GEOS Python Packages
  • HDF5 Wrapper
    • Usage
    • API
      • hdf5_wrapper
        • hdf5_wrapper.close()
        • hdf5_wrapper.copy()
        • hdf5_wrapper.get_copy()
        • hdf5_wrapper.insert()
        • hdf5_wrapper.keys()
        • hdf5_wrapper.link()
        • hdf5_wrapper.values()
  • GEOS ATS
    • run_geos_ats
      • Positional Arguments
      • Named Arguments
    • Debugging
    • API
      • Restart Check
        • FileComparison
          • FileComparison.compareAttributes()
          • FileComparison.compareCharArrays()
          • FileComparison.compareData()
          • FileComparison.compareDatasets()
          • FileComparison.compareFloatArrays()
          • FileComparison.compareFloatScalars()
          • FileComparison.compareGroups()
          • FileComparison.compareIntArrays()
          • FileComparison.compareIntScalars()
          • FileComparison.compareStringArrays()
          • FileComparison.compareStringScalars()
          • FileComparison.errorMsg()
          • FileComparison.isExcluded()
          • FileComparison.warningMsg()
        • findMaxMatchingFile()
        • main()
        • write()
        • writeHeader()
      • Curve Check
        • check_diff()
        • compare_time_history_curves()
        • curve_check_figure()
        • curve_check_parser()
        • evaluate_external_script()
        • interpolate_values_time()
        • main()
  • GEOS Mesh Tools
    • Mesh Doctor
      • Modules
        • collocated_nodes
        • element_volumes
        • fix_elements_orderings
        • generate_cube
        • generate_fractures
        • generate_global_ids
        • non_conformal
        • self_intersecting_elements
        • supported_elements
    • Mesh Conversion
      • convert_abaqus
        • Positional Arguments
        • Named Arguments
      • API
        • convert_abaqus_to_gmsh()
        • convert_abaqus_to_vtu()
  • GEOS Post-Processing tools
    • Home
    • Processing
      • vtk Filters
        • geos_posp.filters.AttributeMappingFromCellCoords module
          • AttributeMappingFromCellCoords
            • AttributeMappingFromCellCoords.GetCellMap()
            • AttributeMappingFromCellCoords.RequestData()
            • AttributeMappingFromCellCoords.RequestDataObject()
            • AttributeMappingFromCellCoords.SetLogger()
            • AttributeMappingFromCellCoords.SetTransferAttributeNames()
            • AttributeMappingFromCellCoords.computeCellMapping()
            • AttributeMappingFromCellCoords.transferAttributes()
        • geos_posp.filters.AttributeMappingFromCellId module
          • AttributeMappingFromCellId
            • AttributeMappingFromCellId.RequestData()
            • AttributeMappingFromCellId.RequestDataObject()
            • AttributeMappingFromCellId.SetIDAttributeName()
            • AttributeMappingFromCellId.SetLogger()
            • AttributeMappingFromCellId.SetTransferAttributeName()
            • AttributeMappingFromCellId.getCellMap()
        • geos_posp.filters.GeomechanicsCalculator module
          • GeomechanicsCalculator
            • GeomechanicsCalculator.FillInputPortInformation()
            • GeomechanicsCalculator.RequestData()
            • GeomechanicsCalculator.RequestDataObject()
            • GeomechanicsCalculator.RequestInformation()
            • GeomechanicsCalculator.SetFrictionAngle()
            • GeomechanicsCalculator.SetGrainBulkModulus()
            • GeomechanicsCalculator.SetLogger()
            • GeomechanicsCalculator.SetRockCohesion()
            • GeomechanicsCalculator.SetSpecificDensity()
            • GeomechanicsCalculator.checkMandatoryAttributes()
            • GeomechanicsCalculator.computeAdvancedOutputs()
            • GeomechanicsCalculator.computeAdvancedOutputsOff()
            • GeomechanicsCalculator.computeAdvancedOutputsOn()
            • GeomechanicsCalculator.computeBasicOutputs()
            • GeomechanicsCalculator.computeBiotCoefficient()
            • GeomechanicsCalculator.computeCompressibilityCoefficient()
            • GeomechanicsCalculator.computeCriticalPorePressure()
            • GeomechanicsCalculator.computeCriticalTotalStressRatio()
            • GeomechanicsCalculator.computeDepthAlongLine()
            • GeomechanicsCalculator.computeDepthInMesh()
            • GeomechanicsCalculator.computeEffectiveStressRatioOed()
            • GeomechanicsCalculator.computeElasticModulus()
            • GeomechanicsCalculator.computeElasticModulusFromBulkShear()
