GEOS Python Packages
  • HDF5 Wrapper
    • Usage
    • API
      • hdf5_wrapper
        • hdf5_wrapper.close()
        • hdf5_wrapper.copy()
        • hdf5_wrapper.get_copy()
        • hdf5_wrapper.insert()
        • hdf5_wrapper.items()
        • hdf5_wrapper.keys()
        • hdf5_wrapper.link()
        • hdf5_wrapper.values()
  • GEOS ATS
    • run_geos_ats
      • Positional Arguments
      • Named Arguments
    • Debugging
    • API
      • Restart Check
        • FileComparison
          • FileComparison.compareAttributes()
          • FileComparison.compareCharArrays()
          • FileComparison.compareData()
          • FileComparison.compareDatasets()
          • FileComparison.compareFloatArrays()
          • FileComparison.compareFloatScalars()
          • FileComparison.compareGroups()
          • FileComparison.compareIntArrays()
          • FileComparison.compareIntScalars()
          • FileComparison.compareStringArrays()
          • FileComparison.compareStringScalars()
          • FileComparison.errorMsg()
          • FileComparison.isExcluded()
          • FileComparison.warningMsg()
        • findMaxMatchingFile()
        • main()
        • write()
        • writeHeader()
      • Curve Check
        • check_diff()
        • compare_time_history_curves()
        • curve_check_figure()
        • curve_check_parser()
        • evaluate_external_script()
        • interpolate_values_time()
        • main()
  • GEOS Geomechanics tools
    • GEOS Geomechanics Tools
    • GEOS geomechanics tools
      • Geomechanics models
        • geos.geomechanics.model.MohrCircle module
          • MohrCircle
            • MohrCircle.computePrincipalComponents()
            • MohrCircle.getCircleCenter()
            • MohrCircle.getCircleId()
            • MohrCircle.getCircleRadius()
            • MohrCircle.getPrincipalComponents()
            • MohrCircle.setCircleId()
            • MohrCircle.setPrincipalComponents()
        • geos.geomechanics.model.MohrCoulomb module
          • MohrCoulomb
            • MohrCoulomb.computeFailureEnvelop()
            • MohrCoulomb.computeShearStress()
      • Processing
        • geos.geomechanics.processing.geomechanicsCalculatorFunctions module
          • biotCoefficient()
          • bulkModulus()
          • compressibility()
          • compressibilityOed()
          • compressibilityReal()
          • computeNormalShearStress()
          • computeStressPrincipalComponents()
          • computeStressPrincipalComponentsFromStressVector()
          • criticalPorePressure()
          • criticalPorePressureThreshold()
          • criticalTotalStressRatio()
          • deviatoricStressPathOed()
          • elasticStrainFromBulkShear()
          • elasticStrainFromYoungPoisson()
          • lambdaCoefficient()
          • lithostaticStress()
          • oedometricModulus()
          • poissonRatio()
          • reservoirStressPathOed()
          • reservoirStressPathReal()
          • shearCapacityUtilization()
          • shearModulus()
          • specificGravity()
          • stressRatio()
          • totalStress()
          • totalStressRatioThreshold()
          • youngModulus()
  • GEOS Mesh tools
    • Mesh Doctor
      • Prerequisites
      • Modules
        • all_checks and main_checks
        • collocated_nodes
        • element_volumes
        • fix_elements_orderings
        • generate_cube
        • generate_fractures
        • generate_global_ids
        • non_conformal
        • self_intersecting_elements
        • supported_elements
    • Mesh Conversion
      • convert_abaqus
        • Positional Arguments
        • Named Arguments
      • API
        • convert_abaqus_to_gmsh()
        • convert_abaqus_to_vtu()
    • Input/Outputs
      • geos.mesh.io.vtkIO module
        • VtkOutput
          • VtkOutput.is_data_mode_binary
          • VtkOutput.output
        • read_mesh()
        • write_mesh()
    • Model
      • geos.mesh.model.CellTypeCounts filter
        • CellTypeCounts
          • CellTypeCounts.addType()
          • CellTypeCounts.getTypeCount()
          • CellTypeCounts.print()
          • CellTypeCounts.setTypeCount()
    • Processing filters
      • geos.mesh.processing.SplitMesh filter
        • SplitMesh
          • SplitMesh.FillInputPortInformation()
          • SplitMesh.RequestData()
          • SplitMesh.RequestDataObject()
    • Mesh stats tools
      • geos.mesh.stats.CellTypeCounter filter
        • CellTypeCounter
          • CellTypeCounter.FillInputPortInformation()
          • CellTypeCounter.GetCellTypeCounts()
          • CellTypeCounter.RequestData()
          • CellTypeCounter.getAllCellTypes()
    • Mesh utilities
      • geos.mesh.utils.genericHelpers module
        • createMultiCellMesh()
        • createSingleCellMesh()
        • createVertices()
        • extractSurfaceFromElevation()
        • getBounds()
        • getBoundsFromPointCoords()
        • getMonoBlockBounds()
        • getMultiBlockBounds()
        • to_vtk_id_list()
        • vtk_iter()
      • geos.mesh.utils.arrayHelpers module
        • computeCellCenterCoordinates()
        • getArrayByName()
        • getArrayInObject()
        • getArrayNames()
        • getAttributeSet()
        • getAttributeValuesAsDF()
        • getAttributesFromDataSet()
        • getAttributesFromMultiBlockDataSet()
        • getAttributesWithNumberOfComponents()
        • getBounds()
        • getComponentNames()
        • getComponentNamesDataSet()
        • getComponentNamesMultiBlock()
        • getCopyArrayByName()
        • getFieldType()
        • getMonoBlockBounds()
        • getMultiBlockBounds()
        • getNumberOfComponents()
        • getNumberOfComponentsDataSet()
        • getNumberOfComponentsMultiBlock()
        • getNumpyArrayByName()
        • getNumpyGlobalIdsArray()
        • getVtkArrayInObject()
        • getVtkArrayTypeInMultiBlock()
        • getVtkArrayTypeInObject()
        • has_array()
        • isAttributeGlobal()
        • isAttributeInObject()
        • isAttributeInObjectDataSet()
        • isAttributeInObjectMultiBlockDataSet()
        • sortArrayByGlobalIds()
      • geos.mesh.utils.arrayModifiers module
        • copyAttribute()
        • copyAttributeDataSet()
        • createAttribute()
        • createCellCenterAttribute()
        • createConstantAttribute()
        • createConstantAttributeDataSet()
        • createConstantAttributeMultiBlock()
        • createEmptyAttribute()
        • doCreateCellCenterAttribute()
        • fillAllPartialAttributes()
        • fillPartialAttributes()
        • renameAttribute()
        • transferPointDataToCellData()
      • geos.mesh.utils.multiblockHelpers module
        • extractBlock()
        • getBlockElementIndexes()
        • getBlockElementIndexesFlatten()
        • getBlockFromFlatIndex()
        • getBlockFromName()
        • getBlockIndexFromName()
        • getBlockName()
        • getBlockNameFromIndex()
        • getElementaryCompositeBlockIndexes()
