvents &events) const |
Pack a list of wrappers to a buffer. More... | |
localIndex | pack (buffer_unit_type *&buffer, arrayView1d< localIndex const > const &packList, integer const recursive, bool onDevice, parallelDeviceEvents &events) const |
Pack a list of indices for all registered wrappers. More... | |
template<typename KEY > | |
WrapperBase const & | getWrapperBase (KEY const &key) const |
Return a reference to a WrapperBase stored in this group. More... | |
template<typename KEY > | |
WrapperBase & | getWrapperBase (KEY const &key) |
Return a reference to a WrapperBase stored in this group. More... | |
indexType | getWrapperIndex (string const &name) const |
wrapperMap const & | wrappers () const |
Get access to the internal wrapper storage. More... | |
wrapperMap & | wrappers () |
Get access to the internal wrapper storage. More... | |
indexType | numWrappers () const |
Return the number of wrappers. More... | |
std::vector< string > | getWrappersNames () const |
template<typename LOOKUP_TYPE > | |
bool | hasWrapper (LOOKUP_TYPE const &lookup) const |
Check if a wrapper exists. More... | |
template<typename T , typename LOOKUP_TYPE > | |
Wrapper< T > const & | getWrapper (LOOKUP_TYPE const &index) const |
Retrieve a Wrapper stored in this group. More... | |
template<typename T , typename LOOKUP_TYPE > | |
Wrapper< T > & | getWrapper (LOOKUP_TYPE const &index) |
Retrieve a Wrapper stored in this group. More... | |
template<typename T , typename LOOKUP_TYPE > | |
Wrapper< T > const * | getWrapperPointer (LOOKUP_TYPE const &index) const |
Retrieve a Wrapper stored in this group. More... | |
template<typename T , typename LOOKUP_TYPE > | |
Wrapper< T > * | getWrapperPointer (LOOKUP_TYPE const &index) |
Retrieve a Wrapper stored in this group. More... | |
template<typename T , typename LOOKUP_TYPE > | |
GEOS_DECLTYPE_AUTO_RETURN | getReference (LOOKUP_TYPE const &lookup) const |
Look up a wrapper and get reference to wrapped object. More... | |
template<typename T , typename LOOKUP_TYPE > | |
T & | getReference (LOOKUP_TYPE const &lookup) |
Look up a wrapper and get reference to wrapped object. More... | |
virtual void | resize (localIndex const newSize) |
Resize the group and all contained wrappers that resize with parent. More... | |
virtual void | reserve (indexType const newsize) |
Set the new capacity and reserve it in all wrappers that resize with parent. More... | |
localIndex | capacity () const |
Get the "capacity" of the group, which determines the capacity of resizable wrappers. More... | |
localIndex | size () const |
Get the "size" of the group, which determines the number of elements in resizable wrappers. More... | |
string const & | getName () const |
Get group name. More... | |
string | getPath () const |
Return the path of this Group in the data repository. Starts with '/' followed by the hierarchy of the children of the "Problem" in which the Group is. More... | |
DataContext const & | getDataContext () const |
template<typename KEY > | |
DataContext const & | getWrapperDataContext (KEY key) const |
Group & | getParent () |
Access the group's parent. More... | |
Group const & | getParent () const |
Access the group's parent. More... | |
bool | hasParent () const |
localIndex | getIndexInParent () const |
Get the group's index within its parent group. More... | |
localIndex | getSubGroupIndex (keyType const &key) const |
Get the index of a sub-Group within this group. More... | |
int | sizedFromParent () const |
Check whether this Group is resized when its parent is resized. More... | |
Group & | setSizedFromParent (int val) |
Set whether this wrapper is resized when its parent is resized. More... | |
RestartFlags | getRestartFlags () const |
Get flags that control restart output of this group. More... | |
void | setRestartFlags (RestartFlags flags) |
Set flags that control restart output of this group. More... | |
InputFlags | getInputFlags () const |
Get input flags for schema generation. More... | |
void | setInputFlags (InputFlags flags) |
Set input flags for schema generation. More... | |
conduit::Node & | getConduitNode () |
Return the Conduit node object associated with this group. More... | |
conduit::Node const & | getConduitNode () const |
Return the Conduit node object associated with this group. More... | |
void | prepareToWrite () |
Register the group and its wrappers with Conduit. | |
void | finishWriting () |
Write the group and its wrappers into Conduit. | |
void | loadFromConduit () |
Read the group and its wrappers from Conduit. | |
void | enableLogLevelInput () |
void | setLogLevel (integer const logLevel) |
Set verbosity level. More... | |
integer | getLogLevel () const |
Static Public Member Functions | |
static string | catalogName () |
The function is to return the name of the ElementRegionManager in the object catalog. More... | |
Static Public Member Functions inherited from geos::ObjectManagerBase | |
template<typename TYPE_RELATION > | |
static void | fixUpDownMaps (TYPE_RELATION &relation, map< localIndex, array1d< globalIndex > > &unmappedIndices, bool const clearIfUnmapped) |
Fixing the up/down maps by mapping the unmapped indices. More... | |
template<typename TYPE_RELATION > | |
static void | fixUpDownMaps (TYPE_RELATION &relation, map< localIndex, SortedArray< globalIndex > > &unmappedIndices, bool const clearIfUnmapped) |
Fixing the up/down maps by mapping the unmapped indices. More... | |