            • GeomechanicsCalculator.computeElasticModulusFromYoungPoisson()
            • GeomechanicsCalculator.computeElasticStrain()
            • GeomechanicsCalculator.computeLitostaticStress()
            • GeomechanicsCalculator.computeRealEffectiveStressRatio()
            • GeomechanicsCalculator.computeReservoirStressPathOed()
            • GeomechanicsCalculator.computeReservoirStressPathReal()
            • GeomechanicsCalculator.computeSpecificGravity()
            • GeomechanicsCalculator.computeStressRatioReal()
            • GeomechanicsCalculator.computeTotalStressInitial()
            • GeomechanicsCalculator.computeTotalStresses()
            • GeomechanicsCalculator.doComputeTotalStress()
            • GeomechanicsCalculator.getOutputType()
            • GeomechanicsCalculator.getPointCoordinates()
            • GeomechanicsCalculator.getZcoordinates()
            • GeomechanicsCalculator.initFilter()
            • GeomechanicsCalculator.resetDefaultValues()
        • geos_posp.filters.GeosBlockExtractor module
          • GeosBlockExtractor
            • GeosBlockExtractor.ExtractFaultsOff()
            • GeosBlockExtractor.ExtractFaultsOn()
            • GeosBlockExtractor.ExtractWellsOff()
            • GeosBlockExtractor.ExtractWellsOn()
            • GeosBlockExtractor.FillInputPortInformation()
            • GeosBlockExtractor.RequestData()
            • GeosBlockExtractor.RequestInformation()
            • GeosBlockExtractor.SetLogger()
            • GeosBlockExtractor.UpdateOutputPorts()
            • GeosBlockExtractor.doExtraction()
            • GeosBlockExtractor.extractRegion()
            • GeosBlockExtractor.getOutputFaults()
            • GeosBlockExtractor.getOutputVolume()
            • GeosBlockExtractor.getOutputWells()
        • geos_posp.filters.GeosBlockMerge module
          • GeosBlockMerge
            • GeosBlockMerge.ConvertSurfaceMeshOff()
            • GeosBlockMerge.ConvertSurfaceMeshOn()
            • GeosBlockMerge.FillInputPortInformation()
            • GeosBlockMerge.RequestData()
            • GeosBlockMerge.RequestInformation()
            • GeosBlockMerge.SetLogger()
            • GeosBlockMerge.computeNormals()
            • GeosBlockMerge.computeTangents()
            • GeosBlockMerge.convertBlockToSurface()
            • GeosBlockMerge.convertFaultsToSurfaces()
            • GeosBlockMerge.doMerge()
            • GeosBlockMerge.getPhaseNames()
            • GeosBlockMerge.getPhases()
            • GeosBlockMerge.mergeChildBlocks()
            • GeosBlockMerge.mergeRankBlocks()
            • GeosBlockMerge.renameAttributes()
        • geos_posp.filters.SurfaceGeomechanics module
          • SurfaceGeomechanics
            • SurfaceGeomechanics.FillInputPortInformation()
            • SurfaceGeomechanics.GetNewAttributeNames()
            • SurfaceGeomechanics.RequestData()
            • SurfaceGeomechanics.RequestInformation()
            • SurfaceGeomechanics.SetFrictionAngle()
            • SurfaceGeomechanics.SetLogger()
            • SurfaceGeomechanics.SetRockCohesion()
            • SurfaceGeomechanics.computeChangeOfBasisMatrix()
            • SurfaceGeomechanics.computeNewCoordinates()
            • SurfaceGeomechanics.computeNewCoordinatesVector3()
            • SurfaceGeomechanics.computeNewCoordinatesVector6()
            • SurfaceGeomechanics.computeShearCapacityUtilization()
            • SurfaceGeomechanics.convertLocalToXYZBasisAttributes()
            • SurfaceGeomechanics.convertXYZToLocalBasisAttributes()
            • SurfaceGeomechanics.filterAttributesToConvert()
            • SurfaceGeomechanics.getAttributesToConvertFromLocalToXYZ()
            • SurfaceGeomechanics.getNormalTangentsVectors()
        • geos_posp.filters.TransferAttributesVolumeSurface module
          • TransferAttributesVolumeSurface
            • TransferAttributesVolumeSurface.FillInputPortInformation()
            • TransferAttributesVolumeSurface.GetAttributeNamesToTransfer()
            • TransferAttributesVolumeSurface.GetNewAttributeNames()
            • TransferAttributesVolumeSurface.RequestData()
            • TransferAttributesVolumeSurface.RequestDataObject()
            • TransferAttributesVolumeSurface.RequestInformation()
            • TransferAttributesVolumeSurface.SetAttributeNamesToTransfer()
            • TransferAttributesVolumeSurface.doTransferAttributes()