      • geos.mesh.utils.multiblockModifiers module
        • mergeBlocks()
  • GEOS Post-Processing tools
    • Home
    • Processing
      • vtk Filters
        • geos_posp.filters.AttributeMappingFromCellCoords module
          • AttributeMappingFromCellCoords
            • AttributeMappingFromCellCoords.GetCellMap()
            • AttributeMappingFromCellCoords.RequestData()
            • AttributeMappingFromCellCoords.RequestDataObject()
            • AttributeMappingFromCellCoords.SetLogger()
            • AttributeMappingFromCellCoords.SetTransferAttributeNames()
            • AttributeMappingFromCellCoords.computeCellMapping()
            • AttributeMappingFromCellCoords.transferAttributes()
        • geos_posp.filters.AttributeMappingFromCellId module
          • AttributeMappingFromCellId
            • AttributeMappingFromCellId.RequestData()
            • AttributeMappingFromCellId.RequestDataObject()
            • AttributeMappingFromCellId.SetIDAttributeName()
            • AttributeMappingFromCellId.SetLogger()
            • AttributeMappingFromCellId.SetTransferAttributeName()
            • AttributeMappingFromCellId.getCellMap()
        • geos_posp.filters.GeomechanicsCalculator module
          • GeomechanicsCalculator
            • GeomechanicsCalculator.FillInputPortInformation()
            • GeomechanicsCalculator.RequestData()
            • GeomechanicsCalculator.RequestDataObject()
            • GeomechanicsCalculator.RequestInformation()
            • GeomechanicsCalculator.SetFrictionAngle()
            • GeomechanicsCalculator.SetGrainBulkModulus()
            • GeomechanicsCalculator.SetLogger()
            • GeomechanicsCalculator.SetRockCohesion()
            • GeomechanicsCalculator.SetSpecificDensity()
            • GeomechanicsCalculator.checkMandatoryAttributes()
            • GeomechanicsCalculator.computeAdvancedOutputs()
            • GeomechanicsCalculator.computeAdvancedOutputsOff()
            • GeomechanicsCalculator.computeAdvancedOutputsOn()
            • GeomechanicsCalculator.computeBasicOutputs()
            • GeomechanicsCalculator.computeBiotCoefficient()
            • GeomechanicsCalculator.computeCompressibilityCoefficient()
            • GeomechanicsCalculator.computeCriticalPorePressure()
            • GeomechanicsCalculator.computeCriticalTotalStressRatio()
            • GeomechanicsCalculator.computeDepthAlongLine()
            • GeomechanicsCalculator.computeDepthInMesh()
            • GeomechanicsCalculator.computeEffectiveStressRatioOed()
            • GeomechanicsCalculator.computeElasticModulus()
            • GeomechanicsCalculator.computeElasticModulusFromBulkShear()
            • GeomechanicsCalculator.computeElasticModulusFromYoungPoisson()
            • GeomechanicsCalculator.computeElasticStrain()
            • GeomechanicsCalculator.computeLitostaticStress()
            • GeomechanicsCalculator.computeRealEffectiveStressRatio()
            • GeomechanicsCalculator.computeReservoirStressPathOed()
            • GeomechanicsCalculator.computeReservoirStressPathReal()
            • GeomechanicsCalculator.computeSpecificGravity()
            • GeomechanicsCalculator.computeStressRatioReal()
            • GeomechanicsCalculator.computeTotalStressInitial()
            • GeomechanicsCalculator.computeTotalStresses()
            • GeomechanicsCalculator.doComputeTotalStress()
            • GeomechanicsCalculator.getOutputType()
            • GeomechanicsCalculator.getPointCoordinates()
            • GeomechanicsCalculator.getZcoordinates()
            • GeomechanicsCalculator.initFilter()
            • GeomechanicsCalculator.resetDefaultValues()
        • geos_posp.filters.GeosBlockExtractor module
          • GeosBlockExtractor
            • GeosBlockExtractor.ExtractFaultsOff()
            • GeosBlockExtractor.ExtractFaultsOn()
            • GeosBlockExtractor.ExtractWellsOff()
            • GeosBlockExtractor.ExtractWellsOn()
            • GeosBlockExtractor.FillInputPortInformation()
            • GeosBlockExtractor.RequestData()
            • GeosBlockExtractor.RequestInformation()
            • GeosBlockExtractor.SetLogger()
            • GeosBlockExtractor.UpdateOutputPorts()
            • GeosBlockExtractor.doExtraction()
            • GeosBlockExtractor.extractRegion()
            • GeosBlockExtractor.getOutputFaults()
            • GeosBlockExtractor.getOutputVolume()
            • GeosBlockExtractor.getOutputWells()
        • geos_posp.filters.GeosBlockMerge module
          • GeosBlockMerge
            • GeosBlockMerge.ConvertSurfaceMeshOff()
            • GeosBlockMerge.ConvertSurfaceMeshOn()
            • GeosBlockMerge.FillInputPortInformation()
            • GeosBlockMerge.RequestData()
            • GeosBlockMerge.RequestInformation()
            • GeosBlockMerge.SetLogger()
            • GeosBlockMerge.computeNormals()
            • GeosBlockMerge.computeTangents()
            • GeosBlockMerge.convertBlockToSurface()
            • GeosBlockMerge.convertFaultsToSurfaces()
            • GeosBlockMerge.doMerge()
            • GeosBlockMerge.getPhaseNames()
            • GeosBlockMerge.getPhases()
            • GeosBlockMerge.mergeChildBlocks()
            • GeosBlockMerge.mergeRankBlocks()
            • GeosBlockMerge.renameAttributes()
        • geos_posp.filters.SurfaceGeomechanics module
          • SurfaceGeomechanics
            • SurfaceGeomechanics.FillInputPortInformation()
            • SurfaceGeomechanics.GetNewAttributeNames()
            • SurfaceGeomechanics.RequestData()
            • SurfaceGeomechanics.RequestInformation()
            • SurfaceGeomechanics.SetFrictionAngle()
            • SurfaceGeomechanics.SetLogger()
            • SurfaceGeomechanics.SetRockCohesion()
            • SurfaceGeomechanics.computeChangeOfBasisMatrix()
            • SurfaceGeomechanics.computeNewCoordinates()
            • SurfaceGeomechanics.computeNewCoordinatesVector3()
            • SurfaceGeomechanics.computeNewCoordinatesVector6()
            • SurfaceGeomechanics.computeShearCapacityUtilization()
            • SurfaceGeomechanics.convertLocalToXYZBasisAttributes()
            • SurfaceGeomechanics.convertXYZToLocalBasisAttributes()
            • SurfaceGeomechanics.filterAttributesToConvert()
            • SurfaceGeomechanics.getAttributesToConvertFromLocalToXYZ()
            • SurfaceGeomechanics.getNormalTangentsVectors()
        • geos_posp.filters.TransferAttributesVolumeSurface module
          • TransferAttributesVolumeSurface
            • TransferAttributesVolumeSurface.FillInputPortInformation()
            • TransferAttributesVolumeSurface.GetAttributeNamesToTransfer()
            • TransferAttributesVolumeSurface.GetNewAttributeNames()
            • TransferAttributesVolumeSurface.RequestData()
            • TransferAttributesVolumeSurface.RequestDataObject()
            • TransferAttributesVolumeSurface.RequestInformation()
            • TransferAttributesVolumeSurface.SetAttributeNamesToTransfer()