static void | fixUpDownMaps (ArrayOfSets< localIndex > &relation, unordered_map< globalIndex, localIndex > const &globalToLocal, map< localIndex, SortedArray< globalIndex > > &unmappedIndices, bool const clearIfUnmapped) |
Fixing the up/down maps by mapping the unmapped indices. More... | |
static void | cleanUpMap (std::set< localIndex > const &targetIndices, array1d< SortedArray< localIndex > > &upmap, arrayView2d< localIndex const > const &downmap) |
Removes from the list of arrays of upmap all the elements for which the "mirror target array" of downmap does not contain the proper target index. More... | |
static void | cleanUpMap (std::set< localIndex > const &targetIndices, ArrayOfSetsView< localIndex > const &upmap, arrayView2d< localIndex const > const &downmap) |
Removes from the list of sets of upmap all the elements for which the "mirror target array" of downmap does not contain the proper target index. More... | |
static void | cleanUpMap (std::set< localIndex > const &targetIndices, array1d< SortedArray< localIndex > > &upmap, arrayView1d< arrayView1d< localIndex const > const > const &downmap) |
Removes from the list of arrays of upmap all the elements for which the "mirror target array" of downmap does not contain the proper target index. More... | |
static void | cleanUpMap (std::set< localIndex > const &targetIndices, ArrayOfSetsView< localIndex > const &upmap, arrayView1d< arrayView1d< localIndex const > const > const &downmap) |
Removes from the list of sets of upmap all the elements for which the "mirror target array" of downmap does not contain the proper target index. More... | |
static void | cleanUpMap (std::set< localIndex > const &targetIndices, ArrayOfSetsView< localIndex > const &upmap, ArrayOfArraysView< localIndex const > const &downmap) |
Removes from the list of sets of upmap all the elements for which the "mirror target array" of downmap does not contain the proper target index. More... | |
static localIndex | getParentRecursive (arraySlice1d< localIndex const > const &parentIndices, localIndex const lookup) |
Get the upmost parent. More... | |
static CatalogInterface::CatalogType & | getCatalog () |
Acessing the unique instance of this catalog. More... | |
Static Public Member Functions inherited from geos::dataRepository::Group | |
template<typename T0 , typename T1 , typename ... CASTTYPES, typename CONTAINERTYPE , typename LAMBDA > | |
static bool | applyLambdaToContainer (CONTAINERTYPE &container, LAMBDA &&lambda) |
Apply a given functor to a container if the container can be cast to one of the specified types. More... | |
static CatalogInterface::CatalogType & | getCatalog () |
Get the singleton catalog for this Group. More... | |
Static Public Attributes | |
constexpr static int | maxNumNodesPerElem = 8 |
Additional Inherited Members | |
Public Attributes inherited from geos::ObjectManagerBase | |
struct geos::ObjectManagerBase::viewKeyStruct | m_ObjectManagerBaseViewKeys |
viewKey struct for the ObjectManagerBase class | |
struct geos::ObjectManagerBase::groupKeyStruct | m_ObjectManagerBaseGroupKeys |
groupKey struct for the ObjectManagerBase class | |
Protected Member Functions inherited from geos::dataRepository::Group | |
virtual void | postInputInitialization () |
virtual void | initializePreSubGroups () |
Called by Initialize() prior to initializing sub-Groups. | |
virtual void | initializePostSubGroups () |
Called by Initialize() after to initializing sub-Groups. | |
virtual void | initializePostInitialConditionsPreSubGroups () |
Called by InitializePostInitialConditions() prior to initializing sub-Groups. | |
virtual void | initializePostInitialConditionsPostSubGroups () |
Called by InitializePostInitialConditions() after to initializing sub-Groups. | |
virtual void | postRestartInitialization () |
Performs initialization required after reading from a restart file. | |
Protected Attributes inherited from geos::ObjectManagerBase | |
Group | m_sets |
Group that holds object sets. | |
std::set< string > | m_packingExclusionList |
Names of the wrappers that should not be packed. | |
Group | m_neighborGroup |
Group that holds all the NeighborData objects. | |
array1d< globalIndex > | m_localToGlobalMap |
Contains the global index of each object. | |
unordered_map< globalIndex, localIndex > | m_globalToLocalMap |
Map from object global index to the local index. | |
array1d< integer > | m_isExternal |
Array that holds if an object is external. | |
array1d< integer > | m_domainBoundaryIndicator |
Domain boundary indicator: 1 means the "index" is on the boundary. | |
array1d< integer > | m_ghostRank |
Array that holds the ghost information about each object. More... | |
unordered_map< int, NeighborData > | m_neighborData |
A map from rank to the associated NeighborData object. | |
real64 | m_overAllocationFactor = 1.1 |
Factor by which to overallocate when adding objects. | |
globalIndex | m_maxGlobalIndex = -1 |
The maximum global index of all objects across all rank. | |
globalIndex | m_localMaxGlobalIndex = -1 |
The maximum global index of any object of all objects on this rank. | |
The ElementRegionManager class provides an interface to ObjectManagerBase in order to manage ElementRegion data.
Definition at line 42 of file ElementRegionManager.hpp.
using geos::ElementRegionManager::ConstitutiveRelationAccessor = array1d< array1d< array1d< CONSTITUTIVE_TYPE * > > > |
The ConstitutiveRelationAccessor at the ElementRegionManager level is a 3D array of CONSTITUTIVE_TYPE.