            • TransferAttributesVolumeSurface.getMeshMapping()
            • TransferAttributesVolumeSurface.m_attributeNames
            • TransferAttributesVolumeSurface.m_newAttributeNames
            • TransferAttributesVolumeSurface.m_outputSurfaceMesh
            • TransferAttributesVolumeSurface.m_surfaceMesh
            • TransferAttributesVolumeSurface.m_volumeMesh
            • TransferAttributesVolumeSurface.transferAttribute()
        • geos_posp.filters.VolumeSurfaceMeshMapper module
          • VolumeSurfaceMeshMapper
            • VolumeSurfaceMeshMapper.FillInputPortInformation()
            • VolumeSurfaceMeshMapper.GetAttributeName()
            • VolumeSurfaceMeshMapper.GetCreateAttribute()
            • VolumeSurfaceMeshMapper.GetSurfaceToVolumeConnectionSets()
            • VolumeSurfaceMeshMapper.GetVolumeToSurfaceConnectionSets()
            • VolumeSurfaceMeshMapper.RequestData()
            • VolumeSurfaceMeshMapper.RequestDataObject()
            • VolumeSurfaceMeshMapper.RequestInformation()
            • VolumeSurfaceMeshMapper.SetAttributeName()
            • VolumeSurfaceMeshMapper.SetCreateAttribute()
            • VolumeSurfaceMeshMapper.SetLogger()
            • VolumeSurfaceMeshMapper.createAttribute()
            • VolumeSurfaceMeshMapper.getAdjacentCells()
            • VolumeSurfaceMeshMapper.getCellIds()
            • VolumeSurfaceMeshMapper.getCellSide()
            • VolumeSurfaceMeshMapper.m_attributeName
            • VolumeSurfaceMeshMapper.m_createAttribute
            • VolumeSurfaceMeshMapper.m_logger
            • VolumeSurfaceMeshMapper.m_surfaceMesh
            • VolumeSurfaceMeshMapper.m_volumeMesh
      • vtk Readers
        • geos_posp.readers.GeosLogReaderAquifers module
          • GeosLogReaderAquifers
            • GeosLogReaderAquifers.calculateExtraValues()
            • GeosLogReaderAquifers.createDataframe()
            • GeosLogReaderAquifers.readAll()
            • GeosLogReaderAquifers.readAquiferNames()
            • GeosLogReaderAquifers.readPropertiesValues()
        • geos_posp.readers.GeosLogReaderConvergence module
          • GeosLogReaderConvergence
            • GeosLogReaderConvergence.calculateExtraValues()
            • GeosLogReaderConvergence.createDataframe()
            • GeosLogReaderConvergence.readAll()
            • GeosLogReaderConvergence.readIterationsValues()
        • geos_posp.readers.GeosLogReaderFlow module
          • GeosLogReaderFlow
            • GeosLogReaderFlow.createDataframe()
            • GeosLogReaderFlow.readAll()
            • GeosLogReaderFlow.readComputeStatisticsName()
            • GeosLogReaderFlow.readPropertiesValues()
            • GeosLogReaderFlow.readRegionNames()
        • geos_posp.readers.GeosLogReaderWells module
          • GeosLogReaderWells
            • GeosLogReaderWells.calculateMeanValues()
            • GeosLogReaderWells.createDataframe()
            • GeosLogReaderWells.initWellPropertiesValues()
            • GeosLogReaderWells.readAll()
            • GeosLogReaderWells.readPropertiesValues()
            • GeosLogReaderWells.readWellNames()
      • Processing functions
        • geos_posp.processing.geomechanicsCalculatorFunctions module
          • biotCoefficient()
          • bulkModulus()
          • compressibility()
          • compressibilityOed()
          • compressibilityReal()
          • computeNormalShearStress()
          • computeStressPrincipalComponents()
          • computeStressPrincipalComponentsFromStressVector()
          • criticalPorePressure()
          • criticalPorePressureThreshold()
          • criticalTotalStressRatio()
          • deviatoricStressPathOed()
          • elasticStrainFromBulkShear()
          • elasticStrainFromYoungPoisson()
          • lambdaCoefficient()
          • lithostaticStress()
          • oedometricModulus()
          • poissonRatio()
          • reservoirStressPathOed()
          • reservoirStressPathReal()
          • shearCapacityUtilization()
          • shearModulus()
          • specificGravity()
          • stressRatio()
          • totalStress()
          • totalStressRatioThreshold()
          • youngModulus()
        • geos_posp.processing.geosLogReaderFunctions module
          • buildPropertiesNameForComponents()
          • buildPropertiesNameForPhases()
          • buildPropertiesNameFromGeosProperties()
          • buildPropertiesNameNoPhases()
          • convertValues()
          • correctZeroValuesInListOfValues()
