The MeshGeneratorBase class provides an abstract base class implementation for different mesh types. The MeshGeneratorBase is the Group specialization for different type of mesh handling. More...

#include <MeshGeneratorBase.hpp>

Inheritance diagram for geosx::MeshGeneratorBase:

[legend]

Public Types
using	CatalogInterface = dataRepository::CatalogInterface< MeshGeneratorBase, std::string const &, Group *const >
	using alias for templated Catalog meshGenerator type

Public Types inherited from geosx::dataRepository::Group
using	subGroupMap = MappedVector< Group, Group *, keyType, indexType >
	The template specialization of MappedVector to use for the collection of sub-Group objects.

using	wrapperMap = MappedVector< WrapperBase, WrapperBase *, keyType, indexType >
	The template specialization of MappedVector to use for the collection wrappers objects.

using	CatalogInterface = dataRepository::CatalogInterface< Group, std::string const &, Group *const >
	Type alias for catalog interface used by this class. See CatalogInterface.

Public Member Functions
	MeshGeneratorBase (std::string const &name, Group *const parent)
	Main constructor for MeshGenerator base class. More...

virtual	~MeshGeneratorBase ()
	Destructor for MeshGenerator.

virtual void	GenerateElementRegions (DomainPartition &domain)=0
	Generate the Element regions for an input Domain. More...

virtual void	GenerateMesh (DomainPartition *const domain)=0
	Generate the mesh object the input mesh object. More...

virtual void	GetElemToNodesRelationInBox (const std::string &elementType, const int index[], const int &iEle, int nodeIDInBox[], const int size)=0
	Get the label mapping of element vertices indexes onto node indexes for a type of element. More...

virtual void	RemapMesh (dataRepository::Group *const domain)=0
	Re-computing mesh tables for the input domain. More...

Public Member Functions inherited from geosx::dataRepository::Group
	Group (std::string const &name, Group *const parent)
	Constructor. More...

	Group (Group &&source)
	Move constructor. More...

virtual	~Group ()
	Destructor, deletes all Groups and Wrappers owned by this Group.

	Group ()=delete
	Deleted default constructor.

	Group (Group const &)=delete
	Deleted copy constructor.

	Group (Group const &&)=delete
	Deleted move constructor.

Group &	operator= (Group const &)=delete
	Deleted copy assignment operator. More...

Group &	operator= (Group &&)=delete
	Deleted move assignment operator. More...

virtual const std::type_info &	get_typeid () const
	Get typeid for current group. More...

bool	CheckTypeID (std::type_info const &typeToCheck) const
	Check a type_info against the type_info of this Group. More...

void	PrintDataHierarchy (integer indent=0)
	Prints the data hierarchy recursively. More...

string	dumpInputOptions () const

template<typename T = Group>
T *	RegisterGroup (std::string const &name, std::unique_ptr< T > newObject)
	Register a new Group as a sub-group of current Group. More...

template<typename T = Group>
T *	RegisterGroup (std::string const &name, T *newObject)
	Register a new Group as a sub-group of current Group. More...

template<typename T = Group>
T *	RegisterGroup (std::string const &name)
	Register a new Group as a sub-group of current Group. More...

template<typename T = Group>
T *	RegisterGroup (subGroupMap::KeyIndex const &keyIndex)
	Register a new Group as a sub-group of current Group. More...

template<typename T = Group, typename TBASE = Group>
T *	RegisterGroup (std::string const &name, std::string const &catalogName)
	Register a new Group as a sub-group of current Group. More...

void	deregisterGroup (std::string const &name)
	Removes a child group from this group. More...

virtual Group *	CreateChild (string const &childKey, string const &childName)
	Creates a new sub-Group using the ObjectCatalog functionality. More...

template<typename T = Group>
T *	GetGroup (localIndex index)
	Retrieve a sub-group from the current Group using an index. More...

template<typename T = Group>
T const *	GetGroup (localIndex index) const
	Retrieve a sub-group from the current Group using an index. More...