CONSTITUTIVE_TYPE | constitutive type |
Definition at line 103 of file ElementRegionManager.hpp.
using geos::ElementRegionManager::ElementReferenceAccessor = array1d< array1d< ReferenceWrapper< VIEWTYPE > > > |
The ElementViewAccessor at the ElementRegionManager level is a 2D array of ReferenceWrapper around VIEWTYPE.
VIEWTYPE | data type |
Definition at line 88 of file ElementRegionManager.hpp.
using geos::ElementRegionManager::ElementView = typename ElementViewAccessor< VIEWTYPE >::NestedViewType |
The ElementViewAccessor at the ElementRegionManager level is the type resulting from ElementViewAccessor< VIEWTYPE >::toNestedView().
VIEWTYPE | data type |
Definition at line 73 of file ElementRegionManager.hpp.
using geos::ElementRegionManager::ElementViewAccessor = array1d< array1d< VIEWTYPE > > |
The ElementViewAccessor at the ElementRegionManager level is an array of array of VIEWTYPE.
VIEWTYPE | data type |
Definition at line 65 of file ElementRegionManager.hpp.
using geos::ElementRegionManager::ElementViewConst = typename ElementViewAccessor< VIEWTYPE >::NestedViewTypeConst |
The ElementViewAccessor at the ElementRegionManager level is the type resulting from ElementViewAccessor< VIEWTYPE >::toNestedViewConst().
VIEWTYPE | data type |
Definition at line 81 of file ElementRegionManager.hpp.
using geos::ElementRegionManager::MaterialViewAccessor = array1d< array1d< array1d< VIEWTYPE > > > |
The MaterialViewAccessor at the ElementRegionManager level is a 3D array of VIEWTYPE.
VIEWTYPE | data type var[elementRegionIndex][elementSubRegionIndex][materialIndexInRegion] |
Definition at line 96 of file ElementRegionManager.hpp.
Constructor.
[in] | name | the name of this ObjectManager |
[in] | parent | the parent Group |
void geos::ElementRegionManager::buildSets | ( | NodeManager const & | nodeManager | ) |
Build sets from the node sets.
[in] | nodeManager | The node manager that will provide the node sets. |
|
inlinestatic |
The function is to return the name of the ElementRegionManager in the object catalog.
Definition at line 109 of file ElementRegionManager.hpp.
ElementRegionManager::ElementViewAccessor< ArrayView< T const, NDIM, getUSD< PERM > > > geos::ElementRegionManager::constructArrayViewAccessor | ( | string const & | name, |
string const & | neighborName = string() |
||
) | const |
This is a function to construct a ElementViewAccessor to access array data registered on the mesh.
T | data type |
NDIM | number of array dimensions |
PERM | layout permutation sequence type |
name | view name of the data |
neighborName | neighbor data name |
Definition at line 1305 of file ElementRegionManager.hpp.
ElementRegionManager::ElementViewAccessor< traits::ViewTypeConst< typename FIELD_TRAIT::type > > geos::ElementRegionManager::constructFieldAccessor | ( | string const & | neighborName = string() | ) | const |
This is a const function to construct a ElementViewAccessor to access the data registered on the mesh.
FIELD_TRAIT | field type |
neighborName | neighbor data name |
Definition at line 1296 of file ElementRegionManager.hpp.
ElementRegionManager::ConstitutiveRelationAccessor< CONSTITUTIVE_TYPE > geos::ElementRegionManager::constructFullConstitutiveAccessor | ( | constitutive::ConstitutiveManager const & | cm | ) |
Construct a ConstitutiveRelationAccessor.
CONSTITUTIVE_TYPE | constitutive type |
cm | pointer to ConstitutiveManager |
Definition at line 1664 of file ElementRegionManager.hpp.
ElementRegionManager::ConstitutiveRelationAccessor< CONSTITUTIVE_TYPE > geos::ElementRegionManager::constructFullConstitutiveAccessor | ( | constitutive::ConstitutiveManager const & | cm | ) | const |
Construct a ConstitutiveRelationAccessor.
CONSTITUTIVE_TYPE | constitutive type |
cm | pointer to ConstitutiveManager |
Definition at line 1631 of file ElementRegionManager.hpp.
ElementRegionManager::MaterialViewAccessor< LHS > geos::ElementRegionManager::constructFullMaterialViewAccessor | ( | string const & | viewName, |
constitutive::ConstitutiveManager const & | cm | ||
) |
This is a function to construct a MaterialViewAccessor to access the material data.
VIEWTYPE | data type |
viewName | view name of the data |
cm | pointer to ConstitutiveManager |
Definition at line 1413 of file ElementRegionManager.hpp.
ElementRegionManager::MaterialViewAccessor< LHS > geos::ElementRegionManager::constructFullMaterialViewAccessor | ( | string const & | viewName, |
constitutive::ConstitutiveManager const & | cm | ||
) | const |
This is a const function to construct a MaterialViewAccessor to access the material data.
VIEWTYPE | data type |
viewName | view name of the data |
cm | pointer to ConstitutiveManager |
Definition at line 1375 of file ElementRegionManager.hpp.
ElementRegionManager::ElementViewAccessor< ArrayView< T const, NDIM, getUSD< PERM > > > geos::ElementRegionManager::constructMaterialArrayViewAccessor | ( | string const & | viewName | ) | const |
Construct a const view accessor for material data, assuming array as storage type.
MATERIALTYPE | |
T | underlying data type |
NDIM | number of array dimensions |
PERM | layout permutation sequence type |
viewName | view name of the data |
Definition at line 1624 of file ElementRegionManager.hpp.