          • countNumberLines()
          • elementsAreInLog()
          • extractAquifer()
          • extractFirstIntFromString()
          • extractFloatsFromString()
          • extractLinearIter()
          • extractListIntsFromString()
          • extractNewtonIter()
          • extractPhaseId()
          • extractPhaseModel()
          • extractPropertiesFlow()
          • extractPropertiesWell()
          • extractRegion()
          • extractStatsName()
          • extractTimeAndDt()
          • extractValueAndNameAquifer()
          • extractValuesFlow()
          • extractValuesWell()
          • extractWell()
          • extractWellTags()
          • findNumberPhasesSimulation()
          • formatPropertyName()
          • identifyCurrentWell()
          • identifyProperties()
          • isFloat()
          • phaseNamesBuilder()
          • replaceSpecialCharactersWithWhitespace()
          • timeInSecond()
          • transformUserChoiceToListPhases()
        • geos_posp.processing.MohrCircle module
          • MohrCircle
            • MohrCircle.computePrincipalComponents()
            • MohrCircle.getCircleCenter()
            • MohrCircle.getCircleId()
            • MohrCircle.getCircleRadius()
            • MohrCircle.getPrincipalComponents()
            • MohrCircle.setCircleId()
            • MohrCircle.setPrincipalComponents()
        • geos_posp.processing.MohrCoulomb module
          • MohrCoulomb
            • MohrCoulomb.computeFailureEnvelop()
            • MohrCoulomb.computeShearStress()
        • geos_posp.processing.multiblockInpectorTreeFunctions module
          • getBlockElementIndexes()
          • getBlockElementIndexesFlatten()
          • getBlockFromFlatIndex()
          • getBlockFromName()
          • getBlockIndexFromName()
          • getBlockName()
          • getBlockNameFromIndex()
          • getElementaryCompositeBlockIndexes()
        • geos_posp.processing.vtkUtils module
          • computeCellCenterCoordinates()
          • copyAttribute()
          • copyAttributeDataSet()
          • createAttribute()
          • createCellCenterAttribute()
          • createConstantAttribute()
          • createConstantAttributeDataSet()
          • createConstantAttributeMultiBlock()
          • createEmptyAttribute()
          • doCreateCellCenterAttribute()
          • extractBlock()
          • extractSurfaceFromElevation()
          • fillAllPartialAttributes()
          • fillPartialAttributes()
          • getArrayInObject()
          • getAttributeSet()
          • getAttributeValuesAsDF()
          • getAttributesFromDataSet()
          • getAttributesFromMultiBlockDataSet()
          • getAttributesWithNumberOfComponents()
          • getBounds()
          • getComponentNames()
          • getComponentNamesDataSet()
          • getComponentNamesMultiBlock()
          • getMonoBlockBounds()
          • getMultiBlockBounds()
          • getNumberOfComponents()
          • getNumberOfComponentsDataSet()
          • getNumberOfComponentsMultiBlock()
          • getVtkArrayInObject()
          • isAttributeInObject()
          • isAttributeInObjectDataSet()
          • isAttributeInObjectMultiBlockDataSet()
          • mergeBlocks()
          • renameAttribute()
          • transferPointDataToCellData()
      • pyvistaTools
        • geos_posp.pyvistaTools.pyvistaUtils module
          • getBlockByName()
          • loadDataSet()
    • Visualization
      • Paraview plugins
        • PVplugins.PVAttributeMapping module
        • PVplugins.PVCreateConstantAttributePerRegion module
        • PVplugins.PVExtractMergeBlocksVolume module
        • PVplugins.PVExtractMergeBlocksVolumeSurface module
        • PVplugins.PVExtractMergeBlocksVolumeSurfaceWell module
        • PVplugins.PVExtractMergeBlocksVolumeWell module
        • PVplugins.PVGeomechanicsAnalysis module
        • PVplugins.PVGeomechanicsWorkflowVolume module
        • PVplugins.PVGeomechanicsWorkflowVolumeSurface module
        • PVplugins.PVGeomechanicsWorkflowVolumeSurfaceWell module
        • PVplugins.PVGeomechanicsWorkflowVolumeWell module
        • PVplugins.PVGeosLogReader module
          • PVGeosLogReader
            • PVGeosLogReader.RequestData()
            • PVGeosLogReader.RequestInformation()
            • PVGeosLogReader.a04PropertyGroup()
            • PVGeosLogReader.a05SetPropertiesFlow()
            • PVGeosLogReader.a06GroupFlow()
            • PVGeosLogReader.a07SetPropertiesWells()