template<typename T = Group>
T *	GetGroup (string const &name)
	Retrieve a sub-group from the current Group using a string. More...

template<typename T = Group>
T const *	GetGroup (string const &name) const
	Retrieve a sub-group from the current Group using a string. More...

template<typename T = Group>
T &	getGroupReference (string const &key)

template<typename T = Group>
T const &	getGroupReference (string const &key) const

template<typename T = Group>
T &	GetGroupReference (subGroupMap::KeyIndex const &key)

template<typename T = Group>
T const &	GetGroupReference (subGroupMap::KeyIndex const &key) const

template<typename T = Group>
T *	GetGroup (subGroupMap::KeyIndex const &key)
	Retrieve a sub-group from the current Group using a KeyIndexT. More...

template<typename T = Group>
T const *	GetGroup (subGroupMap::KeyIndex const &key) const
	Retrieve a sub-group from the current Group using a KeyIndexT. More...

template<typename T = Group>
T *	GetGroupByPath (string const &path)
	Retrieve a group from the hierarchy using a path. More...

template<typename T = Group>
T const *	GetGroupByPath (string const &path) const
	Retrieve a group from the hierarchy using a path. More...

subGroupMap &	GetSubGroups ()
	Get the subgroups object. More...

subGroupMap const &	GetSubGroups () const
	Get the subgroups object. More...

localIndex	numSubGroups () const
	return the number of sub groups in this Group More...

bool	hasGroup (std::string const &name) const
	Check whether a sub-group exists. More...

template<typename GROUPTYPE = Group, typename ... GROUPTYPES, typename LAMBDA >
void	forSubGroups (LAMBDA lambda)
	Apply the given functor to subgroups that can be casted to one of specified types. More...

template<typename GROUPTYPE = Group, typename ... GROUPTYPES, typename LAMBDA >
void	forSubGroups (LAMBDA lambda) const
	Apply the given functor to subgroups that can be casted to one of specified types. More...

template<typename GROUPTYPE = Group, typename ... GROUPTYPES, typename LOOKUP_CONTAINER , typename LAMBDA >
void	forSubGroups (LOOKUP_CONTAINER const &subGroupKeys, LAMBDA lambda)

template<typename GROUPTYPE = Group, typename ... GROUPTYPES, typename LOOKUP_CONTAINER , typename LAMBDA >
void	forSubGroups (LOOKUP_CONTAINER const &subGroupKeys, LAMBDA lambda) const

template<typename LAMBDA >
void	forWrappers (LAMBDA lambda)
	Apply the given functor to wrappers. More...

template<typename LAMBDA >
void	forWrappers (LAMBDA lambda) const
	Apply the given functor to wrappers. More...

template<typename TYPE , typename ... TYPES, typename LAMBDA >
void	forWrappers (LAMBDA lambda)
	Apply the given functor to wrappers that can be cast to one of specified types. More...

template<typename TYPE , typename ... TYPES, typename LAMBDA >
void	forWrappers (LAMBDA lambda) const
	Apply the given functor to wrappers that can be cast to one of specified types. More...

void	Initialize (Group *const group)
	Run initialization functions on this and all subgroups. More...

virtual void	InitializationOrder (string_array &order)
	Sets the initialization order for sub-Groups. More...

void	InitializePostInitialConditions (Group *const group)
	Initialization routine to be called after calling ApplyInitialConditions(). More...

void	postRestartInitializationRecursive (Group *const domain)
	Initialization routine to be called after calling reading a restart file. More...

void	ProcessInputFileRecursive (xmlWrapper::xmlNode &targetNode)
	Recursively read values using ProcessInputFile() from the input file and put them into the wrapped values for this group. More...

void	PostProcessInputRecursive ()
	Recursively call PostProcessInput() to apply post processing after reading input values.

template<typename T , typename TBASE = T>
Wrapper< TBASE > *	registerWrapper (std::string const &name, wrapperMap::KeyIndex::index_type *const rkey=nullptr)
	Create and register a Wrapper around a new object. More...

template<typename T , typename TBASE = T>
Wrapper< TBASE > *	registerWrapper (Group::wrapperMap::KeyIndex const &viewKey)

template<typename T >
Wrapper< T > *	registerWrapper (std::string const &name, std::unique_ptr< T > newObject)
	Register a Wrapper around a given object and take ownership. More...

template<typename T >
Wrapper< T > *	registerWrapper (std::string const &name, T *newObject)
	Register a Wrapper around an existing object, does not take ownership of the object. More...