ElementRegionManager::ElementViewAccessor< ArrayView< T const, NDIM, getUSD< PERM > > > geos::ElementRegionManager::constructMaterialArrayViewAccessor | ( | string const & | viewName, |
arrayView1d< string const > const & | regionNames, | ||
string const & | materialKeyName, | ||
bool const | allowMissingViews = false |
||
) | const |
Construct a view accessor for material data, assuming array as storage type.
T | underlying data type |
NDIM | number of array dimensions |
PERM | layout permutation sequence type |
viewName | view name of the data |
regionNames | list of region names |
materialKeyName | key of the wrapper that holds the material name on the subRegion. |
allowMissingViews | flag to indicate whether it is allowed to miss the specified material data in material list |
Definition at line 1573 of file ElementRegionManager.hpp.
ElementRegionManager::ElementViewAccessor< traits::ViewTypeConst< typename FIELD_TRAIT::type > > geos::ElementRegionManager::constructMaterialFieldAccessor | ( | arrayView1d< string const > const & | regionNames, |
arrayView1d< string const > const & | materialNames, | ||
bool const | allowMissingViews = false |
||
) | const |
This is a const function to construct a MaterialViewAccessor to access the material data for specified regions/materials.
FIELD_TRAIT | field trait |
regionNames | list of region names |
materialNames | list of corresponding material names |
allowMissingViews | flag to indicate whether it is allowed to miss the specified material data in material list |
Definition at line 1550 of file ElementRegionManager.hpp.
ElementRegionManager::ElementViewAccessor< traits::ViewTypeConst< typename FIELD_TRAIT::type > > geos::ElementRegionManager::constructMaterialFieldAccessor | ( | bool const | allowMissingViews = false | ) | const |
This is a const function to construct a MaterialViewAccessor to access the material data for specified material type.
MATERIAL_TYPE | base type of material model |
FIELD_TRAIT | field trait |
allowMissingViews | flag to indicate whether it is allowed to miss the specified material data in material list |
Definition at line 1563 of file ElementRegionManager.hpp.
ElementRegionManager::ElementViewAccessor< LHS > geos::ElementRegionManager::constructMaterialViewAccessor | ( | string const & | viewName | ) | const |
Construct a const view accessor to material data for specified material type.
MATERIALTYPE | base type of material model |
VIEWTYPE | data type |
viewName | view name of the data |
Definition at line 1587 of file ElementRegionManager.hpp.
ElementRegionManager::ElementViewAccessor< LHS > geos::ElementRegionManager::constructMaterialViewAccessor | ( | string const & | viewName, |
arrayView1d< string const > const & | regionNames, | ||
string const & | materialKeyName, | ||
bool const | allowMissingViews = false |
||
) |
This is a function to construct a MaterialViewAccessor to access the material data for specified regions/materials.
VIEWTYPE | data type |
viewName | view name of the data |
regionNames | list of region names |
materialKeyName | key of the wrapper that holds the material name on the subRegion. |
allowMissingViews | flag to indicate whether it is allowed to miss the specified material data in material list |
Definition at line 1502 of file ElementRegionManager.hpp.
ElementRegionManager::ElementViewAccessor< LHS > geos::ElementRegionManager::constructMaterialViewAccessor | ( | string const & | viewName, |
arrayView1d< string const > const & | regionNames, | ||
string const & | materialKeyName, | ||
bool const | allowMissingViews = false |
||
) | const |
This is a const function to construct a MaterialViewAccessor to access the material data for specified regions/materials.
VIEWTYPE | data type |
viewName | view name of the data |
regionNames | list of region names |
materialKeyName | key of the wrapper that holds the material name on the subRegion. |
allowMissingViews | flag to indicate whether it is allowed to miss the specified material data in material list |
Definition at line 1451 of file ElementRegionManager.hpp.
ElementRegionManager::ElementViewAccessor< ReferenceWrapper< VIEWTYPE > > geos::ElementRegionManager::constructReferenceAccessor | ( | string const & | viewName, |
string const & | neighborName = string() |
||
) |
This is a function to construct a ElementViewAccessor to access the data registered on the mesh.
VIEWTYPE | data type |
viewName | view name of the data |
neighborName | neighbor data name |
Definition at line 1345 of file ElementRegionManager.hpp.
ElementRegionManager::ElementViewAccessor< ReferenceWrapper< VIEWTYPE > > geos::ElementRegionManager::constructReferenceAccessor | ( | string const & | viewName, |
string const & | neighborName = string() |
||
) | const |
This is a const function to construct a ElementViewAccessor to access the data registered on the mesh.
VIEWTYPE | data type |
viewName | view name of the data |
neighborName | neighbor data name |
Definition at line 1315 of file ElementRegionManager.hpp.
ElementRegionManager::ElementViewAccessor< LHS > geos::ElementRegionManager::constructViewAccessor | ( | string const & | name, |
string const & | neighborName = string() |
||
) |
This is a function to construct a ElementViewAccessor to access the data registered on the mesh.
VIEWTYPE | data type |
name | view name of the data |
neighborName | neighbor data name |
Definition at line 1265 of file ElementRegionManager.hpp.
ElementRegionManager::ElementViewAccessor< LHS > geos::ElementRegionManager::constructViewAccessor | ( | string const & | name, |
string const & | neighborName = string() |
||
) | const |
This is a const function to construct a ElementViewAccessor to access the data registered on the mesh.