            • TransferAttributesVolumeSurface.doTransferAttributes()
            • TransferAttributesVolumeSurface.getMeshMapping()
            • TransferAttributesVolumeSurface.m_attributeNames
            • TransferAttributesVolumeSurface.m_newAttributeNames
            • TransferAttributesVolumeSurface.m_outputSurfaceMesh
            • TransferAttributesVolumeSurface.m_surfaceMesh
            • TransferAttributesVolumeSurface.m_volumeMesh
            • TransferAttributesVolumeSurface.transferAttribute()
        • geos_posp.filters.VolumeSurfaceMeshMapper module
          • VolumeSurfaceMeshMapper
            • VolumeSurfaceMeshMapper.FillInputPortInformation()
            • VolumeSurfaceMeshMapper.GetAttributeName()
            • VolumeSurfaceMeshMapper.GetCreateAttribute()
            • VolumeSurfaceMeshMapper.GetSurfaceToVolumeConnectionSets()
            • VolumeSurfaceMeshMapper.GetVolumeToSurfaceConnectionSets()
            • VolumeSurfaceMeshMapper.RequestData()
            • VolumeSurfaceMeshMapper.RequestDataObject()
            • VolumeSurfaceMeshMapper.RequestInformation()
            • VolumeSurfaceMeshMapper.SetAttributeName()
            • VolumeSurfaceMeshMapper.SetCreateAttribute()
            • VolumeSurfaceMeshMapper.SetLogger()
            • VolumeSurfaceMeshMapper.createAttribute()
            • VolumeSurfaceMeshMapper.getAdjacentCells()
            • VolumeSurfaceMeshMapper.getCellIds()
            • VolumeSurfaceMeshMapper.getCellSide()
            • VolumeSurfaceMeshMapper.m_attributeName
            • VolumeSurfaceMeshMapper.m_createAttribute
            • VolumeSurfaceMeshMapper.m_logger
            • VolumeSurfaceMeshMapper.m_surfaceMesh
            • VolumeSurfaceMeshMapper.m_volumeMesh
      • pyvistaTools
        • geos_posp.pyvistaTools.pyvistaUtils module
          • getBlockByName()
          • loadDataSet()
    • Visualization
      • Paraview plugins
        • PVAttributeMapping plugin
        • PVCreateConstantAttributePerRegion plugin
        • PVExtractMergeBlocksVolume plugin
        • PVExtractMergeBlocksVolumeSurface plugin
        • PVExtractMergeBlocksVolumeSurfaceWell plugin
        • PVExtractMergeBlocksVolumeWell plugin
        • PVGeomechanicsAnalysis plugin
        • PVGeomechanicsWorkflowVolume plugin
        • PVGeomechanicsWorkflowVolumeSurface plugin
        • PVGeomechanicsWorkflowVolumeSurfaceWell plugin
        • PVGeomechanicsWorkflowVolumeWell plugin
        • PVplugins.PVMergeBlocksEnhanced module
        • PVMohrCirclePlot plugin
        • PVplugins.PVSurfaceGeomechanics module
        • PVTransferAttributesVolumeSurface plugin
      • Utilities
        • PVUtils Package
          • geos_posp.visu.PVUtils.DisplayOrganizationParaview module
            • DisplayOrganizationParaview
              • DisplayOrganizationParaview.RemoveViewFromLayout()
              • DisplayOrganizationParaview.SwapCellsInLayout()
              • DisplayOrganizationParaview.addLayout()
              • DisplayOrganizationParaview.addOneToCpt()
              • DisplayOrganizationParaview.addViewToLayout()
              • DisplayOrganizationParaview.getLayoutViews()
              • DisplayOrganizationParaview.getLayoutsKeys()
              • DisplayOrganizationParaview.getLayoutsNames()
              • DisplayOrganizationParaview.getNumberLayouts()
              • DisplayOrganizationParaview.getViewsCpt()
              • DisplayOrganizationParaview.getViewsName()
              • DisplayOrganizationParaview.initLayoutViews()
              • DisplayOrganizationParaview.initLayouts()
              • DisplayOrganizationParaview.removeLayout()
              • DisplayOrganizationParaview.updateOrganization()
            • buildNewLayoutWithPythonView()
          • geos_posp.visu.PVUtils.checkboxFunction module
            • createModifiedCallback()
          • geos_posp.visu.PVUtils.paraviewTreatments module
            • addDataframeColumnsToVtkPolyData()
            • dataframeForEachTimestep()
            • findSubArrayNames()
            • getArrayChoices()
            • getDataframesFromMultipleVTKSources()
            • getDatasFromSources()
            • getFilterInput()
            • getPossibleSourceNames()
            • getTimeStepIndex()
            • getVtkOriginalCellIds()
            • integrateSourceNames()
            • isFilter()
            • mergeDataframes()
            • mergeFilterPV()
            • strEnumToEnumerationDomainXml()
            • strListToEnumerationDomainXml()
            • usefulSourceNamesPipeline()
            • usefulVisibleDatasPipeline()
            • vtkPolyDataToPointsDataframe()
            • vtkTableToDataframe()
            • vtkToDataframe()
            • vtkUnstructuredGridCellsToDataframe()
          • geos_posp.visu.PVUtils.matplotlibOptions module
            • FontStyleEnum
              • FontStyleEnum.ITALIC
              • FontStyleEnum.NORMAL
              • FontStyleEnum.OBLIQUE
            • FontWeightEnum
              • FontWeightEnum.BOLD
              • FontWeightEnum.HEAVY
              • FontWeightEnum.LIGHT
              • FontWeightEnum.NORMAL
            • LegendLocationEnum
              • LegendLocationEnum.BEST
              • LegendLocationEnum.CENTER
              • LegendLocationEnum.CENTER_LEFT
              • LegendLocationEnum.CENTER_RIGHT
              • LegendLocationEnum.LOWER_CENTER
              • LegendLocationEnum.LOWER_LEFT
              • LegendLocationEnum.LOWER_RIGHT
              • LegendLocationEnum.UPPER_CENTER
              • LegendLocationEnum.UPPER_LEFT
              • LegendLocationEnum.UPPER_RIGHT
            • LineStyleEnum
              • LineStyleEnum.DASHDOT
              • LineStyleEnum.DASHED
              • LineStyleEnum.DOTTED
              • LineStyleEnum.NONE
              • LineStyleEnum.SOLID
            • MarkerStyleEnum
              • MarkerStyleEnum.CIRCLE
              • MarkerStyleEnum.DIAMOND
              • MarkerStyleEnum.NONE
              • MarkerStyleEnum.PLUS
              • MarkerStyleEnum.POINT
              • MarkerStyleEnum.SQUARE
              • MarkerStyleEnum.STAR
              • MarkerStyleEnum.TRIANGLE
              • MarkerStyleEnum.X
            • OptionSelectionEnum
            • optionEnumToXml()
        • Mohr’s Circle Package
          • geos_posp.visu.mohrCircles.functionsMohrCircle module
            • buildPythonViewScript()
            • createMohrCircleAtTimeStep()
            • createMohrCirclesFromPrincipalComponents()
            • createMohrCoulombEnvelope()
            • findAnnotateTuples()
            • getMohrCircleId()
          • geos_posp.visu.mohrCircles.plotMohrCircles module
            • createMohrCirclesFigure()
            • updateTitle()
  • GEOS Paraview plugins
    • Home
    • Processing
      • GeosLogReaderUtils functions
        • geos.pv.geosLogReaderUtils.GeosLogReaderAquifers module
          • GeosLogReaderAquifers
            • GeosLogReaderAquifers.calculateExtraValues()
