#include <EmbeddedSurfaceSubRegion.hpp>

Inheritance diagram for geos::EmbeddedSurfaceSubRegion:

[legend]

Classes
struct	viewKeyStruct
	Struct containing the keys to all embedded surface element views. More...

Public Types
using	FaceMapType = FixedOneToManyRelation
	Embedded surface element to faces map type.

Public Types inherited from geos::SurfaceElementSubRegion
using	NodeMapType = InterObjectRelation< ArrayOfArrays< localIndex > >
	Surface element to nodes map type.

using	EdgeMapType = InterObjectRelation< ArrayOfArrays< localIndex > >
	Surface element to edges map type.

Public Types inherited from geos::ObjectManagerBase
using	CatalogInterface = dataRepository::CatalogInterface< ObjectManagerBase, string const &, dataRepository::Group *const >
	Nested type for the `factory` pattern, defining the base class (ObjectManagerBase) and the builder arguments (string const &, dataRepository::Group * const) of the derived products.

Public Types inherited from geos::dataRepository::Group
using	subGroupMap = MappedVector< Group, Group *, keyType, indexType >
	The template specialization of MappedVector to use for the collection of sub-Group objects.

using	wrapperMap = MappedVector< WrapperBase, WrapperBase *, keyType, indexType >
	The template specialization of MappedVector to use for the collection wrappers objects.

using	CatalogInterface = dataRepository::CatalogInterface< Group, string const &, Group *const >
	Type alias for catalog interface used by this class. See CatalogInterface.

Public Member Functions
virtual void	setupRelatedObjectsInRelations (MeshLevel const &mesh) override
	Link the connectivity maps of the subregion to the managers storing the mesh information. More...

Constructor / Destructor
	EmbeddedSurfaceSubRegion (string const &name, dataRepository::Group *const parent)
	Constructor. More...

Geometry computation / Connectivity
virtual void	calculateElementGeometricQuantities (NodeManager const &nodeManager, FaceManager const &facemanager) override final
	Calculate the geometric quantities for each element in the subregion. More...

void	calculateElementGeometricQuantities (arrayView2d< real64 const > const intersectionPoints, localIndex k)
	Function to compute the geometric quantities of a specific embedded surface element. More...

bool	addNewEmbeddedSurface (localIndex const cellIndex, localIndex const regionIndex, localIndex const subRegionIndex, NodeManager const &nodeManager, EmbeddedSurfaceNodeManager &embSurfNodeManager, EdgeManager const &edgeManager, FixedOneToManyRelation const &cellToEdges, PlanarGeometricObject const *fracture)
	Function to add a new embedded surface element. More...

void	inheritGhostRank (array1d< array1d< arrayView1d< integer const > > > const &cellGhostRank)
	inherit ghost rank from cell elements. More...

real64	computeHeavisideFunction (ArraySlice< real64 const, 1, nodes::REFERENCE_POSITION_USD - 1 > const nodeCoord, localIndex const k) const
	Given the coordinates of a node, it computes the Heaviside function iside a cut element with respect to the fracture element. More...

virtual localIndex	packUpDownMapsSize (arrayView1d< localIndex const > const &packList) const override
	Computes the pack size of the specific elements in the @ packList. More...

virtual localIndex	packUpDownMaps (buffer_unit_type *&buffer, arrayView1d< localIndex const > const &packList) const override
	Packs the specific elements in the @ packList. More...

virtual localIndex	unpackUpDownMaps (buffer_unit_type const *&buffer, array1d< localIndex > &packList, bool const overwriteUpMaps, bool const overwriteDownMaps) override
	Unpacks the specific elements in the @ packList. More...

Properties Getters
Getters to embedded surface elements properties.
localIndex &	numOfJumpEnrichments ()
	Get number of jump enrichments. More...

localIndex const &	numOfJumpEnrichments () const
	Get number of jump enrichments. More...

string const &	getFractureName (localIndex k) const
	Get the name of the bounding plate that was used to generate fracture element k. More...

arrayView1d< real64 >	getConnectivityIndex ()
	Get the connectivity index of the embedded surface element. More...

arrayView1d< real64 const >	getConnectivityIndex () const
	Get the connectivity index of the embedded surface element. More...

std::vector< struct surfaceWithGhostNodes >	surfaceWithGhostNodes ()
	accessor to the m_surfaceWithGhostNodes list More...

Public Member Functions inherited from geos::SurfaceElementSubRegion
	SurfaceElementSubRegion (string const &name, dataRepository::Group *const parent)
	Constructor. More...

virtual	~SurfaceElementSubRegion () override
	Destructor.

void	calculateElementCenters (arrayView2d< real64 const, nodes::REFERENCE_POSITION_USD > const &X) const
	Compute the center of each element in the subregion. More...

NodeMapType const &	nodeList () const
	Get the face element to nodes map. More...

NodeMapType &	nodeList ()
	Get the face element to nodes map. More...

localIndex &	nodeList (localIndex const k, localIndex a)
	Get the local index of the a-th node of the k-th element. More...

localIndex const &	nodeList (localIndex const k, localIndex a) const
	Get the local index of the a-th node of the k-th element. More...

EdgeMapType const &	edgeList () const
	Get the surface element to edges map. More...

EdgeMapType &	edgeList ()
	Get the surface element to edges map. More...

localIndex	numNodesPerElement (localIndex const k) const final
	Get the number of nodes per element. More...

OrderedVariableToManyElementRelation &	getToCellRelation ()
	Get the surface element to cells map. More...