VIEWTYPE | data type |
name | view name of the data |
neighborName | neighbor data name |
Definition at line 1234 of file ElementRegionManager.hpp.
|
overridevirtual |
Create a new ElementRegion object as a child of this group.
childKey | catalog key of the new ElementRegion derived type to create |
childName | name of the new ElementRegion object |
Reimplemented from geos::dataRepository::Group.
|
inline |
This function is used to launch kernel function over all the element regions with region type = ElementRegionBase.
LAMBDA | type of the user-provided function |
lambda | kernel function |
Definition at line 285 of file ElementRegionManager.hpp.
|
inline |
This const function is used to launch kernel function over all the element regions with region type = ElementRegionBase.
LAMBDA | type of the user-provided function |
lambda | kernel function |
Definition at line 297 of file ElementRegionManager.hpp.
|
inline |
This function is used to launch kernel function over the target element regions with region type = ElementRegionBase.
LOOKUP_CONTAINER | type of container of names or indices |
LAMBDA | type of the user-provided function |
targetRegions | target element region names or indices |
lambda | kernel function |
Definition at line 311 of file ElementRegionManager.hpp.
|
inline |
This const function is used to launch kernel function over the target element regions with region type = ElementRegionBase.
LOOKUP_CONTAINER | type of container of names or indices |
LAMBDA | type of the user-provided function |
targetRegions | target element region names or indices |
lambda | kernel function |
Definition at line 325 of file ElementRegionManager.hpp.
|
inline |
This function is used to launch kernel function over all the types of element regions.
LAMBDA | type of the user-provided function |
lambda | kernel function |
Definition at line 348 of file ElementRegionManager.hpp.
|
inline |
This function is used to launch kernel function over all the element regions that can be casted to one of the specified region types.
LAMBDA | type of the user-provided function |
lambda | kernel function |
Definition at line 361 of file ElementRegionManager.hpp.
|
inline |
This const function is used to launch kernel function over all the types of element regions.
LAMBDA | type of the user-provided function |
lambda | kernel function |
Definition at line 336 of file ElementRegionManager.hpp.
|
inline |
This const function is used to launch kernel function over all the element regions that can be casted to one of the specified region types.
LAMBDA | type of the user-provided function |
lambda | kernel function |
Definition at line 381 of file ElementRegionManager.hpp.
|
inline |
This function is used to launch kernel function over the specified target element regions.
LOOKUP_CONTAINER | type of container of names or indices |
LAMBDA | type of the user-provided function |
targetRegions | target element region names or indices |
lambda | kernel function |
Definition at line 416 of file ElementRegionManager.hpp.
|
inline |
This function is used to launch kernel function over the specified target element regions with region type = specified element region types.
LOOKUP_CONTAINER | type of container of names or indices |
LAMBDA | type of the user-provided function |
targetRegions | target element region names or indices |
lambda | kernel function |
Definition at line 431 of file ElementRegionManager.hpp.
|
inline |
This const function is used to launch kernel function over the specified target element regions.
LOOKUP_CONTAINER | type of container of names or indices |
LAMBDA | type of the user-provided function |
targetRegions | target element region names or indices |
lambda | kernel function |
Definition at line 402 of file ElementRegionManager.hpp.
|
inline |
This const function is used to launch kernel function over the specified target element regions with region type = specified element region types.
LOOKUP_CONTAINER | type of container of names or indices |
LAMBDA | type of the user-provided function |
targetRegions | target element region names or indices |
lambda | kernel function |
Definition at line 449 of file ElementRegionManager.hpp.
|
inline |
This function is used to launch kernel function over the element subregions of all the subregion types.
LAMBDA | type of the user-provided function |
lambda | kernel function |
Definition at line 464 of file ElementRegionManager.hpp.
|
inline |
This function is used to launch kernel function over the element subregions of the specified subregion types.
LAMBDA | type of the user-provided function |
lambda | kernel function |
Definition at line 518 of file ElementRegionManager.hpp.
|
inline |
This const function is used to launch kernel function over the element subregions of all the subregion types.
LAMBDA | type of the user-provided function |
lambda | kernel function |
Definition at line 477 of file ElementRegionManager.hpp.
|
inline |
This const function is used to launch kernel function over the element subregions of the specified subregion types.
LAMBDA | type of the user-provided function |
lambda | kernel function |
Definition at line 538 of file ElementRegionManager.hpp.
|
inline |
This function is used to launch kernel function over the specified target element subregions.
LOOKUP_CONTAINER | type of container of names or indices |
LAMBDA | type of the user-provided function |
targetRegions | target element region names or indices |
lambda | kernel function |
Definition at line 491 of file ElementRegionManager.hpp.
|
inline |
This function is used to launch kernel function over the specified target element subregions with the specified subregion types.
LOOKUP_CONTAINER | type of container of names or indices |
LAMBDA | type of the user-provided function |
targetRegions | target element region names or indices |
lambda | kernel function |
Definition at line 559 of file ElementRegionManager.hpp.
|
inline |
This const function is used to launch kernel function over the specified target element subregions.
LOOKUP_CONTAINER | type of container of names or indices |
LAMBDA | type of the user-provided function |
targetRegions | target element region names or indices |
lambda | kernel function |
Definition at line 505 of file ElementRegionManager.hpp.
|
inline |
This const function is used to launch kernel function over the specified target element subregions with the specified subregion types.
LOOKUP_CONTAINER | type of container of names or indices |
LAMBDA | type of the user-provided function |
targetRegions | target element region names or indices |
lambda | kernel function |
Definition at line 581 of file ElementRegionManager.hpp.
|
inline |
This function is used to launch kernel function over the element subregions of all subregion types.