            • PVGeosLogReader.a08SetTheNumberOfWellsMean()
            • PVGeosLogReader.a09GroupWells()
            • PVGeosLogReader.a10SetPropertiesAquifers()
            • PVGeosLogReader.a11GroupAquifers()
            • PVGeosLogReader.a12SetConvergence()
            • PVGeosLogReader.a13GroupSolvers()
            • PVGeosLogReader.b09GroupUnitsToUse()
            • PVGeosLogReader.createDataframe()
            • PVGeosLogReader.getDataframeChoice()
            • PVGeosLogReader.getFilepath()
            • PVGeosLogReader.getIdsToUse()
            • PVGeosLogReader.getNumberOfWellsMean()
            • PVGeosLogReader.getPhasesUserChoice()
            • PVGeosLogReader.getUnitChoices()
            • PVGeosLogReader.getUseSIUnits()
        • PVplugins.PVMergeBlocksEnhanced module
        • PVplugins.PVMohrCirclePlot module
        • PVplugins.PVPythonViewConfigurator module
        • PVplugins.PVSurfaceGeomechanics module
        • PVplugins.PVTransferAttributesVolumeSurface module
      • Utilities
        • PVUtils Package
          • geos_posp.visu.PVUtils.DisplayOrganizationParaview module
            • DisplayOrganizationParaview
              • DisplayOrganizationParaview.RemoveViewFromLayout()
              • DisplayOrganizationParaview.SwapCellsInLayout()
              • DisplayOrganizationParaview.addLayout()
              • DisplayOrganizationParaview.addOneToCpt()
              • DisplayOrganizationParaview.addViewToLayout()
              • DisplayOrganizationParaview.getLayoutViews()
              • DisplayOrganizationParaview.getLayoutsKeys()
              • DisplayOrganizationParaview.getLayoutsNames()
              • DisplayOrganizationParaview.getNumberLayouts()
              • DisplayOrganizationParaview.getViewsCpt()
              • DisplayOrganizationParaview.getViewsName()
              • DisplayOrganizationParaview.initLayoutViews()
              • DisplayOrganizationParaview.initLayouts()
              • DisplayOrganizationParaview.removeLayout()
              • DisplayOrganizationParaview.updateOrganization()
            • buildNewLayoutWithPythonView()
          • geos_posp.visu.PVUtils.checkboxFunction module
            • createModifiedCallback()
          • geos_posp.visu.PVUtils.paraviewTreatments module
            • addDataframeColumnsToVtkPolyData()
            • dataframeForEachTimestep()
            • findSubArrayNames()
            • getArrayChoices()
            • getDataframesFromMultipleVTKSources()
            • getDatasFromSources()
            • getFilterInput()
            • getPossibleSourceNames()
            • getTimeStepIndex()
            • getVtkOriginalCellIds()
            • integrateSourceNames()
            • isFilter()
            • mergeDataframes()
            • mergeFilterPV()
            • strEnumToEnumerationDomainXml()
            • strListToEnumerationDomainXml()
            • usefulSourceNamesPipeline()
            • usefulVisibleDatasPipeline()
            • vtkPolyDataToPointsDataframe()
            • vtkTableToDataframe()
            • vtkToDataframe()
            • vtkUnstructuredGridCellsToDataframe()
          • geos_posp.visu.PVUtils.matplotlibOptions module
            • FontStyleEnum
              • FontStyleEnum.ITALIC
              • FontStyleEnum.NORMAL
              • FontStyleEnum.OBLIQUE
            • FontWeightEnum
              • FontWeightEnum.BOLD
              • FontWeightEnum.HEAVY
              • FontWeightEnum.LIGHT
              • FontWeightEnum.NORMAL
            • LegendLocationEnum
              • LegendLocationEnum.BEST
              • LegendLocationEnum.CENTER
              • LegendLocationEnum.CENTER_LEFT
              • LegendLocationEnum.CENTER_RIGHT
              • LegendLocationEnum.LOWER_CENTER
              • LegendLocationEnum.LOWER_LEFT
              • LegendLocationEnum.LOWER_RIGHT
              • LegendLocationEnum.UPPER_CENTER
              • LegendLocationEnum.UPPER_LEFT
              • LegendLocationEnum.UPPER_RIGHT
            • LineStyleEnum
              • LineStyleEnum.DASHDOT
              • LineStyleEnum.DASHED
              • LineStyleEnum.DOTTED
              • LineStyleEnum.NONE
              • LineStyleEnum.SOLID
            • MarkerStyleEnum
              • MarkerStyleEnum.CIRCLE
              • MarkerStyleEnum.DIAMOND
              • MarkerStyleEnum.NONE
              • MarkerStyleEnum.PLUS
              • MarkerStyleEnum.POINT
              • MarkerStyleEnum.SQUARE