WrapperBase *	registerWrapper (string const &name, std::unique_ptr< WrapperBase > wrapper)
	Register and take ownership of an existing Wrapper. More...

void	deregisterWrapper (string const &name)
	Removes a Wrapper from this group. More...

void	GenerateDataStructureSkeleton (integer const level)
	Build a complete datastructure for schema generation. More...

virtual void	ExpandObjectCatalogs ()
	Expand any catalogs in the data structure.

virtual void	SetSchemaDeviations (xmlWrapper::xmlNode schemaRoot, xmlWrapper::xmlNode schemaParent, integer documentationType)
	Inform the schema generator of any deviations between the xml and GEOS data structures. More...

virtual void	RegisterDataOnMeshRecursive (Group *const meshBodies)
	Calls RegisterDataOnMesh() recursively. More...

virtual void	RegisterDataOnMesh (Group *const meshBodies)
	Register data on mesh entities. More...

virtual localIndex	PackSize (string_array const &wrapperNames, integer const recursive, bool on_device=false) const
	Get the size required to pack a list of wrappers. More...

virtual localIndex	PackSize (string_array const &wrapperNames, arrayView1d< localIndex const > const &packList, integer const recursive, bool on_device=false) const
	Get the size required to pack a list of indices within a list of wrappers. More...

virtual localIndex	Pack (buffer_unit_type *&buffer, string_array const &wrapperNames, integer const recursive, bool on_device=false) const
	Pack a list of wrappers to a buffer. More...

virtual localIndex	Pack (buffer_unit_type *&buffer, string_array const &wrapperNames, arrayView1d< localIndex const > const &packList, integer const recursive, bool on_device=false) const
	Pack a list of indices within a list of wrappers. More...

virtual localIndex	Unpack (buffer_unit_type const *&buffer, arrayView1d< localIndex > &packList, integer const recursive, bool on_device=false)
	Unpack a buffer. More...

WrapperBase const *	getWrapperBase (indexType const index) const
	Retrieve a WrapperBase stored in this group. More...

WrapperBase *	getWrapperBase (indexType const index)
	Retrieve a WrapperBase stored in this group. More...

WrapperBase const *	getWrapperBase (std::string const &name) const
	Retrieve a WrapperBase stored in this group. More...

WrapperBase *	getWrapperBase (std::string const &name)
	Retrieve a WrapperBase stored in this group. More...

WrapperBase const *	getWrapperBase (wrapperMap::KeyIndex const &keyIndex) const
	Retrieve a WrapperBase stored in this group. More...

WrapperBase *	getWrapperBase (wrapperMap::KeyIndex const &keyIndex)
	Retrieve a WrapperBase stored in this group. More...

indexType	getWrapperIndex (std::string const &name) const

wrapperMap const &	wrappers () const
	Get access to the internal wrapper storage. More...

wrapperMap &	wrappers ()
	Get access to the internal wrapper storage. More...

template<typename LOOKUP_TYPE >
bool	hasWrapper (LOOKUP_TYPE const &lookup) const
	Check if a wrapper exists. More...

template<typename T , typename LOOKUP_TYPE >
Wrapper< T > const *	getWrapper (LOOKUP_TYPE const &index) const
	Retrieve a Wrapper stored in this group. More...

template<typename T , typename LOOKUP_TYPE >
Wrapper< T > *	getWrapper (LOOKUP_TYPE const &index)
	Retrieve a Wrapper stored in this group. More...