OrderedVariableToManyElementRelation const &	getToCellRelation () const
	Get the surface element to cells map. More...

localIndex const &	numNodesPerElement () const
	Get the number of nodes per element. More...

virtual localIndex	numNodesPerElement (localIndex const k) const
	Get the number of nodes per element. More...

arrayView1d< real64 >	getElementAperture ()
	Get face element aperture. More...

arrayView1d< real64 const >	getElementAperture () const
	Get face element aperture. More...

arrayView1d< real64 >	getElementArea ()
	Get face element surface area. More...

arrayView1d< real64 const >	getElementArea () const
	Get face element surface area. More...

arrayView2d< real64 const >	getNormalVector () const
	Const accessor to the normal vectors. More...

arrayView2d< real64 >	getNormalVector ()
	Non const accessor to the normal vectors. More...

arraySlice1d< real64 const >	getNormalVector (localIndex k) const
	Get normal vector of a specific surface element. More...

arrayView2d< real64 const >	getTangentVector1 () const
	Get an array of the first tangent vector of the surface elements. More...

arrayView2d< real64 >	getTangentVector1 ()
	Get an array of the first tangent vector of the surface elements. More...

arraySlice1d< real64 const >	getTangentVector1 (localIndex const k) const
	Get the first tangent vector of a specific surface element. More...

arrayView2d< real64 const >	getTangentVector2 () const
	Get an array of the second tangent vector of the surface elements. More...

arrayView2d< real64 >	getTangentVector2 ()
	Get an array of the first tangent vector of the surface elements. More...

arraySlice1d< real64 const >	getTangentVector2 (localIndex const k) const
	Get the second tangent vector of a specific surface element. More...

Public Member Functions inherited from geos::ElementSubRegionBase
	ElementSubRegionBase (string const &name, dataRepository::Group *const parent)
	Constructor for this class. More...

	~ElementSubRegionBase ()
	Destructor.

virtual void	fixUpDownMaps (bool const clearIfUnmapped)
	Call ObjectManagerBase::fixUpDownMaps for the connectivity maps needed by the derived class (i.e., element-to-node map, element-to-face map, etc) More...

virtual void	resizePerElementValues (localIndex const numNodesPerElement, localIndex const numEdgesPerElement, localIndex const numFacesPerElement)
	Set all "perElement" values for this subregion. More...

localIndex const &	numNodesPerElement () const
	Get the number of nodes per element. More...

localIndex const &	numFacesPerElement () const
	Get the number of faces per element. More...

localIndex const &	numEdgesPerElement () const
	Gets the number of edges per element. More...

arrayView2d< real64 const >	getElementCenter () const
	Get the center of each element in this subregion. More...

array2d< real64 > &	getElementCenter ()
	Get the center of each element in this subregion. More...

arrayView1d< real64 const >	getElementVolume () const
	Get the volume of each element in this subregion. More...

dataRepository::Group const &	getConstitutiveModels () const
	Get the group in which the constitutive models of this subregion are registered. More...

dataRepository::Group &	getConstitutiveModels ()
	Get the group in which the constitutive models of this subregion are registered. More...

template<typename T = constitutive::ConstitutiveBase>
T const &	getConstitutiveModel (string const &name) const
	Get a pointer to the constitutive model. More...

template<typename T = constitutive::ConstitutiveBase>
T &	getConstitutiveModel (string const &name)
	Get a pointer to the constitutive model. More...

ElementType	getElementType () const
	Get the type of element in this subregion. More...

void	setElementType (ElementType const elemType)
	Setter for m_elementType. More...

Public Member Functions inherited from geos::ObjectManagerBase
	ObjectManagerBase (string const &name, dataRepository::Group *const parent)
	Constructor. More...

	~ObjectManagerBase () override
	Destructor.

virtual localIndex	packSize (string_array const &wrapperNames, arrayView1d< localIndex const > const &packList, integer const recursive, bool onDevice, parallelDeviceEvents &events) const override
	Get the size required to pack a list of indices within a list of wrappers. More...

virtual localIndex	pack (buffer_unit_type *&buffer, string_array const &wrapperNames, arrayView1d< localIndex const > const &packList, integer const recursive, bool onDevice, parallelDeviceEvents &events) const override
	Pack a list of indices within a list of wrappers. More...

virtual localIndex	unpack (buffer_unit_type const *&buffer, arrayView1d< localIndex > &packList, integer const recursive, bool onDevice, parallelDeviceEvents &events, MPI_Op op=MPI_REPLACE) override
	Unpack a buffer. More...

template<bool DO_PACKING>
localIndex	packSets (buffer_unit_type *&buffer, arrayView1d< localIndex const > const &packList) const
	Packs the elements of each set that actually are in `packList`. More...

localIndex	unpackSets (buffer_unit_type const *&buffer)
	Unpack the content of `buffer` into the sets of the instance. More...

void	excludeWrappersFromPacking (std::set< string > const &wrapperNames)
	Registers wrappers that will be excluded from packing. More...

virtual localIndex	packGlobalMapsSize (arrayView1d< localIndex const > const &packList, integer const recursive) const
	Computes the pack size of the global maps elements in the @ packList. More...

virtual localIndex	packGlobalMaps (buffer_unit_type *&buffer, arrayView1d< localIndex const > const &packList, integer const recursive) const
	Packs the global maps elements in the @ packList. More...

void	setReceiveLists ()
	Clear and redefines the ghosts to receive.

virtual localIndex	unpackGlobalMaps (buffer_unit_type const *&buffer, localIndex_array &packList, integer const recursive)
	Unpacks the global maps from `buffer`. More...

localIndex	packParentChildMapsSize (arrayView1d< localIndex const > const &packList) const
	Computes the pack size of the parent/child relations in `packList`. More...

localIndex	packParentChildMaps (buffer_unit_type *&buffer, arrayView1d< localIndex const > const &packList) const
	Packs the parent/child relations in `packList`. More...

localIndex	unpackParentChildMaps (buffer_unit_type const *&buffer, localIndex_array &packList)
	Unacks the parent/child relations in `packList`. More...

void	moveSets (LvArray::MemorySpace const targetSpace)
	Manually move all sets to a memory space. More...

localIndex	resize (localIndex const newSize, const bool)
	Resize the group and all contained wrappers that resize with parent. More...

