Source code for geos.pygeos_tools.mesh_interpolation

import numpy as np
from scipy import stats  # type: ignore[import]
from typing import Dict, Iterable, List, Tuple, Callable, Union




def apply_to_bins( fn: Callable[ [ Union[ float, np.ndarray ] ], float ],
                   position: np.ndarray,
                   value: np.ndarray,
                   bins: np.ndarray,
                   collapse_edges: bool = True ):
    """
    Apply a function to values that are located within a series of bins
    Note: if a bin is empty, this function will fill a nan value

    Args:
        fn (function): Function that takes a single scalar or array input
        position (np.ndarray): A 1D list/array describing the location of each sample
        value (np.ndarray): A 1D list/array of values at each location
        bins (np.ndarray): The bin edges for the position data
        collapse_edges (bool): Controls the behavior of edge-data (default=True)

    Returns:
        np.ndarray: an array of function results for each bin
    """
    # Sort values into bins
    Nr = len( bins ) + 1
    Ibin = np.digitize( position, bins )

    if collapse_edges:
        Nr -= 2
        Ibin -= 1
        Ibin[ Ibin == -1 ] = 0
        Ibin[ Ibin == Nr ] = Nr - 1

    # Apply functions to bins
    binned_values = np.zeros( Nr )
    for ii in range( Nr ):
        tmp = ( Ibin == ii )
        if np.sum( tmp ):
            binned_values[ ii ] = fn( value[ tmp ] )
        else:
            # Empty bin
            binned_values[ ii ] = np.NaN

    return binned_values





def extrapolate_nan_values( x, y, slope_scale=0.0 ):
    """
    Fill in any nan values in two 1D arrays by extrapolating

    Args:
        x (np.ndarray): 1D list/array of positions
        y (np.ndarray): 1D list/array of values
        slope_scale (float): value to scale the extrapolation slope (default=0.0)

    Returns:
        np.ndarray: The input array with nan values replaced by extrapolated data
    """
    Inan = np.isnan( y )
    reg = stats.linregress( x[ ~Inan ], y[ ~Inan ] )
    y[ Inan ] = reg[ 0 ] * x[ Inan ] * slope_scale + reg[ 1 ]
    return y





def get_random_realization( x, bins, value, rand_fill=0, rand_scale=0, slope_scale=0 ):
    """
    Get a random realization for a noisy signal with a set of bins

    Args:
        x (np.ndarray): 1D list/array of positions
        bins (np.ndarray): 1D list/array of bin edges
        value (np.ndarray): 1D list/array of values
        rand_fill (float): The standard deviation to use where data is not defined (default=0)
        rand_scale (float): Value to scale the standard deviation for the realization (default=0)
        slope_scale (float): Value to scale the extrapolation slope (default=0.0)

    Returns:
        np.ndarray: An array containing the random realization
    """
    y_mean = apply_to_bins( np.mean, x, value, bins )
    y_std = apply_to_bins( np.std, x, value, bins )

    # Extrapolate to fill the upper/lower bounds
    x_mid = bins[ :-1 ] + 0.5 * ( bins[ 1 ] - bins[ 0 ] )
    y_mean = extrapolate_nan_values( x_mid, y_mean, slope_scale )
    y_std[ np.isnan( y_std ) ] = rand_fill

    # Add a random perturbation to the target value to match missing high/lows
    y_final = y_mean + ( rand_scale * y_std * np.random.randn( len( y_mean ) ) )
    return y_final





def get_realizations( x, bins, targets ):
    """
    Get random realizations for noisy signals on target bins

    Args:
        x (np.ndarray): 1D list/array of positions
        bins (np.ndarray): 1D list/array of bin edges
        targets (dict): Dict of geosx target keys, inputs to get_random_realization

    Returns:
        dict: Dictionary of random realizations

    """
    results = {}
    for k, t in targets.items():
        results[ k ] = get_random_realization( x, bins, **t )
    return results