            • GeosLogReaderAquifers.createDataframe()
            • GeosLogReaderAquifers.readAll()
            • GeosLogReaderAquifers.readAquiferNames()
            • GeosLogReaderAquifers.readPropertiesValues()
        • geos.pv.geosLogReaderUtils.geosLogReaderConvergence module
          • GeosLogReaderConvergence
            • GeosLogReaderConvergence.calculateExtraValues()
            • GeosLogReaderConvergence.createDataframe()
            • GeosLogReaderConvergence.readAll()
            • GeosLogReaderConvergence.readIterationsValues()
        • geos.pv.geosLogReaderUtils.GeosLogReaderFlow module
          • GeosLogReaderFlow
            • GeosLogReaderFlow.createDataframe()
            • GeosLogReaderFlow.readAll()
            • GeosLogReaderFlow.readComputeStatisticsName()
            • GeosLogReaderFlow.readPropertiesValues()
            • GeosLogReaderFlow.readRegionNames()
        • geos.pv.geosLogReaderUtils.GeosLogReaderFunctions module
          • buildPropertiesNameForComponents()
          • buildPropertiesNameForPhases()
          • buildPropertiesNameFromGeosProperties()
          • buildPropertiesNameNoPhases()
          • convertValues()
          • correctZeroValuesInListOfValues()
          • countNumberLines()
          • elementsAreInLog()
          • extractAquifer()
          • extractFirstIntFromString()
          • extractFloatsFromString()
          • extractLinearIter()
          • extractListIntsFromString()
          • extractNewtonIter()
          • extractPhaseId()
          • extractPhaseModel()
          • extractPropertiesFlow()
          • extractPropertiesWell()
          • extractRegion()
          • extractStatsName()
          • extractTimeAndDt()
          • extractValueAndNameAquifer()
          • extractValuesFlow()
          • extractValuesWell()
          • extractWell()
          • extractWellTags()
          • findNumberPhasesSimulation()
          • formatPropertyName()
          • identifyCurrentWell()
          • identifyProperties()
          • isFloat()
          • phaseNamesBuilder()
          • replaceSpecialCharactersWithWhitespace()
          • timeInSecond()
          • transformUserChoiceToListPhases()
        • geos.pv.geosLogReaderUtils.GeosLogReaderWells module
          • GeosLogReaderWells
            • GeosLogReaderWells.calculateMeanValues()
            • GeosLogReaderWells.createDataframe()
            • GeosLogReaderWells.initWellPropertiesValues()
            • GeosLogReaderWells.readAll()
            • GeosLogReaderWells.readPropertiesValues()
            • GeosLogReaderWells.readWellNames()
      • pyplotUtils functions
        • geos.pv.pyplotUtils.matplotlibOptions module
          • FontStyleEnum
            • FontStyleEnum.ITALIC
            • FontStyleEnum.NORMAL
            • FontStyleEnum.OBLIQUE
          • FontWeightEnum
            • FontWeightEnum.BOLD
            • FontWeightEnum.HEAVY
            • FontWeightEnum.LIGHT
            • FontWeightEnum.NORMAL
          • LegendLocationEnum
            • LegendLocationEnum.BEST
            • LegendLocationEnum.CENTER
            • LegendLocationEnum.CENTER_LEFT
            • LegendLocationEnum.CENTER_RIGHT
            • LegendLocationEnum.LOWER_CENTER
            • LegendLocationEnum.LOWER_LEFT
            • LegendLocationEnum.LOWER_RIGHT
            • LegendLocationEnum.UPPER_CENTER
            • LegendLocationEnum.UPPER_LEFT
            • LegendLocationEnum.UPPER_RIGHT
          • LineStyleEnum
            • LineStyleEnum.DASHDOT
            • LineStyleEnum.DASHED
            • LineStyleEnum.DOTTED
            • LineStyleEnum.NONE
            • LineStyleEnum.SOLID
          • MarkerStyleEnum
            • MarkerStyleEnum.CIRCLE
            • MarkerStyleEnum.DIAMOND
            • MarkerStyleEnum.NONE
            • MarkerStyleEnum.PLUS
            • MarkerStyleEnum.POINT
            • MarkerStyleEnum.SQUARE
            • MarkerStyleEnum.STAR
            • MarkerStyleEnum.TRIANGLE
            • MarkerStyleEnum.X
          • OptionSelectionEnum
          • optionEnumToXml()
      • Utilities
        • geos.pv.utils.checkboxFunction module
          • createModifiedCallback()
        • geos.pv.utils.DisplayOrganizationParaview module
          • DisplayOrganizationParaview
            • DisplayOrganizationParaview.RemoveViewFromLayout()
            • DisplayOrganizationParaview.SwapCellsInLayout()
            • DisplayOrganizationParaview.addLayout()
            • DisplayOrganizationParaview.addOneToCpt()
            • DisplayOrganizationParaview.addViewToLayout()
            • DisplayOrganizationParaview.getLayoutViews()
            • DisplayOrganizationParaview.getLayoutsKeys()
            • DisplayOrganizationParaview.getLayoutsNames()
            • DisplayOrganizationParaview.getNumberLayouts()
            • DisplayOrganizationParaview.getViewsCpt()
            • DisplayOrganizationParaview.getViewsName()
            • DisplayOrganizationParaview.initLayoutViews()
            • DisplayOrganizationParaview.initLayouts()
            • DisplayOrganizationParaview.removeLayout()
            • DisplayOrganizationParaview.updateOrganization()
          • buildNewLayoutWithPythonView()
        • geos.pv.utils.paraviewTreatments module
          • addDataframeColumnsToVtkPolyData()
          • dataframeForEachTimestep()
          • findSubArrayNames()
          • getArrayChoices()
          • getDataframesFromMultipleVTKSources()
          • getDatasFromSources()
          • getFilterInput()
          • getPossibleSourceNames()
          • getTimeStepIndex()
          • getVtkOriginalCellIds()
          • integrateSourceNames()
          • isFilter()
          • mergeDataframes()
          • mergeFilterPV()
          • strEnumToEnumerationDomainXml()
          • strListToEnumerationDomainXml()
          • usefulSourceNamesPipeline()
          • usefulVisibleDatasPipeline()
          • vtkPolyDataToPointsDataframe()
          • vtkTableToDataframe()
          • vtkToDataframe()
          • vtkUnstructuredGridCellsToDataframe()
    • Paraview readers
      • readers.PVGeosLogReader module
  • Time History Tools
    • commandLinePlotGen()
    • getHistorySeries()
    • isiterable()
  • GEOS Utilities
    • API
      • geos.utils.ConnectionSet module
        • ConnectionSet
          • ConnectionSet.addConnectedCells()
          • ConnectionSet.copy()
          • ConnectionSet.getCellIdRef()
          • ConnectionSet.getConnectedCellIds()
          • ConnectionSet.setCellIdRef()
          • ConnectionSet.setConnectedCellIds()
        • ConnectionSetCollection
          • ConnectionSetCollection.add()
          • ConnectionSetCollection.addMultiple()
          • ConnectionSetCollection.containsCellIdRef()
          • ConnectionSetCollection.containsEqual()
          • ConnectionSetCollection.discard()
          • ConnectionSetCollection.discardCellIdRef()
          • ConnectionSetCollection.get()
          • ConnectionSetCollection.getReversedConnectionSetCollection()