SortedArray< localIndex > &	createSet (const string &newSetName)
	Creates a new set. More...

void	constructSetFromSetAndMap (SortedArrayView< localIndex const > const &inputSet, const array2d< localIndex > &map, const string &setName)
	Builds a new set on this instance given another objects set and the map between them. More...

void	constructSetFromSetAndMap (SortedArrayView< localIndex const > const &inputSet, const array1d< localIndex_array > &map, const string &setName)
	Builds a new set on this instance given another objects set and the map between them. More...

void	constructSetFromSetAndMap (SortedArrayView< localIndex const > const &inputSet, ArrayOfArraysView< localIndex const > const &map, const string &setName)
	Builds a new set on this instance given another objects set and the map between them. More...

void	constructGlobalToLocalMap ()
	Constructs the global to local map.

array1d< globalIndex >	constructGlobalListOfBoundaryObjects () const
	Computes the (global) index list that are domain boundaries. More...

virtual ArrayOfSets< globalIndex >	extractMapFromObjectForAssignGlobalIndexNumbers (ObjectManagerBase const &nodeManager)
	Extract map from object and assign global indices. More...

void	setGhostRankForSenders (int const neighborRank)
	Defines `neighborRank` ownership for ghost objects. More...

localIndex	getNumberOfGhosts () const
	Get the number of ghost objects. More...

localIndex	getNumberOfLocalIndices () const
	Get the number of locally owned objects. More...

integer	splitObject (localIndex const indexToSplit, int const rank, localIndex &newIndex)
	Split object to deal with topology changes. More...

void	inheritGhostRankFromParent (std::set< localIndex > const &indices)
	sets the value of m_ghostRank to the value of the objects parent. More...

void	copyObject (localIndex const source, localIndex const destination)
	Copy object from `source` to @ destination. More...

void	eraseObject (std::set< localIndex > const &indicesToErase)
	Erase object from this object manager. More...

virtual void	setMaxGlobalIndex ()
	Computes the maximum global index allong all the MPI ranks.

virtual void	enforceStateFieldConsistencyPostTopologyChange (std::set< localIndex > const &targetIndices)
	Updates the child and target indices after a topology change. More...

template<typename FIELD_TRAIT >
dataRepository::Wrapper< typename FIELD_TRAIT::type > &	registerField (string const &nameOfRegisteringObject)
	Register field with this ObjectManagerBase using a `dataRepository::Wrapper`. More...

template<typename FIELD_TRAIT >
dataRepository::Wrapper< typename FIELD_TRAIT::type > &	registerField (FIELD_TRAIT const &fieldTrait, typename FIELD_TRAIT::type *newObject)
	Helper function to register fields. More...

template<typename FIELD_TRAIT0 , typename FIELD_TRAIT1 , typename ... FIELD_TRAITS>
void	registerField (string const &nameOfRegisteringObject)
	Register a collection of fields with this ObjectManagerBase using a dataRepository::Wrapper. More...

template<typename FIELD_TRAIT >
GEOS_DECLTYPE_AUTO_RETURN	getField () const
	Get a view to the field associated with a trait from this `ObjectManagerBase`. More...

template<typename FIELD_TRAIT >
GEOS_DECLTYPE_AUTO_RETURN	getField ()
	Get the field associated with a trait from this `ObjectManagerBase`. More...

template<typename FIELD_TRAIT >
bool	hasField () const
	Checks if a field has been registered. More...

virtual viewKeyStruct &	viewKeys ()
	Get the view keys for Group access. More...

virtual viewKeyStruct const &	viewKeys () const
	Get the view keys for Group access, const version. More...

virtual groupKeyStruct &	groupKeys ()
	Get the group keys for Group access. More...

virtual groupKeyStruct const &	groupKeys () const
	Get the group keys for Group access, const version. More...

Group &	sets ()
	Get the group holding the object sets. More...

Group const &	sets () const
	Get the group holding the object sets, const version. More...

SortedArray< localIndex > &	getSet (string const &setName)
	Get a set by name. More...

SortedArrayView< localIndex const >	getSet (string const &setName) const
	Get a set by name, const version. More...

SortedArray< localIndex > &	externalSet ()
	Get the external set. More...

SortedArrayView< localIndex const >	externalSet () const
	Get the external set, const version. More...

void	updateGlobalToLocalMap (localIndex const lid)
	Updates (if needed) the global index for local index `lid`. More...

arrayView1d< globalIndex >	localToGlobalMap ()
	Get local to global map. More...

arrayView1d< globalIndex const >	localToGlobalMap () const
	Get local to global map, const version. More...

unordered_map< globalIndex, localIndex > const &	globalToLocalMap () const
	Get global to local map. More...

localIndex	globalToLocalMap (globalIndex const gid) const
	Retrieves the local index for given global index. More...

array1d< integer > const &	isExternal ()
	Get the locality information of the objects. More...

arrayView1d< integer const >	isExternal () const
	Get the locality information of the objects. More...

array1d< integer > const &	ghostRank ()
	Get the ghost information of each object. More...

arrayView1d< integer const >	ghostRank () const
	Get the ghost information of each object, const version. More...

NeighborData &	getNeighborData (int const rank)
	Get neighbor data for given `rank`. More...

NeighborData const &	getNeighborData (int const rank) const
	Get neighbor data for given `rank`, const version. More...

void	addNeighbor (int const rank)
	Add a neighbor for `rank`. More...

void	removeNeighbor (int const rank)
	Remove neighbor for `rank`. More...

globalIndex	localMaxGlobalIndex () const
	Get the local maximum global index on this rank. More...

globalIndex	maxGlobalIndex () const
	Get the maximum global index of all objects across all rank. See. More...

array1d< integer > &	getDomainBoundaryIndicator ()
	Get the domain boundary indicator. More...

arrayView1d< integer const >	getDomainBoundaryIndicator () const
	Get the domain boundary indicator. More...