              • MarkerStyleEnum.STAR
              • MarkerStyleEnum.TRIANGLE
              • MarkerStyleEnum.X
            • OptionSelectionEnum
            • optionEnumToXml()
        • Mohr’s Circle Package
          • geos_posp.visu.mohrCircles.functionsMohrCircle module
            • buildPythonViewScript()
            • createMohrCircleAtTimeStep()
            • createMohrCirclesFromPrincipalComponents()
            • createMohrCoulombEnvelope()
            • findAnnotateTuples()
            • getMohrCircleId()
          • geos_posp.visu.mohrCircles.plotMohrCircles module
            • createMohrCirclesFigure()
            • updateTitle()
        • PythonViewUtils Package
          • geos_posp.visu.pythonViewUtils.Figure2DGenerator module
            • Figure2DGenerator
              • Figure2DGenerator.changeAxisLimits()
              • Figure2DGenerator.changeAxisScale()
              • Figure2DGenerator.changeMinorticks()
              • Figure2DGenerator.changeTitle()
              • Figure2DGenerator.enhanceFigure()
              • Figure2DGenerator.getFigure()
              • Figure2DGenerator.initMinus1Multiplication()
              • Figure2DGenerator.plotInitialFigure()
          • geos_posp.visu.pythonViewUtils.functionsFigure2DGenerator module
            • abbreviateLabel()
            • adjust_subplots()
            • applyCustomizationOnLine()
            • associatePropertyToAxeType()
            • associationIdentifiers()
            • basicFigure()
            • buildFontCurves()
            • buildFontTitle()
            • buildFontVariable()
            • customizeLines()
            • findClosestPairIntegers()
            • findExtremasAssociatedProperties()
            • findExtremasPropertiesForAssociatedIdentifiers()
            • findIdentifier()
            • findJobName()
            • findPhasesLabel()
            • getAxeLimits()
            • getExtremaAllAxes()
            • invertedBasicFigure()
            • isprime()
            • multipleSubplots()
            • multipleSubplotsInverted()
            • oneSubplot()
            • oneSubplotInverted()
            • plotAxe()
            • propertiesPerIdentifier()
            • setupAllAxes()
            • setupAxeToUse()
            • smartLabel()
            • smartLabelsSorted()
            • smartLayout()
  • Time History Tools
    • getHistorySeries()
  • GEOS Utilities
    • API
      • geos.utils.ConnectionSet module
        • ConnectionSet
          • ConnectionSet.addConnectedCells()
          • ConnectionSet.copy()
          • ConnectionSet.getCellIdRef()
          • ConnectionSet.getConnectedCellIds()
          • ConnectionSet.setCellIdRef()
          • ConnectionSet.setConnectedCellIds()
        • ConnectionSetCollection
          • ConnectionSetCollection.add()
          • ConnectionSetCollection.addMultiple()
          • ConnectionSetCollection.containsCellIdRef()
          • ConnectionSetCollection.containsEqual()
          • ConnectionSetCollection.discard()
          • ConnectionSetCollection.discardCellIdRef()
          • ConnectionSetCollection.get()
          • ConnectionSetCollection.getReversedConnectionSetCollection()
          • ConnectionSetCollection.replace()
          • ConnectionSetCollection.update()
      • geos.utils.enumUnits module
        • Density
          • Density.G_PER_CUBIC_CENTIMETER
          • Density.KG_PER_CUBIC_METER
          • Density.POUND_PER_BBL
        • Length
          • Length.FEET
          • Length.KILOMETER
          • Length.METER
          • Length.MILE
        • Mass
          • Mass.KG
          • Mass.MEGATON
          • Mass.POUND
          • Mass.TON
        • MassRate
          • MassRate.KG_PER_DAY
          • MassRate.KG_PER_HOUR
          • MassRate.KG_PER_SECOND
          • MassRate.MTPA
          • MassRate.TON_PER_DAY
        • NoUnit
          • NoUnit.SAME
        • Permeability
          • Permeability.DARCY
          • Permeability.MILLI_DARCY
          • Permeability.SQUARE_METER
        • Pressure
          • Pressure.BAR
          • Pressure.GPA
          • Pressure.KPA
          • Pressure.MPA
          • Pressure.PA
          • Pressure.PSI
        • Temperature
          • Temperature.CELSIUS
          • Temperature.FAHRENHEIT
          • Temperature.K
        • Time
          • Time.DAY
          • Time.HOUR
          • Time.MONTH
          • Time.SECOND
          • Time.YEAR
        • Unit
        • Volume
          • Volume.BBL