          • ConnectionSetCollection.replace()
          • ConnectionSetCollection.update()
      • geos.utils.enumUnits module
        • Density
          • Density.G_PER_CUBIC_CENTIMETER
          • Density.KG_PER_CUBIC_METER
          • Density.POUND_PER_BBL
        • Length
          • Length.FEET
          • Length.KILOMETER
          • Length.METER
          • Length.MILE
        • Mass
          • Mass.KG
          • Mass.MEGATON
          • Mass.POUND
          • Mass.TON
        • MassRate
          • MassRate.KG_PER_DAY
          • MassRate.KG_PER_HOUR
          • MassRate.KG_PER_SECOND
          • MassRate.MTPA
          • MassRate.TON_PER_DAY
        • NoUnit
          • NoUnit.SAME
        • Permeability
          • Permeability.DARCY
          • Permeability.MILLI_DARCY
          • Permeability.SQUARE_METER
        • Pressure
          • Pressure.BAR
          • Pressure.GPA
          • Pressure.KPA
          • Pressure.MPA
          • Pressure.PA
          • Pressure.PSI
        • Temperature
          • Temperature.CELSIUS
          • Temperature.FAHRENHEIT
          • Temperature.K
        • Time
          • Time.DAY
          • Time.HOUR
          • Time.MONTH
          • Time.SECOND
          • Time.YEAR
        • Unit
        • Volume
          • Volume.BBL
          • Volume.CUBIC_FEET
          • Volume.CUBIC_METER
        • VolumetricRate
          • VolumetricRate.BBL_PER_DAY
          • VolumetricRate.CUBIC_METER_PER_DAY
          • VolumetricRate.CUBIC_METER_PER_HOUR
          • VolumetricRate.CUBIC_METER_PER_SECOND
        • convert()
        • enumerationDomainUnit()
        • getPropertyUnitEnum()
        • getSIUnits()
      • geos.utils.geometryFunctions module
        • computeCoordinatesInNewBasis()
        • computePlaneFrom3Points()
        • getCellSideAgainstPlane()
        • getChangeOfBasisMatrix()
        • getPointSideAgainstPlane()
      • geos.utils.GeosOutputsConstants module
        • AttributeEnum
        • ComponentNameEnum
          • ComponentNameEnum.NONE
          • ComponentNameEnum.NORMAL_TANGENTS
          • ComponentNameEnum.XYZ
        • FluidPrefixEnum
          • FluidPrefixEnum.FLUID
          • FluidPrefixEnum.GAS
          • FluidPrefixEnum.WATER
        • GeosDomainNameEnum
          • GeosDomainNameEnum.FAULT_DOMAIN_NAME
          • GeosDomainNameEnum.VOLUME_DOMAIN_NAME
          • GeosDomainNameEnum.WELL_DOMAIN_NAME
        • GeosLogOutputsEnum
          • GeosLogOutputsEnum.PHASE
        • GeosMeshOutputsEnum
          • GeosMeshOutputsEnum.BULK_MODULUS
          • GeosMeshOutputsEnum.CELL_ID
          • GeosMeshOutputsEnum.DELTA_PRESSURE
          • GeosMeshOutputsEnum.DISPLACEMENT_JUMP
          • GeosMeshOutputsEnum.ELEMENT_CENTER
          • GeosMeshOutputsEnum.GRAIN_BULK_MODULUS
          • GeosMeshOutputsEnum.MASS
          • GeosMeshOutputsEnum.PERMEABILITY
          • GeosMeshOutputsEnum.POINT
          • GeosMeshOutputsEnum.POINTS_ID
          • GeosMeshOutputsEnum.POROSITY
          • GeosMeshOutputsEnum.POROSITY_INI
          • GeosMeshOutputsEnum.PRESSURE
          • GeosMeshOutputsEnum.ROCK_DENSITY
          • GeosMeshOutputsEnum.SHEAR_MODULUS
          • GeosMeshOutputsEnum.STRESS_EFFECTIVE
          • GeosMeshOutputsEnum.TOTAL_DISPLACEMENT
          • GeosMeshOutputsEnum.TRACTION
          • GeosMeshOutputsEnum.VTK_ORIGINAL_CELL_ID
          • GeosMeshOutputsEnum.WATER_DENSITY
        • GeosMeshSuffixEnum
          • GeosMeshSuffixEnum.BIOT_COEFFICIENT_SUFFIX
          • GeosMeshSuffixEnum.BULK_MODULUS_SUFFIX
          • GeosMeshSuffixEnum.DENSITY_SUFFIX
          • GeosMeshSuffixEnum.GRAIN_BULK_MODULUS_SUFFIX
          • GeosMeshSuffixEnum.PERMEABILITY_SUFFIX
          • GeosMeshSuffixEnum.PHASE_DENSITY_SUFFIX
          • GeosMeshSuffixEnum.PHASE_FRACTION_SUFFIX
          • GeosMeshSuffixEnum.PHASE_MASS_DENSITY_SUFFIX
          • GeosMeshSuffixEnum.PHASE_VISCOSITY_SUFFIX
          • GeosMeshSuffixEnum.POROSITY_REF_SUFFIX
          • GeosMeshSuffixEnum.POROSITY_SUFFIX
          • GeosMeshSuffixEnum.SHEAR_MODULUS_SUFFIX
          • GeosMeshSuffixEnum.STRAIN_SUFFIX
          • GeosMeshSuffixEnum.STRESS_SUFFIX
          • GeosMeshSuffixEnum.SURFACE_MINUS_SUFFIX
          • GeosMeshSuffixEnum.SURFACE_PLUS_SUFFIX
        • OutputObjectEnum
          • OutputObjectEnum.FAULTS
          • OutputObjectEnum.VOLUME
          • OutputObjectEnum.WELLS
        • PHASE_SEP
        • PhaseTypeEnum
          • PhaseTypeEnum.FLUID
          • PhaseTypeEnum.ROCK
          • PhaseTypeEnum.UNKNOWN
        • PostProcessingOutputsEnum
          • PostProcessingOutputsEnum.ADJACENT_CELL_SIDE
          • PostProcessingOutputsEnum.BIOT_COEFFICIENT
          • PostProcessingOutputsEnum.BIOT_COEFFICIENT_INITIAL
          • PostProcessingOutputsEnum.BLOCK_INDEX
          • PostProcessingOutputsEnum.BULK_MODULUS_INITIAL
          • PostProcessingOutputsEnum.COMPRESSIBILITY
          • PostProcessingOutputsEnum.COMPRESSIBILITY_OED
          • PostProcessingOutputsEnum.COMPRESSIBILITY_REAL
          • PostProcessingOutputsEnum.CRITICAL_PORE_PRESSURE
          • PostProcessingOutputsEnum.CRITICAL_PORE_PRESSURE_THRESHOLD
          • PostProcessingOutputsEnum.CRITICAL_TOTAL_STRESS_RATIO
          • PostProcessingOutputsEnum.LITHOSTATIC_STRESS
          • PostProcessingOutputsEnum.OEDOMETRIC_MODULUS
          • PostProcessingOutputsEnum.POISSON_RATIO
          • PostProcessingOutputsEnum.POISSON_RATIO_INITIAL
          • PostProcessingOutputsEnum.RSP_OED
          • PostProcessingOutputsEnum.RSP_REAL
          • PostProcessingOutputsEnum.SCU
          • PostProcessingOutputsEnum.SHEAR_MODULUS_INITIAL
          • PostProcessingOutputsEnum.SPECIFIC_GRAVITY
          • PostProcessingOutputsEnum.STRAIN_ELASTIC
          • PostProcessingOutputsEnum.STRESS_EFFECTIVE_INITIAL
          • PostProcessingOutputsEnum.STRESS_EFFECTIVE_RATIO_OED
          • PostProcessingOutputsEnum.STRESS_EFFECTIVE_RATIO_REAL
          • PostProcessingOutputsEnum.STRESS_TOTAL
          • PostProcessingOutputsEnum.STRESS_TOTAL_DELTA
          • PostProcessingOutputsEnum.STRESS_TOTAL_INITIAL
          • PostProcessingOutputsEnum.STRESS_TOTAL_RATIO_REAL
          • PostProcessingOutputsEnum.TOTAL_STRESS_RATIO_THRESHOLD
          • PostProcessingOutputsEnum.YOUNG_MODULUS
          • PostProcessingOutputsEnum.YOUNG_MODULUS_INITIAL
        • getAttributeToConvertFromLocalToXYZ()
        • getAttributeToTransferFromInitialTime()
        • getRockSuffixRenaming()
      • geos.utils.algebraFunctions module
        • getAttributeMatrixFromVector()
        • getAttributeVectorFromMatrix()
      • geos.utils.Logger module
        • CustomLoggerFormatter
          • CustomLoggerFormatter.FORMATS_COLOR
          • CustomLoggerFormatter.FORMATS_PLAIN
          • CustomLoggerFormatter.bold_red
          • CustomLoggerFormatter.format()
          • CustomLoggerFormatter.format1
          • CustomLoggerFormatter.format2
          • CustomLoggerFormatter.format_results