Public Member Functions inherited from geos::dataRepository::Group
template<typename LOG_LEVEL_INFO >
std::enable_if_t< geos::is_log_level_info< LOG_LEVEL_INFO >, void >	addLogLevel ()
	Append a levelCondition and a log description to the description of the wrapped object given a log info struct. Must be called in constructor. More...

virtual bool	registerCallback (void *func, const std::type_info &funcType)
	Register a callback function on the group. More...

virtual void	reinit ()
	Performs re-initialization of certain variable depending on the solver being used.

	Group (string const &name, Group *const parent)
	Constructor. More...

	Group (string const &name, conduit::Node &rootNode)
	Constructor. More...

	Group (Group &&source)=default
	Move constructor. More...

virtual	~Group ()
	Destructor, deletes all Groups and Wrappers owned by this Group.

	Group ()=delete
	Deleted default constructor.

	Group (Group const &)=delete
	Deleted copy constructor.

Group &	operator= (Group const &)=delete
	Deleted copy assignment operator. More...

Group &	operator= (Group &&)=delete
	Deleted move assignment operator. More...

void	printDataHierarchy (integer indent=0) const
	Prints the data hierarchy recursively. More...

string	dumpInputOptions () const

string	dumpSubGroupsNames () const

string	dumpWrappersNames () const

template<typename T = Group>
T &	registerGroup (string const &name, std::unique_ptr< T > newObject)
	Register a new Group as a sub-group of current Group. More...

template<typename T = Group>
T &	registerGroup (string const &name, T *newObject)
	Register a new Group as a sub-group of current Group. More...

template<typename T = Group>
T &	registerGroup (string const &name)
	Register a new Group as a sub-group of current Group. More...

template<typename T = Group>
T &	registerGroup (subGroupMap::KeyIndex const &keyIndex)
	Register a new Group as a sub-group of current Group. More...

template<typename T = Group, typename TBASE = Group>
T &	registerGroup (string const &name, string const &catalogName)
	Register a new Group as a sub-group of current Group. More...

void	deregisterGroup (string const &name)
	Removes a child group from this group. More...

virtual Group *	createChild (string const &childKey, string const &childName)
	Creates a new sub-Group using the ObjectCatalog functionality. More...

template<typename T = Group, typename KEY = void>
T *	getGroupPointer (KEY const &key)
	Return a pointer to a sub-group of the current Group. More...

template<typename T = Group, typename KEY = void>
T const *	getGroupPointer (KEY const &key) const
	Return a pointer to a sub-group of the current Group. More...

template<typename T = Group, typename KEY = void>
T &	getGroup (KEY const &key)
	Return a reference to a sub-group of the current Group. More...

template<typename T = Group, typename KEY = void>
T const &	getGroup (KEY const &key) const
	Return a reference to a sub-group of the current Group. More...

template<typename T = Group>
T &	getGroupByPath (string const &path)
	Retrieve a group from the hierarchy using a path. More...

template<typename T = Group>
T const &	getGroupByPath (string const &path) const
	Retrieve a group from the hierarchy using a path. More...

subGroupMap &	getSubGroups ()
	Get the subgroups object. More...

subGroupMap const &	getSubGroups () const
	Get the subgroups object. More...

localIndex	numSubGroups () const
	return the number of sub groups in this Group More...

std::vector< string >	getSubGroupsNames () const

template<typename T = Group>
bool	hasGroup (string const &name) const
	Check whether a sub-group exists. More...

template<typename T >
bool	hasSubGroupOfType () const
	Check whether a sub-group exists by type. More...

template<typename GROUPTYPE = Group, typename ... GROUPTYPES, typename LAMBDA >
void	forSubGroups (LAMBDA &&lambda)
	Apply the given functor to subgroups that can be casted to one of specified types. More...

template<typename GROUPTYPE = Group, typename ... GROUPTYPES, typename LAMBDA >
void	forSubGroups (LAMBDA &&lambda) const
	Apply the given functor to subgroups that can be casted to one of specified types. More...

template<typename GROUPTYPE = Group, typename ... GROUPTYPES, typename LAMBDA >
void	forSubGroupsIndex (LAMBDA &&lambda)
	Apply the given functor to subgroups that can be casted to one of specified types. More...

template<typename GROUPTYPE = Group, typename ... GROUPTYPES, typename LAMBDA >
void	forSubGroupsIndex (LAMBDA &&lambda) const
	Apply the given functor to subgroups that can be casted to one of specified types. More...

template<typename GROUPTYPE = Group, typename ... GROUPTYPES, typename LOOKUP_CONTAINER , typename LAMBDA >
void	forSubGroups (LOOKUP_CONTAINER const &subGroupKeys, LAMBDA &&lambda)
	Apply the given functor to subgroups that can be casted to one of specified types. More...

template<typename GROUPTYPE = Group, typename ... GROUPTYPES, typename LOOKUP_CONTAINER , typename LAMBDA >
void	forSubGroups (LOOKUP_CONTAINER const &subGroupKeys, LAMBDA &&lambda) const
	Apply the given functor to subgroups that can be casted to one of specified types. More...

template<typename LAMBDA >
void	forWrappers (LAMBDA &&lambda)
	Apply the given functor to wrappers. More...

template<typename LAMBDA >
void	forWrappers (LAMBDA &&lambda) const
	Apply the given functor to wrappers. More...

template<typename TYPE , typename ... TYPES, typename LAMBDA >
void	forWrappers (LAMBDA &&lambda)
	Apply the given functor to wrappers that can be cast to one of specified types. More...

template<typename TYPE , typename ... TYPES, typename LAMBDA >
void	forWrappers (LAMBDA &&lambda) const
	Apply the given functor to wrappers that can be cast to one of specified types. More...

virtual void	initialize_postMeshGeneration ()
	initialization post generation of the mesh.

void	initialize ()
	Run initialization functions on this and all subgroups. More...

virtual void	initializationOrder (string_array &order)
	Sets the initialization order for sub-Groups. More...