LAMBDA | type of the user-provided function |
lambda | kernel function |
Definition at line 612 of file ElementRegionManager.hpp.
|
inline |
This function is used to launch kernel function over all the element subregions that can be casted to one of the specified subregion types.
LAMBDA | type of the user-provided function |
lambda | kernel function |
Definition at line 653 of file ElementRegionManager.hpp.
|
inline |
This const function is used to launch kernel function over the element subregions of all subregion types.
LAMBDA | type of the user-provided function |
lambda | kernel function |
Definition at line 600 of file ElementRegionManager.hpp.
|
inline |
This const function is used to launch kernel function over all the element subregions that can be casted to one of the specified subregion types.
LAMBDA | type of the user-provided function |
lambda | kernel function |
Definition at line 678 of file ElementRegionManager.hpp.
|
inline |
This function is used to launch kernel function over the specified target element subregions.
LOOKUP_CONTAINER | type of container of names or indices |
LAMBDA | type of the user-provided function |
targetRegions | target element region names or indices |
lambda | kernel function |
Definition at line 626 of file ElementRegionManager.hpp.
|
inline |
This function is used to launch kernel function over the specified target element subregions that can be casted to one of the specified subregion types.
LOOKUP_CONTAINER | type of container of names or indices |
LAMBDA | type of the user-provided function |
targetRegions | target element region names or indices |
lambda | kernel function |
Definition at line 705 of file ElementRegionManager.hpp.
|
inline |
This const function is used to launch kernel function over the specified target element subregions.
LOOKUP_CONTAINER | type of container of names or indices |
LAMBDA | type of the user-provided function |
targetRegions | target element region names or indices |
lambda | kernel function |
Definition at line 640 of file ElementRegionManager.hpp.
|
inline |
This const function is used to launch kernel function over the specified target element subregions that can be casted to one of the specified subregion types.
LOOKUP_CONTAINER | type of container of names or indices |
LAMBDA | type of the user-provided function |
targetRegions | target element region names or indices |
lambda | kernel function |
Definition at line 735 of file ElementRegionManager.hpp.
void geos::ElementRegionManager::generateMesh | ( | CellBlockManagerABC const & | cellBlockManager | ) |
Generate the mesh. Produce an error if a required cellBlock doesn't exist in the source mesh.
[in,out] | cellBlockManager | Reference to the abstract cell block manager. |
void geos::ElementRegionManager::generateWells | ( | CellBlockManagerABC const & | cellBlockManager, |
MeshLevel & | meshLevel | ||
) |
Generate the wells.
[in] | cellBlockManager | pointer to cellBlockManager |
[in] | meshLevel | pointer to meshLevel |
|
inlinefinaloverridevirtual |
Virtual access to catalogName()
Implements geos::ObjectManagerBase.
Definition at line 116 of file ElementRegionManager.hpp.
array2d< localIndex > geos::ElementRegionManager::getCellBlockToSubRegionMap | ( | CellBlockManagerABC const & | cellBlockManager | ) | const |
Produce a map from cell block indices to element region and subregion indices.
cellBlockManager | the CellBlocKManager |
|
inline |
Get the number of elements in all ElementSubRegions of type T.
Definition at line 136 of file ElementRegionManager.hpp.
|
inline |
Get a element region.
key | The key of the element region, either name or number. |
std::domain_error | if the requested region doesn't exist. |
Definition at line 244 of file ElementRegionManager.hpp.
|
inline |
Get a element region.
key | The key of element region, either name or number. |
std::domain_error | if the requested region doesn't exist. |
Definition at line 232 of file ElementRegionManager.hpp.
|
inline |
Get a collection of element regions.
Definition at line 220 of file ElementRegionManager.hpp.
|
inline |
Get a collection of element regions.
Definition at line 211 of file ElementRegionManager.hpp.
|
inline |
Determines if an ElementRegion with the input name exists.
T | The type of ElementRegion. May be a specific derived type of ElementRegionBase. |
name | The name/key of the ElementRegion |
Definition at line 256 of file ElementRegionManager.hpp.
|
inline |
Get number of the regions.
Definition at line 265 of file ElementRegionManager.hpp.
localIndex geos::dataRepository::Group::pack |
Pack a list of indices for all registered wrappers.
[in,out] | buffer | the buffer that will be packed. |
[in] | packList | the list of indices to pack |
[in] | recursive | whether or not to perform a recursive pack. |
[in] | onDevice | whether to use device-based packing functions (buffer must be either pinned or a device pointer) |
[out] | events | a collection of events to poll for completion of async packing kernels ( device packing is incomplete until all events are finalized ) |
This function takes in a reference to a pointer buffer
, and packs data specified by wrapperNames
, packList
, and recursive
to that pointer location. The pointer is altered and returned to the new location corresponding the original value of buffer
plus the size of data packed to the buffer.
int geos::ElementRegionManager::pack | ( | buffer_unit_type *& | buffer, |
ElementViewAccessor< arrayView1d< localIndex > > const & | packList | ||
) | const |
Pack all the wrappers of all the sub regions of all the regions.
buffer | pointer to the buffer to be packed |
packList | list of indices to pack |
virtual localIndex geos::dataRepository::Group::pack |
Pack a list of indices within a list of wrappers.