          • CustomLoggerFormatter.green
          • CustomLoggerFormatter.grey
          • CustomLoggerFormatter.red
          • CustomLoggerFormatter.reset
          • CustomLoggerFormatter.yellow
        • getLogger()
        • results()
      • geos.utils.PhysicalConstants module
        • DEFAULT_FRICTION_ANGLE_DEG
        • DEFAULT_FRICTION_ANGLE_RAD
        • DEFAULT_GRAIN_BULK_MODULUS
        • DEFAULT_ROCK_COHESION
        • EPSILON
        • GRAVITY
        • WATER_DENSITY
        • WATER_DYNAMIC_VISCOSITY
        • WATER_KINEMATIC_VISCOSITY
      • geos.utils.UnitRepository module
        • UnitRepository
          • UnitRepository.getPropertiesUnit()
          • UnitRepository.initPropertiesUnit()
  • GEOS XML Tools
    • convert_abaqus
      • Named Arguments
    • format_xml
      • Positional Arguments
      • Named Arguments
    • check_xml_attribute_coverage
      • Named Arguments
    • check_xml_redundancy
      • Named Arguments
    • API
      • check_mpi_rank()
      • format_geosx_arguments()
      • preprocess_parallel()
      • preprocess_serial()
      • wait_for_file_write_rank_0()
      • apply_regex_to_node()
      • generate_random_name()
      • merge_included_xml_files()
      • merge_xml_nodes()
      • process()
      • validate_xml()
      • format_attribute()
      • format_file()
      • format_xml_level()
      • main()
      • UnitManager
        • UnitManager.buildUnits()
        • UnitManager.regexHandler()
      • Pattern | Example targets | Notes
      • DictRegexHandler
      • SymbolicMathRegexHandler()
      • check_redundancy_level()
      • check_xml_redundancy()
      • main()
      • process_xml_files()
      • collect_xml_attributes()
      • collect_xml_attributes_level()
      • main()
      • parse_schema()
      • parse_schema_element()
      • process_xml_files()
      • write_attribute_usage_xml()
      • write_attribute_usage_xml_level()
      • read_GEOS_table()
      • write_GEOS_table()
      • write_read_GEOS_table_example()
  • GEOS XML VIEWER
    • Consol scripts
      • geos-exporter
        • Named Arguments
      • geos-modifier
        • Named Arguments
      • geos-splitter
        • Named Arguments
      • geos-viewer
        • Named Arguments
    • WIP consol scripts
      • geos-validate
        • Named Arguments
    • vtk filter
      • Geos deck reader
        • GeosDeckReader
          • GeosDeckReader.GetAttributeName()
          • GeosDeckReader.GetFileName()
          • GeosDeckReader.RequestData()
          • GeosDeckReader.SetAttributeName()
          • GeosDeckReader.SetFileName()
    • Paraview plugin
      • Geos Deck Reader
    • Utilities
      • geos_xml_viewer.algorithms.deck
        • SimulationDeck
          • SimulationDeck.file_path
          • SimulationDeck.xml_root
        • TreeViewNodeType
          • TreeViewNodeType.PERFORATION
          • TreeViewNodeType.PROPERTIES
          • TreeViewNodeType.REPRESENTATION
          • TreeViewNodeType.TIMESERIES
          • TreeViewNodeType.UNKNOWN
          • TreeViewNodeType.WELLBORECHANNEL
          • TreeViewNodeType.WELLBORECOMPLETION
          • TreeViewNodeType.WELLBOREFRAME
          • TreeViewNodeType.WELLBOREMARKER
          • TreeViewNodeType.WELLBORETRAJECTORY
        • build_model()
        • format_attribute()
        • format_deck()
        • format_xml()
        • format_xml_level()
        • numpy_to_vtk()
        • read()
      • geos_xml_viewer.algorithms.write_wells
        • CellLocator
          • CellLocator.locate()
        • filter_connections()
        • locate_connections()
        • sort_connections()
        • translate_connections()
        • write_fluxes()
        • write_solver()
  • PyGEOS Tools
    • API
      • Wrapper
        • allgather_wrapper()
        • find_first_difference_between_wrapper_paths()
        • gather_wrapper()
        • get_all_matching_wrapper_paths()
        • get_global_value_range()
        • get_matching_wrapper_path()
        • get_wrapper()
        • get_wrapper_par()
        • plot_history()
        • print_global_value_range()
        • run_queries()
        • search_datastructure_wrappers_recursive()
        • set_wrapper_to_value()
        • set_wrapper_with_function()
      • File IO
        • load_tables()
        • save_tables()
      • Mesh Interpolation
        • apply_to_bins()
        • extrapolate_nan_values()
        • get_random_realization()
        • get_realizations()
      • Well Log
        • convert_E_nu_to_K_G()
        • estimate_shmin()
        • parse_las()
    • Acquisition library
      • Acquisition
        • Acquisition
          • Acquisition.acquisition_method()
          • Acquisition.getMesh()
          • Acquisition.getSourceCenter()
          • Acquisition.limitedAperture()
          • Acquisition.loadMesh()
          • Acquisition.setMesh()
          • Acquisition.splitAcquisition()
      • EquispacedAcquisition
        • EQUISPACEDAcquisition
          • EQUISPACEDAcquisition.acquisition_method()
      • SegyAcquisition
        • SEGYAcquisition
          • SEGYAcquisition.acquisition_method()
      • Shot
        • Receiver
          • Receiver.coords
        • ReceiverSet
          • ReceiverSet.list
          • ReceiverSet.number
          • ReceiverSet.append()
          • ReceiverSet.getReceiver()
          • ReceiverSet.getReceiverCoords()
          • ReceiverSet.keepReceiversWithinBounds()
        • Shot
          • Shot.source
          • Shot.receivers
          • Shot.flag
          • Shot.id
          • Shot.mesh
          • Shot.xml
          • Shot.getMesh()
          • Shot.getReceiverCoords()
          • Shot.getReceiverList()
          • Shot.getSourceCoords()
          • Shot.getSourceList()
          • Shot.loadMesh()
          • Shot.setMesh()
          • Shot.setXml()
        • ShotPoint
          • ShotPoint.coords
          • ShotPoint.getPosition()
          • ShotPoint.isinBounds()
          • ShotPoint.setCoordinate()
          • ShotPoint.setPosition()
          • ShotPoint.x
          • ShotPoint.y
          • ShotPoint.z
        • ShotPointSet
          • ShotPointSet.list
          • ShotPointSet.number
          • ShotPointSet.append()
          • ShotPointSet.appendSet()
          • ShotPointSet.getList()
          • ShotPointSet.updateList()
        • Source
          • Source.coords
        • SourceSet
          • SourceSet.list
          • SourceSet.number
          • SourceSet.append()
          • SourceSet.getCenter()
          • SourceSet.getSource()
          • SourceSet.getSourceCoords()
    • Input
      • GeosxArgs
        • GeosxAbbrevOption
          • GeosxAbbrevOption.abbrvDict
          • GeosxAbbrevOption.getAbbrv()
          • GeosxAbbrevOption.getAllAbbrv()
        • GeosxArgs
          • GeosxArgs.cmdline
          • GeosxArgs.options
          • GeosxArgs.getCommandLine()
          • GeosxArgs.optionsParser()
          • GeosxArgs.updateArg()
      • Xml
        • XML
          • XML.buildCouplingSolvers()