          • Volume.CUBIC_FEET
          • Volume.CUBIC_METER
        • VolumetricRate
          • VolumetricRate.BBL_PER_DAY
          • VolumetricRate.CUBIC_METER_PER_DAY
          • VolumetricRate.CUBIC_METER_PER_HOUR
          • VolumetricRate.CUBIC_METER_PER_SECOND
        • convert()
        • enumerationDomainUnit()
        • getPropertyUnitEnum()
        • getSIUnits()
      • geos.utils.geometryFunctions module
        • computeCoordinatesInNewBasis()
        • computePlaneFrom3Points()
        • getCellSideAgainstPlane()
        • getChangeOfBasisMatrix()
        • getPointSideAgainstPlane()
      • geos.utils.GeosOutputsConstants module
        • AttributeEnum
        • ComponentNameEnum
          • ComponentNameEnum.NONE
          • ComponentNameEnum.NORMAL_TANGENTS
          • ComponentNameEnum.XYZ
        • FluidPrefixEnum
          • FluidPrefixEnum.FLUID
          • FluidPrefixEnum.GAS
          • FluidPrefixEnum.WATER
        • GeosDomainNameEnum
          • GeosDomainNameEnum.FAULT_DOMAIN_NAME
          • GeosDomainNameEnum.VOLUME_DOMAIN_NAME
          • GeosDomainNameEnum.WELL_DOMAIN_NAME
        • GeosLogOutputsEnum
          • GeosLogOutputsEnum.PHASE
        • GeosMeshOutputsEnum
          • GeosMeshOutputsEnum.BULK_MODULUS
          • GeosMeshOutputsEnum.CELL_ID
          • GeosMeshOutputsEnum.DELTA_PRESSURE
          • GeosMeshOutputsEnum.DISPLACEMENT_JUMP
          • GeosMeshOutputsEnum.ELEMENT_CENTER
          • GeosMeshOutputsEnum.GRAIN_BULK_MODULUS
          • GeosMeshOutputsEnum.MASS
          • GeosMeshOutputsEnum.PERMEABILITY
          • GeosMeshOutputsEnum.POINT
          • GeosMeshOutputsEnum.POINTS_ID
          • GeosMeshOutputsEnum.POROSITY
          • GeosMeshOutputsEnum.POROSITY_INI
          • GeosMeshOutputsEnum.PRESSURE
          • GeosMeshOutputsEnum.ROCK_DENSITY
          • GeosMeshOutputsEnum.SHEAR_MODULUS
          • GeosMeshOutputsEnum.STRESS_EFFECTIVE
          • GeosMeshOutputsEnum.TOTAL_DISPLACEMENT
          • GeosMeshOutputsEnum.TRACTION
          • GeosMeshOutputsEnum.VTK_ORIGINAL_CELL_ID
          • GeosMeshOutputsEnum.WATER_DENSITY
        • GeosMeshSuffixEnum
          • GeosMeshSuffixEnum.BIOT_COEFFICIENT_SUFFIX
          • GeosMeshSuffixEnum.BULK_MODULUS_SUFFIX
          • GeosMeshSuffixEnum.DENSITY_SUFFIX
          • GeosMeshSuffixEnum.GRAIN_BULK_MODULUS_SUFFIX
          • GeosMeshSuffixEnum.PERMEABILITY_SUFFIX
          • GeosMeshSuffixEnum.PHASE_DENSITY_SUFFIX
          • GeosMeshSuffixEnum.PHASE_FRACTION_SUFFIX
          • GeosMeshSuffixEnum.PHASE_MASS_DENSITY_SUFFIX
          • GeosMeshSuffixEnum.PHASE_VISCOSITY_SUFFIX
          • GeosMeshSuffixEnum.POROSITY_REF_SUFFIX
          • GeosMeshSuffixEnum.POROSITY_SUFFIX
          • GeosMeshSuffixEnum.SHEAR_MODULUS_SUFFIX
          • GeosMeshSuffixEnum.STRAIN_SUFFIX
          • GeosMeshSuffixEnum.STRESS_SUFFIX
          • GeosMeshSuffixEnum.SURFACE_MINUS_SUFFIX
          • GeosMeshSuffixEnum.SURFACE_PLUS_SUFFIX
        • OutputObjectEnum
          • OutputObjectEnum.FAULTS
          • OutputObjectEnum.VOLUME
          • OutputObjectEnum.WELLS
        • PHASE_SEP
        • PhaseTypeEnum
          • PhaseTypeEnum.FLUID
          • PhaseTypeEnum.ROCK
          • PhaseTypeEnum.UNKNOWN
        • PostProcessingOutputsEnum
          • PostProcessingOutputsEnum.ADJACENT_CELL_SIDE
          • PostProcessingOutputsEnum.BIOT_COEFFICIENT
          • PostProcessingOutputsEnum.BIOT_COEFFICIENT_INITIAL
          • PostProcessingOutputsEnum.BLOCK_INDEX
          • PostProcessingOutputsEnum.BULK_MODULUS_INITIAL
          • PostProcessingOutputsEnum.COMPRESSIBILITY
          • PostProcessingOutputsEnum.COMPRESSIBILITY_OED
          • PostProcessingOutputsEnum.COMPRESSIBILITY_REAL
          • PostProcessingOutputsEnum.CRITICAL_PORE_PRESSURE
          • PostProcessingOutputsEnum.CRITICAL_PORE_PRESSURE_THRESHOLD
          • PostProcessingOutputsEnum.CRITICAL_TOTAL_STRESS_RATIO
          • PostProcessingOutputsEnum.LITHOSTATIC_STRESS
          • PostProcessingOutputsEnum.OEDOMETRIC_MODULUS
          • PostProcessingOutputsEnum.POISSON_RATIO
          • PostProcessingOutputsEnum.POISSON_RATIO_INITIAL
          • PostProcessingOutputsEnum.RSP_OED
          • PostProcessingOutputsEnum.RSP_REAL
          • PostProcessingOutputsEnum.SCU
          • PostProcessingOutputsEnum.SHEAR_MODULUS_INITIAL
          • PostProcessingOutputsEnum.SPECIFIC_GRAVITY
          • PostProcessingOutputsEnum.STRAIN_ELASTIC