template<typename T >
Wrapper< T > const *	getWrapper (char const *const key) const
	Retrieve a Wrapper stored in this group. More...

template<typename T >
Wrapper< T > *	getWrapper (char const *const key)
	Retrieve a Wrapper stored in this group. More...

template<typename T , typename LOOKUP_TYPE >
GEOSX_DECLTYPE_AUTO_RETURN	getReference (LOOKUP_TYPE const &lookup) const
	Look up a wrapper and get reference to wrapped object. More...

template<typename T , typename LOOKUP_TYPE >
T &	getReference (LOOKUP_TYPE const &lookup)
	Look up a wrapper and get reference to wrapped object. More...

template<typename T >
GEOSX_DECLTYPE_AUTO_RETURN	getReference (char const *const name) const

template<typename T >
T &	getReference (char const *const name)

virtual void	resize (localIndex const newSize)
	Resize the group and all contained wrappers that resize with parent. More...

virtual void	reserve (indexType const newsize)
	Set the new capacity and reserve it in all wrappers that resize with parent. More...

localIndex	capacity () const
	Get the "capacity" of the group, which determines the capacity of resizable wrappers. More...

localIndex	size () const
	Get the "size" of the group, which determines the number of elements in resizable wrappers. More...

const string	getName () const
	Get group name. More...

Group *	getParent ()
	Access the group's parent. More...

Group const *	getParent () const
	Access the group's parent. More...

localIndex	getIndexInParent () const
	Get the group's index withing its parent group. More...

integer	sizedFromParent () const
	Check whether this Group is resized when its parent is resized. More...

Group *	setSizedFromParent (int val)
	Set whether this wrapper is resized when its parent is resized. More...

RestartFlags	getRestartFlags () const
	Get flags that control restart output of this group. More...

void	setRestartFlags (RestartFlags flags)
	Set flags that control restart output of this group. More...

InputFlags	getInputFlags () const
	Get input flags for schema generation. More...

void	setInputFlags (InputFlags flags)
	Set input flags for schema generation. More...

conduit::Node &	getConduitNode ()
	Get the Conduit node object associated with this group. More...

void	prepareToWrite ()
	Register the group and its wrappers with Conduit.

void	finishWriting ()
	Write the group and its wrappers into Conduit.

void	loadFromConduit ()
	Read the group and its wrappers from Conduit.

void	enableLogLevelInput ()
	Enable verbosity input for object.

integer	getLogLevel () const

template<typename T >
T	group_cast ()
	Downcast this Group. More...

template<typename T >
T	group_cast () const
	Downcast this Group. More...

Static Public Member Functions
static string	CatalogName ()
	Return the name of the MeshGenerator in object catalog. More...

static CatalogInterface::CatalogType &	GetCatalog ()
	Accessor for the singleton Catalog object. More...

Static Public Member Functions inherited from geosx::dataRepository::Group
template<typename T0 , typename T1 , typename ... CASTTYPES, typename CONTAINERTYPE , typename LAMBDA >
static bool	applyLambdaToContainer (CONTAINERTYPE &container, LAMBDA &&lambda)
	Apply a given functor to a container if the container can be cast to one of the specified types. More...

static CatalogInterface::CatalogType &	GetCatalog ()
	Get the singleton catalog for this class. More...

template<typename T >
static T	group_cast (Group *group)
	Downcast a Group *. More...

template<typename T >
static T	group_cast (Group const *group)
	Downcast a Group const *. More...

Public Attributes
int	m_delayMeshDeformation = 0
	Integer to trigger or not mesh re-mapping at the end of GenerateMesh call.