          • XML.buildXMLTimes()
          • XML.exportToXml()
          • XML.getAttribute()
          • XML.getCellBlocks()
          • XML.getConstitutivePhases()
          • XML.getMeshName()
          • XML.getMeshObject()
          • XML.getOutputTargets()
          • XML.getPorosityNames()
          • XML.getSolverDiscretizations()
          • XML.getSolverNames()
          • XML.getSolverTargetRegions()
          • XML.getSolverTypeDependantParameters()
          • XML.getSolverTypes()
          • XML.getSourcesAndReceivers()
          • XML.getXMLTimes()
          • XML.processIncludes()
          • XML.updateGeometry()
          • XML.updateMesh()
          • XML.updateSolvers()
    • Mesh
      • InternalMesh
        • InternalMesh
          • InternalMesh.xml
          • InternalMesh.bounds
          • InternalMesh.nx
          • InternalMesh.ny
          • InternalMesh.nz
          • InternalMesh.order
          • InternalMesh.cellBlockNames
          • InternalMesh.cellBounds
          • InternalMesh.elementTypes
          • InternalMesh.numberOfCells
          • InternalMesh.numberOfPoints
          • InternalMesh.fieldSpecifications
      • VtkMesh
        • VTKMesh
          • VTKMesh.meshfile
          • VTKMesh.vtktype
          • VTKMesh.bounds
          • VTKMesh.numberOfPoints
          • VTKMesh.numberOfCells
          • VTKMesh.isSet
          • VTKMesh.hasLocator
          • VTKMesh.export()
          • VTKMesh.extractMesh()
          • VTKMesh.getArray()
          • VTKMesh.getBounds()
          • VTKMesh.getCellContainingPoint()
          • VTKMesh.getCellData()
          • VTKMesh.getExtractToGlobalMap()
          • VTKMesh.getGlobalIds()
          • VTKMesh.getNumberOfBlocks()
          • VTKMesh.getNumberOfCells()
          • VTKMesh.getNumberOfPoints()
          • VTKMesh.getPointData()
          • VTKMesh.getSubAx()
          • VTKMesh.interpolateValues()
          • VTKMesh.read()
          • VTKMesh.updateCellLocator()
          • VTKMesh.updateMeshProperties()
        • VTKSubMesh
          • VTKSubMesh.meshfile
          • VTKSubMesh.vtktype
          • VTKSubMesh.bounds
          • VTKSubMesh.numberOfPoints
          • VTKSubMesh.numberOfCells
          • VTKSubMesh.isSet
    • Model
      • pyevtk_tools
        • cGlobalIds()
        • connectivity()
        • pGlobalIds()
        • structuredToVTK()
        • unstructuredGridToVTK()
        • writeParallelVTKGrid()
        • x_y_z()
        • xyz()
      • SepModel
        • SEPBin
          • SEPBin.dataFormat
          • SEPBin.bin
          • SEPBin.head
          • SEPBin.n
          • SEPBin.dataType
          • SEPBin.data
          • SEPBin.copy()
          • SEPBin.copyRawData()
          • SEPBin.getModel()
          • SEPBin.read()
          • SEPBin.reshapeData()
          • SEPBin.write()
        • SEPBlock
          • SEPBlock.gModel
          • SEPBlock.header
          • SEPBlock.bin
          • SEPBlock.nijk
          • SEPBlock.nblocks
          • SEPBlock.imin
          • SEPBlock.imax
          • SEPBlock.n
          • SEPBlock.bmin
          • SEPBlock.gln
          • SEPBlock.glmin
          • SEPBlock.getGlobalNumberOfElements()
          • SEPBlock.getGlobalOrigin()
        • SEPHeader
          • SEPHeader.head
          • SEPHeader.bin
          • SEPHeader.data_format
          • SEPHeader.esize
          • SEPHeader.order
          • SEPHeader.SEPParser()
          • SEPHeader.convertToSEPDict()
          • SEPHeader.copy()
          • SEPHeader.correctBinPath()
          • SEPHeader.getBounds()
          • SEPHeader.getHeaderAsStr()
          • SEPHeader.getLabels()
          • SEPHeader.getNumberOfElements()
          • SEPHeader.getOrigin()
          • SEPHeader.getStepSizes()
          • SEPHeader.parseListToSEPDict()
          • SEPHeader.parseStringToSEPDict()
          • SEPHeader.read()
          • SEPHeader.setLabels()
          • SEPHeader.setNumberOfElements()
          • SEPHeader.setOrigin()
          • SEPHeader.write()
        • SEPModel
          • SEPModel.header
          • SEPModel.bin
          • SEPModel.copy()
          • SEPModel.createAllBlocks()
          • SEPModel.export()
          • SEPModel.getBinInfos()
          • SEPModel.getBlock()
          • SEPModel.getBounds()
          • SEPModel.getGlobalNumberOfElements()
          • SEPModel.getGlobalOrigin()
          • SEPModel.getHeaderInfos()
          • SEPModel.getMaxValue()
          • SEPModel.getMinAndMaxValues()
          • SEPModel.getMinValue()
          • SEPModel.getModel()
          • SEPModel.getNumberOfElements()
          • SEPModel.getSlice()
          • SEPModel.getStepSizes()
      • VtkModel
        • PVTKModel
          • PVTKModel.filename
          • PVTKModel.rootname
          • PVTKModel.pvtktype
          • PVTKModel.vtkfiles
          • PVTKModel.vtkmodels
          • PVTKModel.cellInfo
          • PVTKModel.pointInfo
          • PVTKModel.starts
          • PVTKModel.ends
          • PVTKModel.nblocks
          • PVTKModel.nbltot
          • PVTKModel.n
          • PVTKModel.addBlockInfo()
          • PVTKModel.addBlockModel()
          • PVTKModel.addCellInfo()
          • PVTKModel.addPointInfo()
          • PVTKModel.addSourceInfo()
          • PVTKModel.export()
          • PVTKModel.getAllBlocksIndices()
          • PVTKModel.getBlocksEnds()
          • PVTKModel.getBlocksStarts()
          • PVTKModel.getCellInfo()
          • PVTKModel.getData()
          • PVTKModel.getPointInfo()
          • PVTKModel.getReader()
          • PVTKModel.getSourceFilesFromHeader()
          • PVTKModel.getSources()
          • PVTKModel.readHeader()
          • PVTKModel.setNumberOfBlocks()
          • PVTKModel.setWholeExtent()
          • PVTKModel.writeParallelFile()
        • VTKModel
          • VTKModel.filename
          • VTKModel.rootname
          • VTKModel.vtktype
          • VTKModel.cellData
          • VTKModel.pointData
          • VTKModel.cgids
          • VTKModel.pgids
          • VTKModel.bmin
          • VTKModel.glmin
          • VTKModel.n
          • VTKModel.gln
          • VTKModel.d
          • VTKModel.vertices
          • VTKModel.ctype
          • VTKModel.addCellData()
          • VTKModel.addPointData()
          • VTKModel.export()
          • VTKModel.getCellGlobalIds()
          • VTKModel.getIndexMax()
          • VTKModel.getIndexMin()
          • VTKModel.getPointGlobalIds()
          • VTKModel.getReader()
          • VTKModel.setCellGlobalIds()
          • VTKModel.setCellsType()
          • VTKModel.setGlobalNumberOfElements()
          • VTKModel.setGlobalOrigin()
          • VTKModel.setNumberOfElements()
          • VTKModel.setOrigin()
          • VTKModel.setPointGlobalIds()
          • VTKModel.setStepSize()
          • VTKModel.setVertices()
        • VTSModel
          • VTSModel.filename
          • VTSModel.rootname
          • VTSModel.vtktype
          • VTSModel.cellData
          • VTSModel.pointData