void	initializePostInitialConditions ()
	Initialization routine to be called after calling ApplyInitialConditions(). More...

void	postRestartInitializationRecursive ()
	Initialization routine to be called after calling reading a restart file. More...

void	processInputFileRecursive (xmlWrapper::xmlDocument &xmlDocument, xmlWrapper::xmlNode &targetNode)
	Recursively read values using ProcessInputFile() from the input file and put them into the wrapped values for this group. Also add the includes content to the xmlDocument when `Include` nodes are encountered. More...

void	processInputFileRecursive (xmlWrapper::xmlDocument &xmlDocument, xmlWrapper::xmlNode &targetNode, xmlWrapper::xmlNodePos const &nodePos)
	Same as processInputFileRecursive(xmlWrapper::xmlDocument &, xmlWrapper::xmlNode &) but allow to reuse an existing xmlNodePos. More...

void	postInputInitializationRecursive ()
	Recursively call postInputInitialization() to apply post processing after reading input values.

template<typename T , typename TBASE = T>
Wrapper< TBASE > &	registerWrapper (string const &name, wrapperMap::KeyIndex::index_type *const rkey=nullptr)
	Create and register a Wrapper around a new object. More...

template<typename T , typename TBASE = T>
Wrapper< TBASE > &	registerWrapper (Group::wrapperMap::KeyIndex const &viewKey)
	Create and register a Wrapper around a new object. More...

template<typename T >
Wrapper< T > &	registerWrapper (string const &name, std::unique_ptr< T > newObject)
	Register a Wrapper around a given object and take ownership. More...

template<typename T >
Wrapper< T > &	registerWrapper (string const &name, T *newObject)
	Register a Wrapper around an existing object, does not take ownership of the object. More...

WrapperBase &	registerWrapper (std::unique_ptr< WrapperBase > wrapper)
	Register and take ownership of an existing Wrapper. More...

void	deregisterWrapper (string const &name)
	Removes a Wrapper from this group. More...

void	generateDataStructureSkeleton (integer const level)
	Build a complete datastructure for schema generation. More...

virtual void	expandObjectCatalogs ()
	Expand any catalogs in the data structure.

virtual void	setSchemaDeviations (xmlWrapper::xmlNode schemaRoot, xmlWrapper::xmlNode schemaParent, integer documentationType)
	Inform the schema generator of any deviations between the xml and GEOS data structures. More...

virtual void	registerDataOnMeshRecursive (Group &meshBodies)
	Calls RegisterDataOnMesh() recursively. More...

virtual void	registerDataOnMesh (Group &meshBodies)
	Register data on mesh entities. More...

virtual localIndex	packSize (string_array const &wrapperNames, integer const recursive, bool onDevice, parallelDeviceEvents &events) const
	Get the size required to pack a list of wrappers. More...

localIndex	packSize (arrayView1d< localIndex const > const &packList, integer const recursive, bool onDevice, parallelDeviceEvents &events) const
	Get the size required to pack a list of indices for all registered wrappers. More...

virtual localIndex	pack (buffer_unit_type *&buffer, string_array const &wrapperNames, integer const recursive, bool onDevice, parallelDeviceEvents &events) const
	Pack a list of wrappers to a buffer. More...

localIndex	pack (buffer_unit_type *&buffer, arrayView1d< localIndex const > const &packList, integer const recursive, bool onDevice, parallelDeviceEvents &events) const
	Pack a list of indices for all registered wrappers. More...

template<typename KEY >
WrapperBase const &	getWrapperBase (KEY const &key) const
	Return a reference to a WrapperBase stored in this group. More...

template<typename KEY >
WrapperBase &	getWrapperBase (KEY const &key)
	Return a reference to a WrapperBase stored in this group. More...

indexType	getWrapperIndex (string const &name) const

wrapperMap const &	wrappers () const
	Get access to the internal wrapper storage. More...

wrapperMap &	wrappers ()
	Get access to the internal wrapper storage. More...

indexType	numWrappers () const
	Return the number of wrappers. More...

std::vector< string >	getWrappersNames () const

template<typename LOOKUP_TYPE >
bool	hasWrapper (LOOKUP_TYPE const &lookup) const
	Check if a wrapper exists. More...

template<typename T , typename LOOKUP_TYPE >
Wrapper< T > const &	getWrapper (LOOKUP_TYPE const &index) const
	Retrieve a Wrapper stored in this group. More...

template<typename T , typename LOOKUP_TYPE >
Wrapper< T > &	getWrapper (LOOKUP_TYPE const &index)
	Retrieve a Wrapper stored in this group. More...

template<typename T , typename LOOKUP_TYPE >
Wrapper< T > const *	getWrapperPointer (LOOKUP_TYPE const &index) const
	Retrieve a Wrapper stored in this group. More...

template<typename T , typename LOOKUP_TYPE >
Wrapper< T > *	getWrapperPointer (LOOKUP_TYPE const &index)
	Retrieve a Wrapper stored in this group. More...

template<typename T , typename LOOKUP_TYPE >
GEOS_DECLTYPE_AUTO_RETURN	getReference (LOOKUP_TYPE const &lookup) const
	Look up a wrapper and get reference to wrapped object. More...

template<typename T , typename LOOKUP_TYPE >
T &	getReference (LOOKUP_TYPE const &lookup)
	Look up a wrapper and get reference to wrapped object. More...

virtual void	resize (localIndex const newSize)
	Resize the group and all contained wrappers that resize with parent. More...

virtual void	reserve (indexType const newsize)
	Set the new capacity and reserve it in all wrappers that resize with parent. More...

localIndex	capacity () const
	Get the "capacity" of the group, which determines the capacity of resizable wrappers. More...

localIndex	size () const
	Get the "size" of the group, which determines the number of elements in resizable wrappers. More...

string const &	getName () const
	Get group name. More...

string	getPath () const
	Return the path of this Group in the data repository. Starts with '/' followed by the hierarchy of the children of the "Problem" in which the Group is. More...