[in,out] | buffer | the buffer that will be packed. |
[in] | wrapperNames | an array that contains the names of the wrappers to pack. |
[in] | packList | the list of indices to pack |
[in] | recursive | whether or not to perform a recursive pack. |
[in] | onDevice | whether to use device-based packing functions (buffer must be either pinned or a device pointer) |
[out] | events | a collection of events to poll for completion of async packing kernels ( device packing is incomplete until all events are finalized ) |
This function takes in a reference to a pointer buffer
, and packs data specified by wrapperNames
, packList
, and recursive
to that pointer location. The pointer is altered and returned to the new location corresponding the original value of buffer
plus the size of data packed to the buffer.
virtual localIndex geos::dataRepository::Group::pack |
Pack a list of wrappers to a buffer.
[in,out] | buffer | the buffer that will be packed. |
[in] | wrapperNames | an array that contains the names of the wrappers to pack. |
[in] | recursive | whether or not to perform a recursive pack. |
[in] | onDevice | whether to use device-based packing functions (buffer must be either pinned or a device pointer) |
[out] | events | a collection of events to poll for completion of async packing kernels ( device packing is incomplete until all events are finalized ) |
This function takes in a reference to a pointer buffer
, and packs data specified by wrapperNames
, and recursive
to that pointer location. The pointer is altered and returned to the new location corresponding the original value of buffer
plus the size of data packed to the buffer.
int geos::ElementRegionManager::packFaceElementToFace | ( | buffer_unit_type *& | buffer, |
ElementViewAccessor< arrayView1d< localIndex > > const & | packList | ||
) | const |
Pack element-to-node and element-to-face maps.
buffer | pointer to the buffer to be packed |
packList | list of indices to pack |
int geos::ElementRegionManager::packFaceElementToFaceSize | ( | ElementViewAccessor< arrayView1d< localIndex > > const & | packList | ) | const |
Get the buffer size needed to pack element-to-node and element-to-face maps.
packList | list of indices to pack |
int geos::ElementRegionManager::packFracturedElements | ( | buffer_unit_type *& | buffer, |
ElementViewAccessor< arrayView1d< localIndex > > const & | packList, | ||
string const | fractureRegionName | ||
) | const |
Pack set of fractured elements and map toEmbSurfaces to a buffer or get the buffer size.
buffer | pointer to the buffer to be packed |
packList | list of indices to pack |
fractureRegionName | name of the fracture region |
int geos::ElementRegionManager::packFracturedElementsSize | ( | ElementViewAccessor< arrayView1d< localIndex > > const & | packList, |
string const | fractureRegionName | ||
) | const |
Get the buffer size needed to pack the set of fractured elements and the map toEmbSurfaces.
packList | list of indices to pack |
fractureRegionName | name of the fracture region |
virtual localIndex geos::ObjectManagerBase::packGlobalMaps |
Packs the global maps elements in the @ packList.
buffer | The buffer that will receive the packed data. |
packList | The element we want packed. |
recursive | Boolean like integer for sub-groups packing. |
int geos::ElementRegionManager::packGlobalMaps | ( | buffer_unit_type *& | buffer, |
ElementViewAccessor< arrayView1d< localIndex > > const & | packList | ||
) | const |
Pack a buffer.
buffer | pointer to the buffer to be packed |
packList | list of indices to pack |
virtual localIndex geos::ObjectManagerBase::packGlobalMapsSize |
Computes the pack size of the global maps elements in the @ packList.
packList | The element we want packed. |
recursive | Boolean like integer for sub-groups packing. |
int geos::ElementRegionManager::packGlobalMapsSize | ( | ElementViewAccessor< arrayView1d< localIndex > > const & | packList | ) | const |
Get the size of the buffer to be packed.
packList | list of indices to pack |
localIndex geos::dataRepository::Group::packSize |
Get the size required to pack a list of indices for all registered wrappers.
[in] | packList | the list of indices to pack |
[in] | recursive | whether or not to perform a recursive pack. |
[in] | onDevice | whether to use device-based packing functions (buffer must be either pinned or a device pointer) |
[out] | events | a collection of events to poll for completion of async packing kernels ( device packing is incomplete until all events are finalized ) |
int geos::ElementRegionManager::packSize | ( | ElementViewAccessor< arrayView1d< localIndex > > const & | packList | ) | const |
Get the buffer size needed to pack all the wrappers of all the sub regions of all the regions.
packList | list of indices to pack |
virtual localIndex geos::dataRepository::Group::packSize |
Get the size required to pack a list of indices within a list of wrappers.
[in] | wrapperNames | an array that contains the names of the wrappers to pack. |
[in] | packList | the list of indices to pack |
[in] | recursive | whether or not to perform a recursive pack. |
[in] | onDevice | whether to use device-based packing functions (buffer must be either pinned or a device pointer) |
[out] | events | a collection of events to poll for completion of async packing kernels ( device packing is incomplete until all events are finalized ) |
virtual localIndex geos::dataRepository::Group::packSize |
Get the size required to pack a list of wrappers.