Additional Inherited Members
Protected Member Functions inherited from geosx::dataRepository::Group
virtual void	PostProcessInput ()

virtual void	InitializePreSubGroups (Group *const group)
	Called by Initialize() prior to initializing sub-Groups. More...

virtual void	InitializePostSubGroups (Group *const group)
	Called by Initialize() after to initializing sub-Groups. More...

virtual void	InitializePostInitialConditions_PreSubGroups (Group *const group)
	Called by InitializePostInitialConditions() prior to initializing sub-Groups. More...

virtual void	InitializePostInitialConditions_PostSubGroups (Group *const group)
	Called by InitializePostInitialConditions() after to initializing sub-Groups. More...

virtual void	postRestartInitialization (Group *const domain)
	Performs initialization required after reading from a restart file. More...

Detailed Description

The MeshGeneratorBase class provides an abstract base class implementation for different mesh types. The MeshGeneratorBase is the Group specialization for different type of mesh handling.

Definition at line 40 of file MeshGeneratorBase.hpp.

Constructor & Destructor Documentation

◆ MeshGeneratorBase()

geosx::MeshGeneratorBase::MeshGeneratorBase	(	std::string const &	name,
		Group *const	parent
	)

explicit

Main constructor for MeshGenerator base class.

Parameters

[in]	name	of the MeshGenerator object
[in]	parent	the parent Group pointer for the MeshGenerator object

Member Function Documentation

◆ CatalogName()

static string geosx::MeshGeneratorBase::CatalogName ( )

inlinestatic

Return the name of the MeshGenerator in object catalog.

Returns: string that contains the catalog name of the MeshGenerator

Definition at line 62 of file MeshGeneratorBase.hpp.

◆ GenerateElementRegions()

virtual void geosx::MeshGeneratorBase::GenerateElementRegions ( DomainPartition & domain )

pure virtual

Generate the Element regions for an input Domain.

Parameters

[in,out] domain the Domain object on which to generate Element regions

Implemented in geosx::InternalMeshGenerator, geosx::InternalWellGenerator, and geosx::PAMELAMeshGenerator.

◆ GenerateMesh()

virtual void geosx::MeshGeneratorBase::GenerateMesh ( DomainPartition *const domain )

pure virtual

Generate the mesh object the input mesh object.

Parameters

[in] domain the domain partition from which to construct the mesh object

Implemented in geosx::InternalWellGenerator, geosx::InternalMeshGenerator, and geosx::PAMELAMeshGenerator.

◆ GetCatalog()

static CatalogInterface::CatalogType& geosx::MeshGeneratorBase::GetCatalog ( )

static

Accessor for the singleton Catalog object.

Returns: a static reference to the Catalog object

◆ GetElemToNodesRelationInBox()

virtual void geosx::MeshGeneratorBase::GetElemToNodesRelationInBox	(	const std::string &	elementType,
		const int	index[],
		const int &	iEle,
		int	nodeIDInBox[],
		const int	size
	)

pure virtual

Get the label mapping of element vertices indexes onto node indexes for a type of element.

Parameters

[in]	elementType	the string identifier of the element type
[in]	index	ndim-sptialized Element index.
[in]	iEle	the index of Element begin processed
[out]	nodeIDInBox	array to map element vertices index to node indexes
[in]	size	the number of node on the element

Implemented in geosx::InternalMeshGenerator, and geosx::PAMELAMeshGenerator.

◆ RemapMesh()

virtual void geosx::MeshGeneratorBase::RemapMesh ( dataRepository::Group *const domain )

pure virtual

Re-computing mesh tables for the input domain.

Parameters

[in] domain domain point whose mesh has to be remapped

Implemented in geosx::InternalWellGenerator, geosx::InternalMeshGenerator, and geosx::PAMELAMeshGenerator.

The documentation for this class was generated from the following file:

coreComponents/meshUtilities/MeshGeneratorBase.hpp

Public Types

Public Member Functions

Static Public Member Functions

Public Attributes

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

◆ MeshGeneratorBase()

Member Function Documentation

◆ CatalogName()

◆ GenerateElementRegions()

◆ GenerateMesh()

◆ GetCatalog()

◆ GetElemToNodesRelationInBox()

◆ RemapMesh()