DataContext const &	getDataContext () const

template<typename KEY >
DataContext const &	getWrapperDataContext (KEY key) const

Group &	getParent ()
	Access the group's parent. More...

Group const &	getParent () const
	Access the group's parent. More...

bool	hasParent () const

localIndex	getIndexInParent () const
	Get the group's index within its parent group. More...

localIndex	getSubGroupIndex (keyType const &key) const
	Get the index of a sub-Group within this group. More...

int	sizedFromParent () const
	Check whether this Group is resized when its parent is resized. More...

Group &	setSizedFromParent (int val)
	Set whether this wrapper is resized when its parent is resized. More...

RestartFlags	getRestartFlags () const
	Get flags that control restart output of this group. More...

void	setRestartFlags (RestartFlags flags)
	Set flags that control restart output of this group. More...

InputFlags	getInputFlags () const
	Get input flags for schema generation. More...

void	setInputFlags (InputFlags flags)
	Set input flags for schema generation. More...

conduit::Node &	getConduitNode ()
	Return the Conduit node object associated with this group. More...

conduit::Node const &	getConduitNode () const
	Return the Conduit node object associated with this group. More...

void	prepareToWrite ()
	Register the group and its wrappers with Conduit.

void	finishWriting ()
	Write the group and its wrappers into Conduit.

void	loadFromConduit ()
	Read the group and its wrappers from Conduit.

void	enableLogLevelInput ()

void	setLogLevel (integer const logLevel)
	Set verbosity level. More...

integer	getLogLevel () const

Public Attributes
geos::EmbeddedSurfaceSubRegion::viewKeyStruct	viewKeys
	viewKey struct for the EmbeddedSurfaceSubRegion class

Public Attributes inherited from geos::ObjectManagerBase
struct geos::ObjectManagerBase::viewKeyStruct	m_ObjectManagerBaseViewKeys
	viewKey struct for the ObjectManagerBase class

struct geos::ObjectManagerBase::groupKeyStruct	m_ObjectManagerBaseGroupKeys
	groupKey struct for the ObjectManagerBase class

Static factory catalog functions
static string	catalogName ()
	Get catalog name. More...

virtual string	getCatalogName () const override
	Get catalog name. More...

Additional Inherited Members
Static Public Member Functions inherited from geos::SurfaceElementSubRegion
static string	catalogName ()
	Get catalog name. More...

Static Public Member Functions inherited from geos::ObjectManagerBase
template<typename TYPE_RELATION >
static void	fixUpDownMaps (TYPE_RELATION &relation, map< localIndex, array1d< globalIndex > > &unmappedIndices, bool const clearIfUnmapped)
	Fixing the up/down maps by mapping the unmapped indices. More...

template<typename TYPE_RELATION >
static void	fixUpDownMaps (TYPE_RELATION &relation, map< localIndex, SortedArray< globalIndex > > &unmappedIndices, bool const clearIfUnmapped)
	Fixing the up/down maps by mapping the unmapped indices. More...

static void	fixUpDownMaps (ArrayOfSets< localIndex > &relation, unordered_map< globalIndex, localIndex > const &globalToLocal, map< localIndex, SortedArray< globalIndex > > &unmappedIndices, bool const clearIfUnmapped)
	Fixing the up/down maps by mapping the unmapped indices. More...

static void	cleanUpMap (std::set< localIndex > const &targetIndices, array1d< SortedArray< localIndex > > &upmap, arrayView2d< localIndex const > const &downmap)
	Removes from the list of arrays of `upmap` all the elements for which the "mirror target array" of `downmap` does not contain the proper target index. More...

static void	cleanUpMap (std::set< localIndex > const &targetIndices, ArrayOfSetsView< localIndex > const &upmap, arrayView2d< localIndex const > const &downmap)
	Removes from the list of sets of `upmap` all the elements for which the "mirror target array" of `downmap` does not contain the proper target index. More...

static void	cleanUpMap (std::set< localIndex > const &targetIndices, array1d< SortedArray< localIndex > > &upmap, arrayView1d< arrayView1d< localIndex const > const > const &downmap)
	Removes from the list of arrays of `upmap` all the elements for which the "mirror target array" of `downmap` does not contain the proper target index. More...

static void	cleanUpMap (std::set< localIndex > const &targetIndices, ArrayOfSetsView< localIndex > const &upmap, arrayView1d< arrayView1d< localIndex const > const > const &downmap)
	Removes from the list of sets of `upmap` all the elements for which the "mirror target array" of `downmap` does not contain the proper target index. More...

static void	cleanUpMap (std::set< localIndex > const &targetIndices, ArrayOfSetsView< localIndex > const &upmap, ArrayOfArraysView< localIndex const > const &downmap)
	Removes from the list of sets of `upmap` all the elements for which the "mirror target array" of `downmap` does not contain the proper target index. More...

static localIndex	getParentRecursive (arraySlice1d< localIndex const > const &parentIndices, localIndex const lookup)
	Get the upmost parent. More...

static CatalogInterface::CatalogType &	getCatalog ()
	Acessing the unique instance of this catalog. More...

Static Public Member Functions inherited from geos::dataRepository::Group
template<typename T0 , typename T1 , typename ... CASTTYPES, typename CONTAINERTYPE , typename LAMBDA >
static bool	applyLambdaToContainer (CONTAINERTYPE &container, LAMBDA &&lambda)
	Apply a given functor to a container if the container can be cast to one of the specified types. More...

static CatalogInterface::CatalogType &	getCatalog ()
	Get the singleton catalog for this Group. More...

Protected Member Functions inherited from geos::ElementSubRegionBase
template<class NODE_MAP >
void	calculateElementCenters (NODE_MAP const &toNodesRelation, arrayView2d< real64 const, nodes::REFERENCE_POSITION_USD > const &X) const
	Compute the center of each element in the subregion. More...