[in] | wrapperNames | an array that contains the names of the wrappers to pack. |
[in] | recursive | whether or not to perform a recursive pack. |
[in] | onDevice | whether to use device-based packing functions (buffer must be either pinned or a device pointer) |
[out] | events | a collection of events to poll for completion of async packing kernels ( device packing is incomplete until all events are finalized ) |
|
inline |
Packs the specific elements in the @ packList.
buffer | The buffer that will receive the packed data. |
packList | The element we want packed. |
Definition at line 165 of file ObjectManagerBase.hpp.
int geos::ElementRegionManager::packUpDownMaps | ( | buffer_unit_type *& | buffer, |
ElementReferenceAccessor< array1d< localIndex > > const & | packList | ||
) | const |
Pack element-to-node and element-to-face maps.
buffer | pointer to the buffer to be packed |
packList | list of indices to pack |
int geos::ElementRegionManager::packUpDownMaps | ( | buffer_unit_type *& | buffer, |
ElementViewAccessor< arrayView1d< localIndex > > const & | packList | ||
) | const |
Pack element-to-node and element-to-face maps.
buffer | pointer to the buffer to be packed |
packList | list of indices to pack |
|
inline |
Computes the pack size of the specific elements in the @ packList.
packList | The element we want packed. |
Definition at line 153 of file ObjectManagerBase.hpp.
int geos::ElementRegionManager::packUpDownMapsSize | ( | ElementReferenceAccessor< array1d< localIndex > > const & | packList | ) | const |
Get the buffer size needed to pack element-to-node and element-to-face maps.
packList | list of indices to pack |
int geos::ElementRegionManager::packUpDownMapsSize | ( | ElementViewAccessor< arrayView1d< localIndex > > const & | packList | ) | const |
Get the buffer size needed to pack element-to-node and element-to-face maps.
packList | list of indices to pack |
void geos::ElementRegionManager::resize | ( | integer_array const & | numElements, |
string_array const & | regionNames, | ||
string_array const & | elementTypes | ||
) |
Set the number of elements for a set of element regions.
numElements | list of the new element numbers |
regionNames | list of the element region names |
elementTypes | list of the element types |
virtual void geos::dataRepository::Group::resize |
Resize the group and all contained wrappers that resize with parent.
newSize | the new size of the group |
|
overridevirtual |
Inform the schema generator of any deviations between the xml and GEOS data structures.
schemaRoot | XML node corresponding to the root |
schemaParent | XML node for the parent node |
documentationType | type of XML schema generated |
Reimplemented from geos::dataRepository::Group.
|
override |
Unpack a buffer.
[in,out] | buffer | the buffer to unpack |
[in,out] | packList | the list of indices that will be unpacked. |
[in] | recursive | whether or not to perform a recursive unpack. |
[in] | onDevice | whether to use device-based packing functions (buffer must be either pinned or a device pointer) |
[out] | events | a collection of events to poll for completion of async packing kernels ( device packing is incomplete until all events are finalized ) |
[in] | op | the operation to perform while unpacking |
This function takes a reference to a pointer to const buffer type, and unpacks data from that buffer into the current Group. If packList
is non-empty, then a check is made to ensure that the data that is unpacked matches packList
. If packList
is empty, the values of the indices that are unpacked are stored and returned in packList.
int geos::ElementRegionManager::unpack | ( | buffer_unit_type const *& | buffer, |
ElementReferenceAccessor< array1d< localIndex > > & | packList | ||
) |
Unpack a buffer.
buffer | pointer to the buffer to be unpacked |
packList | list of indices to unpack |
int geos::ElementRegionManager::unpack | ( | buffer_unit_type const *& | buffer, |
ElementViewAccessor< arrayView1d< localIndex > > & | packList | ||
) |
Unpack a buffer.
buffer | pointer to the buffer to be unpacked |
packList | list of indices to unpack |
int geos::ElementRegionManager::unpackFaceElementToFace | ( | buffer_unit_type const *& | buffer, |
ElementReferenceAccessor< localIndex_array > & | packList, | ||
bool const | overwriteMap | ||
) |
Unpack element-to-node and element-to-face maps.
buffer | pointer to the buffer to be unpacked |
packList | list of indices to pack |
overwriteMap | flag to indicate whether to overwrite the local map |
int geos::ElementRegionManager::unpackFracturedElements | ( | buffer_unit_type const *& | buffer, |
ElementReferenceAccessor< localIndex_array > & | packList, | ||
string const | fractureRegionName | ||
) |
Unpack set of fractured elements and map toEmbSurfaces to a buffer or get the buffer size.
buffer | pointer to the buffer to be packed |
packList | list of indices to pack |
fractureRegionName | name of the fracture region |
int geos::ElementRegionManager::unpackGlobalMaps | ( | buffer_unit_type const *& | buffer, |
ElementViewAccessor< ReferenceWrapper< localIndex_array > > & | packList | ||
) |
Unpack a buffer.
buffer | pointer to the buffer to be unpacked |
packList | list of indices to pack |
virtual localIndex geos::ObjectManagerBase::unpackGlobalMaps |
Unpacks the global maps from buffer
.
buffer | The buffer containing the packed data. |
packList | The (un)packed element. |
recursive | Boolean like integer for sub-groups unpacking. |
|
inline |
Unpacks the specific elements in the @ packList.
buffer | The buffer containing the packed data. |
packList | The (un)packed element. |
overwriteUpMaps | Clear the up maps provided. |
overwriteDownMaps | Clear the down maps provided. |
Definition at line 181 of file ObjectManagerBase.hpp.
int geos::ElementRegionManager::unpackUpDownMaps | ( | buffer_unit_type const *& | buffer, |
ElementReferenceAccessor< localIndex_array > & | packList, | ||
bool const | overwriteMap | ||
) |
Unpack element-to-node and element-to-face maps.
buffer | pointer to the buffer to be unpacked |
packList | list of indices to pack |
overwriteMap | flag to indicate whether to overwrite the local map |
|
staticconstexpr |
Limit on max number of nodes for each element
Definition at line 58 of file ElementRegionManager.hpp.