          • PostProcessingOutputsEnum.STRESS_EFFECTIVE_INITIAL
          • PostProcessingOutputsEnum.STRESS_EFFECTIVE_RATIO_OED
          • PostProcessingOutputsEnum.STRESS_EFFECTIVE_RATIO_REAL
          • PostProcessingOutputsEnum.STRESS_TOTAL
          • PostProcessingOutputsEnum.STRESS_TOTAL_DELTA
          • PostProcessingOutputsEnum.STRESS_TOTAL_INITIAL
          • PostProcessingOutputsEnum.STRESS_TOTAL_RATIO_REAL
          • PostProcessingOutputsEnum.TOTAL_STRESS_RATIO_THRESHOLD
          • PostProcessingOutputsEnum.YOUNG_MODULUS
          • PostProcessingOutputsEnum.YOUNG_MODULUS_INITIAL
        • getAttributeToConvertFromLocalToXYZ()
        • getAttributeToTransferFromInitialTime()
        • getRockSuffixRenaming()
      • geos.utils.algebraFunctions module
        • getAttributeMatrixFromVector()
        • getAttributeVectorFromMatrix()
      • geos.utils.Logger module
        • CustomLoggerFormatter
          • CustomLoggerFormatter.FORMATS
          • CustomLoggerFormatter.FORMATS_PV
          • CustomLoggerFormatter.bold_red
          • CustomLoggerFormatter.format()
          • CustomLoggerFormatter.format1
          • CustomLoggerFormatter.format2
          • CustomLoggerFormatter.grey
          • CustomLoggerFormatter.red
          • CustomLoggerFormatter.reset
          • CustomLoggerFormatter.yellow
        • Logger
          • Logger.addHandler()
          • Logger.callHandlers()
          • Logger.critical()
          • Logger.debug()
          • Logger.error()
          • Logger.exception()
          • Logger.fatal()
          • Logger.findCaller()
          • Logger.getChild()
          • Logger.getEffectiveLevel()
          • Logger.handle()
          • Logger.hasHandlers()
          • Logger.info()
          • Logger.isEnabledFor()
          • Logger.log()
          • Logger.makeRecord()
          • Logger.manager
          • Logger.removeHandler()
          • Logger.root
          • Logger.setLevel()
          • Logger.warn()
          • Logger.warning()
        • getLogger()
      • geos.utils.PhysicalConstants module
        • DEFAULT_FRICTION_ANGLE_DEG
        • DEFAULT_FRICTION_ANGLE_RAD
        • DEFAULT_GRAIN_BULK_MODULUS
        • DEFAULT_ROCK_COHESION
        • EPSILON
        • GRAVITY
        • WATER_DENSITY
        • WATER_DYNAMIC_VISCOSITY
        • WATER_KINEMATIC_VISCOSITY
      • geos.utils.UnitRepository module
        • UnitRepository
          • UnitRepository.getPropertiesUnit()
          • UnitRepository.initPropertiesUnit()
  • GEOS XML Tools
    • convert_abaqus
      • Named Arguments
    • format_xml
      • Positional Arguments
      • Named Arguments
    • check_xml_attribute_coverage
      • Named Arguments
    • check_xml_redundancy
      • Named Arguments
    • API
      • check_mpi_rank()
      • format_geosx_arguments()
      • preprocess_parallel()
      • preprocess_serial()
      • wait_for_file_write_rank_0()
      • apply_regex_to_node()
      • generate_random_name()
      • merge_included_xml_files()
      • merge_xml_nodes()
      • process()
      • validate_xml()
      • format_attribute()
      • format_file()
      • format_xml_level()
      • main()
      • UnitManager
        • UnitManager.buildUnits()
        • UnitManager.regexHandler()
      • DictRegexHandler
      • SymbolicMathRegexHandler()
      • check_redundancy_level()
      • check_xml_redundancy()
      • main()
      • process_xml_files()
      • collect_xml_attributes()
      • collect_xml_attributes_level()
      • main()
      • parse_schema()
      • parse_schema_element()
      • process_xml_files()
      • write_attribute_usage_xml()
      • write_attribute_usage_xml_level()
      • read_GEOS_table()
      • write_GEOS_table()
      • write_read_GEOS_table_example()
  • PyGEOS Tools
    • API
      • allgather_wrapper()
      • gather_wrapper()
      • get_global_value_range()
      • get_matching_wrapper_path()
      • get_wrapper()
      • get_wrapper_par()
      • plot_history()
      • print_global_value_range()
      • run_queries()
      • search_datastructure_wrappers_recursive()
      • set_wrapper_to_value()
      • set_wrapper_with_function()
      • load_tables()
      • save_tables()
      • apply_to_bins()
      • extrapolate_nan_values()
      • get_random_realization()
      • get_realizations()
      • convert_E_nu_to_K_G()
      • estimate_shmin()
      • parse_las()
GEOS Python Packages
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