Protected Member Functions inherited from geos::dataRepository::Group
virtual void	postInputInitialization ()

virtual void	initializePreSubGroups ()
	Called by Initialize() prior to initializing sub-Groups.

virtual void	initializePostSubGroups ()
	Called by Initialize() after to initializing sub-Groups.

virtual void	initializePostInitialConditionsPreSubGroups ()
	Called by InitializePostInitialConditions() prior to initializing sub-Groups.

virtual void	initializePostInitialConditionsPostSubGroups ()
	Called by InitializePostInitialConditions() after to initializing sub-Groups.

virtual void	postRestartInitialization ()
	Performs initialization required after reading from a restart file.

Protected Attributes inherited from geos::SurfaceElementSubRegion
OrderedVariableToManyElementRelation	m_2dElemToElems
	Map between the surface elements and the cells.

map< localIndex, array1d< globalIndex > >	m_unmappedGlobalIndicesInToNodes
	Unmapped surface elements to nodes map.

NodeMapType	m_toNodesRelation
	list of nodes

EdgeMapType	m_toEdgesRelation
	list of edges

array1d< real64 >	m_elementAperture
	Member level field for the element center.

array1d< real64 >	m_elementArea
	Member level field for the element center.

array2d< real64 >	m_normalVector
	Normal vector to the surface element.

array2d< real64 >	m_tangentVector1
	Unit vector indicating the first tangential direction.

array2d< real64 >	m_tangentVector2
	Unit vector indicating the second tangential direction.

Protected Attributes inherited from geos::ElementSubRegionBase
localIndex	m_numNodesPerElement
	Number of nodes per element in this subregion.

localIndex	m_numEdgesPerElement
	Number of edges per element in this subregion.

localIndex	m_numFacesPerElement
	Number of faces per element in this subregion.

array2d< real64 >	m_elementCenter
	Member level field for the element center.

array1d< real64 >	m_elementVolume
	Member level field for the element volume.

ElementType	m_elementType
	Type of element in this subregion.

Protected Attributes inherited from geos::ObjectManagerBase
Group	m_sets
	Group that holds object sets.

std::set< string >	m_packingExclusionList
	Names of the wrappers that should not be packed.

Group	m_neighborGroup
	Group that holds all the NeighborData objects.

array1d< globalIndex >	m_localToGlobalMap
	Contains the global index of each object.

unordered_map< globalIndex, localIndex >	m_globalToLocalMap
	Map from object global index to the local index.

array1d< integer >	m_isExternal
	Array that holds if an object is external.

array1d< integer >	m_domainBoundaryIndicator
	Domain boundary indicator: 1 means the "index" is on the boundary.

array1d< integer >	m_ghostRank
	Array that holds the ghost information about each object. More...

unordered_map< int, NeighborData >	m_neighborData
	A map from rank to the associated NeighborData object.

real64	m_overAllocationFactor = 1.1
	Factor by which to overallocate when adding objects.

globalIndex	m_maxGlobalIndex = -1
	The maximum global index of all objects across all rank.

globalIndex	m_localMaxGlobalIndex = -1
	The maximum global index of any object of all objects on this rank.

Detailed Description

The EmbeddedSurfaceSubRegion class contains the functionality to support the concept of an embedded surface element. It consists of a 2D surface that cuts a 3D matrix cell.

Definition at line 68 of file EmbeddedSurfaceSubRegion.hpp.

Constructor & Destructor Documentation

◆ EmbeddedSurfaceSubRegion()

geos::EmbeddedSurfaceSubRegion::EmbeddedSurfaceSubRegion	(	string const &	name,
		dataRepository::Group *const	parent
	)

Constructor.

Parameters

name	the group name
parent	the parent group

Member Function Documentation

◆ addNewEmbeddedSurface()

bool geos::EmbeddedSurfaceSubRegion::addNewEmbeddedSurface	(	localIndex const	cellIndex,
		localIndex const	regionIndex,
		localIndex const	subRegionIndex,
		NodeManager const &	nodeManager,
		EmbeddedSurfaceNodeManager &	embSurfNodeManager,
		EdgeManager const &	edgeManager,
		FixedOneToManyRelation const &	cellToEdges,
		PlanarGeometricObject const *	fracture
	)

Function to add a new embedded surface element.

Parameters

cellIndex	cell element index
regionIndex	cell element region index
subRegionIndex	cell element subregion index
nodeManager	the nodemanager group
embSurfNodeManager	the embSurfNodeManager group
edgeManager	the edgemanager group
cellToEdges	cellElement to edges map
fracture	pointer to the bounded plane which is defining the embedded surface element

Returns: boolean defining whether the embedded element was added or not

◆ calculateElementGeometricQuantities() [1/2]

void geos::EmbeddedSurfaceSubRegion::calculateElementGeometricQuantities	(	arrayView2d< real64 const > const	intersectionPoints,
		localIndex	k
	)

Function to compute the geometric quantities of a specific embedded surface element.

Parameters

intersectionPoints	array containing the nodes defining the embedded surface elements
k	index of the embedded surface element

◆ calculateElementGeometricQuantities() [2/2]

virtual void geos::EmbeddedSurfaceSubRegion::calculateElementGeometricQuantities	(	NodeManager const &	nodeManager,
		FaceManager const &	faceManager
	)

finaloverridevirtual

Calculate the geometric quantities for each element in the subregion.

Parameters

[in]	nodeManager	the nodeManager (for geometrical info and connectivity involving nodes)
[in]	faceManager	the faceManager (for geometrical info and connectivity involving faces)

Implements geos::ElementSubRegionBase.

◆ catalogName()

static string geos::EmbeddedSurfaceSubRegion::catalogName ( )

inlinestatic

Get catalog name.

Returns: the catalog name

Definition at line 84 of file EmbeddedSurfaceSubRegion.hpp.