          • VTSModel.reader
          • VTSModel.cgids
          • VTSModel.pgids
          • VTSModel.bmin
          • VTSModel.glmin
          • VTSModel.n
          • VTSModel.gln
          • VTSModel.d
          • VTSModel.vertices
          • VTSModel.export()
          • VTSModel.setVertices()
        • VTUModel
          • VTUModel.filename
          • VTUModel.rootname
          • VTUModel.vtktype
          • VTUModel.cellData
          • VTUModel.pointData
          • VTUModel.reader
          • VTUModel.cgids
          • VTUModel.pgids
          • VTUModel.bmin
          • VTUModel.glmin
          • VTUModel.n
          • VTUModel.gln
          • VTUModel.d
          • VTUModel.vertices
          • VTUModel.ctype
          • VTUModel.connectivity
          • VTUModel.offsets
          • VTUModel.export()
          • VTUModel.setConnectivity()
          • VTUModel.setVertices()
    • Output
      • SEGYTraceOutput
        • SEGYTraceOutput
          • SEGYTraceOutput.format
          • SEGYTraceOutput.directory
          • SEGYTraceOutput.rootname
          • SEGYTraceOutput.data
          • SEGYTraceOutput.time
          • SEGYTraceOutput.export()
      • SeismicTraceOutput
        • SeismicTraceOutput
          • SeismicTraceOutput.data
          • SeismicTraceOutput.format
          • SeismicTraceOutput.export()
      • SEPTraceOutput
        • SEPTraceOutput
          • SEPTraceOutput.format
          • SEPTraceOutput.directory
          • SEPTraceOutput.rootname
          • SEPTraceOutput.head
          • SEPTraceOutput.data
          • SEPTraceOutput.time
          • SEPTraceOutput.gdata
          • SEPTraceOutput.export()
          • SEPTraceOutput.gather()
    • Solvers
      • Solver
        • Solver
          • Solver.alreadyInitialized
          • Solver.collections
          • Solver.collectionsTargets
          • Solver.dt
          • Solver.geosx
          • Solver.geosxArgs
          • Solver.hdf5Outputs
          • Solver.hdf5Targets
          • Solver.maxTime
          • Solver.meshName
          • Solver.minTime
          • Solver.name
          • Solver.timeVariables
          • Solver.type
          • Solver.vtkOutputs
          • Solver.vtkTargets
          • Solver.xml
          • Solver.applyInitialConditions()
          • Solver.bcastFieldFor1RegionWith1CellBlock()
          • Solver.cleanup()
          • Solver.execute()
          • Solver.filterGhostRankFor1RegionWith1CellBlock()
          • Solver.finalize()
          • Solver.gatherFieldFor1RegionWith1CellBlock()
          • Solver.getAllGeosWrapperByName()
          • Solver.getCollections()
          • Solver.getDiscretization()
          • Solver.getDt()
          • Solver.getElementCenterFor1RegionWith1CellBlock()
          • Solver.getElementCenterZFor1RegionWith1CellBlock()
          • Solver.getGeosWrapperByName()
          • Solver.getGeosWrapperByTargetKey()
          • Solver.getGeosx()
          • Solver.getGhostRankFor1RegionWith1CellBlock()
          • Solver.getHdf5Outputs()
          • Solver.getLocalToGlobalMapFor1RegionWith1CellBlock()
          • Solver.getMaxTime()
          • Solver.getMeshName()
          • Solver.getMinTime()
          • Solver.getName()
          • Solver.getSolverFieldWithPrefix()
          • Solver.getTargetRegions()
          • Solver.getTimeVariables()
          • Solver.getType()
          • Solver.getVtkOutputs()
          • Solver.initialize()
          • Solver.outputVtk()
          • Solver.reinitSolver()
          • Solver.setDt()
          • Solver.setDtFromTimeVariable()
          • Solver.setGeosWrapperValueByName()
          • Solver.setGeosWrapperValueByTargetKey()
          • Solver.setHdf5OutputsName()
          • Solver.setMaxTime()
          • Solver.setMinTime()
          • Solver.setTimeVariable()
          • Solver.setVtkOutputsName()
          • Solver.setXml()
          • Solver.updateDiscretization()
          • Solver.updateMeshName()
          • Solver.updateOutputs()
          • Solver.updateSolverGroup()
          • Solver.updateSolverName()
          • Solver.updateTargetRegions()
          • Solver.updateTimeVariables()
      • WaveSolver
        • WaveSolver
          • WaveSolver.dtSeismo
          • WaveSolver.dtWaveField
          • WaveSolver.minTime
          • WaveSolver.maxTime
          • WaveSolver.minTimeSim
          • WaveSolver.maxTimeSim
          • WaveSolver.sourceType
          • WaveSolver.sourceFreq
          • WaveSolver.evaluateSource()
          • WaveSolver.filterSource()
          • WaveSolver.getVelocityModel()
          • WaveSolver.initialize()
          • WaveSolver.outputWaveField()
          • WaveSolver.setSourceAndReceivers()
          • WaveSolver.setSourceFrequency()
          • WaveSolver.setSourceValue()
          • WaveSolver.updateSourceProperties()
      • AcousticSolver
        • AcousticSolver
          • AcousticSolver.modelForGradient
          • AcousticSolver.computePartialGradientFor1RegionWith1CellBlock()
          • AcousticSolver.getFullPressureAtReceivers()
          • AcousticSolver.getFullWaveFieldAtReceivers()
          • AcousticSolver.getModelForGradient()
          • AcousticSolver.getPartialGradientFor1RegionWith1CellBlock()
          • AcousticSolver.getPressureAtReceivers()
          • AcousticSolver.getWaveField()
          • AcousticSolver.resetPressureAtReceivers()
          • AcousticSolver.resetWaveField()
          • AcousticSolver.setModelForGradient()
          • AcousticSolver.updateDensityModel()
          • AcousticSolver.updateVelocityModel()
          • AcousticSolver.updateVelocityModelFromHDF5()
      • ElasticSolver
        • ElasticSolver
          • ElasticSolver.getAllDisplacementAtReceivers()
          • ElasticSolver.getDASSignalAtReceivers()
          • ElasticSolver.getDisplacementAtReceivers()
          • ElasticSolver.getWaveField()
          • ElasticSolver.initialize()
          • ElasticSolver.resetDisplacementAtReceivers()
          • ElasticSolver.resetWaveField()
          • ElasticSolver.updateDensityModel()
          • ElasticSolver.updateVelocityModel()
      • GeomechanicsSolver
        • GeomechanicsSolver
          • GeomechanicsSolver.getBulkModulus()
          • GeomechanicsSolver.getConstitutiveModelData()
          • GeomechanicsSolver.getDensities()
          • GeomechanicsSolver.getShearModulus()
          • GeomechanicsSolver.getStresses()
          • GeomechanicsSolver.getTotalDisplacement()
          • GeomechanicsSolver.initialize()
      • ReservoirSolver
        • ReservoirSolver
          • ReservoirSolver.getDeltaPressures()
          • ReservoirSolver.getPhaseVolumeFractions()
          • ReservoirSolver.getPorosities()
          • ReservoirSolver.getPressures()
    • Driving a reservoir simulation with Pygeos
      • XML file and initialization of Solver object
      • Iterations process and simulation end
      • How to run that script
      • To go further
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