◆ computeHeavisideFunction()

real64 geos::EmbeddedSurfaceSubRegion::computeHeavisideFunction	(	ArraySlice< real64 const, 1, nodes::REFERENCE_POSITION_USD - 1 > const	nodeCoord,
		localIndex const	k
	)		const

Given the coordinates of a node, it computes the Heaviside function iside a cut element with respect to the fracture element.

Parameters

nodeCoord	coordinate of the node
k	embedded surface cell index

Returns: value of the Heaviside

◆ getCatalogName()

virtual string geos::EmbeddedSurfaceSubRegion::getCatalogName ( ) const

inlineoverridevirtual

Get catalog name.

Returns: the catalog name

Reimplemented from geos::SurfaceElementSubRegion.

Definition at line 91 of file EmbeddedSurfaceSubRegion.hpp.

◆ getConnectivityIndex() [1/2]

arrayView1d< real64 > geos::EmbeddedSurfaceSubRegion::getConnectivityIndex ( )

inline

Get the connectivity index of the embedded surface element.

Returns: the connectivity index

Definition at line 222 of file EmbeddedSurfaceSubRegion.hpp.

◆ getConnectivityIndex() [2/2]

arrayView1d< real64 const > geos::EmbeddedSurfaceSubRegion::getConnectivityIndex ( ) const

inline

Get the connectivity index of the embedded surface element.

Returns: the connectivity index

Definition at line 227 of file EmbeddedSurfaceSubRegion.hpp.

◆ getFractureName()

string const& geos::EmbeddedSurfaceSubRegion::getFractureName ( localIndex k ) const

inline

Get the name of the bounding plate that was used to generate fracture element k.

Parameters

k	the index of the embedded surface element

Returns: the name of the bounded plane, the element was generated from

Definition at line 216 of file EmbeddedSurfaceSubRegion.hpp.

◆ inheritGhostRank()

void geos::EmbeddedSurfaceSubRegion::inheritGhostRank ( array1d< array1d< arrayView1d< integer const > > > const & cellGhostRank )

inherit ghost rank from cell elements.

Parameters

cellGhostRank cell element ghost ranks

◆ numOfJumpEnrichments() [1/2]

localIndex& geos::EmbeddedSurfaceSubRegion::numOfJumpEnrichments ( )

inline

Get number of jump enrichments.

Returns: a reference to the number of jump enrichments

Definition at line 203 of file EmbeddedSurfaceSubRegion.hpp.

◆ numOfJumpEnrichments() [2/2]

localIndex const& geos::EmbeddedSurfaceSubRegion::numOfJumpEnrichments ( ) const

inline

Get number of jump enrichments.

Returns: a constant reference to the number of jump enrichments

Definition at line 209 of file EmbeddedSurfaceSubRegion.hpp.

◆ packUpDownMaps()

virtual localIndex geos::EmbeddedSurfaceSubRegion::packUpDownMaps	(	buffer_unit_type *&	buffer,
		arrayView1d< localIndex const > const &	packList
	)		const

overridevirtual

Packs the specific elements in the @ packList.

Parameters

buffer	The buffer that will receive the packed data.
packList	The element we want packed.

Returns: The packed size.

Reimplemented from geos::ObjectManagerBase.

◆ packUpDownMapsSize()

virtual localIndex geos::EmbeddedSurfaceSubRegion::packUpDownMapsSize ( arrayView1d< localIndex const > const & packList ) const

overridevirtual

Computes the pack size of the specific elements in the @ packList.

Parameters

packList The element we want packed.

Returns: The packed size.

Reimplemented from geos::ObjectManagerBase.

◆ setupRelatedObjectsInRelations()

virtual void geos::EmbeddedSurfaceSubRegion::setupRelatedObjectsInRelations ( MeshLevel const & mesh )

overridevirtual

Link the connectivity maps of the subregion to the managers storing the mesh information.

Parameters

[in] mesh the meshLevel object (single level only)

In the derived classes, this function is used to passe a pointer to the nodeManager, faceManager, and (if needed) edgeManager to, respectively, the node list, face list, and edge list of the subregion.

Implements geos::ElementSubRegionBase.

◆ surfaceWithGhostNodes()

std::vector< struct surfaceWithGhostNodes > geos::EmbeddedSurfaceSubRegion::surfaceWithGhostNodes ( )

inline

accessor to the m_surfaceWithGhostNodes list

Returns: the list of surfaces with at least one ghost node.

Definition at line 233 of file EmbeddedSurfaceSubRegion.hpp.

◆ unpackUpDownMaps()

virtual localIndex geos::EmbeddedSurfaceSubRegion::unpackUpDownMaps	(	buffer_unit_type const *&	buffer,
		array1d< localIndex > &	packList,
		bool const	overwriteUpMaps,
		bool const	overwriteDownMaps
	)

overridevirtual

Unpacks the specific elements in the @ packList.

Parameters

buffer	The buffer containing the packed data.
packList	The (un)packed element.
overwriteUpMaps	Clear the up maps provided.
overwriteDownMaps	Clear the down maps provided.

Returns: The packed size.

Reimplemented from geos::ObjectManagerBase.

The documentation for this class was generated from the following file:

coreComponents/mesh/EmbeddedSurfaceSubRegion.hpp

Classes

Public Types

Public Member Functions

Public Attributes

Static factory catalog functions

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

◆ EmbeddedSurfaceSubRegion()

Member Function Documentation

◆ addNewEmbeddedSurface()

◆ calculateElementGeometricQuantities() [1/2]

◆ calculateElementGeometricQuantities() [2/2]

◆ catalogName()

◆ computeHeavisideFunction()

◆ getCatalogName()

◆ getConnectivityIndex() [1/2]

◆ getConnectivityIndex() [2/2]

◆ getFractureName()

◆ inheritGhostRank()

◆ numOfJumpEnrichments() [1/2]

◆ numOfJumpEnrichments() [2/2]

◆ packUpDownMaps()

◆ packUpDownMapsSize()

◆ setupRelatedObjectsInRelations()

◆ surfaceWithGhostNodes()

◆ unpackUpDownMaps()