#include <SiloOutput.hpp>
Inheritance diagram for geosx::SiloOutput:
Public Member Functions | |
| SiloOutput (string const &name, Group *const parent) | |
| Constructor. More... | |
| virtual | ~SiloOutput () override |
| Destructor. | |
| virtual bool | execute (real64 const time_n, real64 const dt, integer const cycleNumber, integer const eventCounter, real64 const eventProgress, DomainPartition &domain) override |
| Writes out a Silo plot file. More... | |
| virtual void | cleanup (real64 const time_n, integer const cycleNumber, integer const eventCounter, real64 const eventProgress, DomainPartition &domain) override |
| Writes out a Silo plot file at the end of the simulation. More... | |
 Public Member Functions inherited from geosx::OutputBase | |
| OutputBase (string const &name, Group *const parent) | |
| Constructor. More... | |
| virtual | ~OutputBase () override |
| Destructor. | |
| virtual void | setupDirectoryStructure () |
| Method for setting up output directories. | |
| string | childDirectory () const |
| Get the path of the child directory where output will be written. More... | |
| integer | parallelThreads () const |
| Get the number of parallel threads to use to write plotfiles. More... | |
| Public Member Functions inherited from geosx::ExecutableGroup | |
| virtual void | signalToPrepareForExecution (real64 const time_n, real64 const dt, integer const cycle, DomainPartition &domain) |
| Inform the object that it expects to execute during the next timestep. More... | |
| virtual real64 | getTimestepRequest (real64 const time) |
| Supplies the timestep request for this target to the event manager. More... | |
| void | setTimestepBehavior (integer const behavior) |
| Set the timestep behavior for a target. More... | |
| integer | getTimestepBehavior () |
| Get the target's time step behavior. More... | |
| Public Member Functions inherited from geosx::dataRepository::Group | |
| virtual bool | registerCallback (void *func, const std::type_info &funcType) |
| Register a callback function on the group. More... | |
| Group (string const &name, Group *const parent) | |
| Constructor. More... | |
| Group (string const &name, conduit::Node &rootNode) | |
| Constructor. More... | |
| Group (Group &&source)=default | |
| Move constructor. More... | |
| virtual | ~Group () |
| Destructor, deletes all Groups and Wrappers owned by this Group. | |
| Group ()=delete | |
| Deleted default constructor. | |
| Group (Group const &)=delete | |
| Deleted copy constructor. | |
| Group & | operator= (Group const &)=delete |
| Deleted copy assignment operator. More... | |
| Group & | operator= (Group &&)=delete |
| Deleted move assignment operator. More... | |
| void | printDataHierarchy (integer indent=0) |
| Prints the data hierarchy recursively. More... | |
| string | dumpInputOptions () const |
| template<typename T = Group> | |
| T & | registerGroup (string const &name, std::unique_ptr< T > newObject) |
| Register a new Group as a sub-group of current Group. More... | |
| template<typename T = Group> | |
| T & | registerGroup (string const &name, T *newObject) |
| Register a new Group as a sub-group of current Group. More... | |
| template<typename T = Group> | |
| T & | registerGroup (string const &name) |
| Register a new Group as a sub-group of current Group. More... | |
| template<typename T = Group> | |
| T & | registerGroup (subGroupMap::KeyIndex const &keyIndex) |
| Register a new Group as a sub-group of current Group. More... | |
| template<typename T = Group, typename TBASE = Group> | |
| T & | registerGroup (string const &name, string const &catalogName) |
| Register a new Group as a sub-group of current Group. More... | |
| void | deregisterGroup (string const &name) |
| Removes a child group from this group. More... | |
| virtual Group * | createChild (string const &childKey, string const &childName) |
| Creates a new sub-Group using the ObjectCatalog functionality. More... | |
| template<typename T = Group, typename KEY = void> | |
| T * | getGroupPointer (KEY const &key) |
| Return a pointer to a sub-group of the current Group. More... | |
| template<typename T = Group, typename KEY = void> | |
| T const * | getGroupPointer (KEY const &key) const |
| Return a pointer to a sub-group of the current Group. More... | |
| template<typename T = Group, typename KEY = void> | |
| T & | getGroup (KEY const &key) |
| Return a reference to a sub-group of the current Group. More... | |
| template<typename T = Group, typename KEY = void> | |
| T const & | getGroup (KEY const &key) const |
| Return a reference to a sub-group of the current Group. More... | |
| template<typename T = Group> | |
| T & | getGroupByPath (string const &path) |
| Retrieve a group from the hierarchy using a path. More... | |
| template<typename T = Group> | |
| T const & | getGroupByPath (string const &path) const |
| Retrieve a group from the hierarchy using a path. More... | |
| subGroupMap & | getSubGroups () |
| Get the subgroups object. More... | |
| subGroupMap const & | getSubGroups () const |
| Get the subgroups object. More... | |
| localIndex | numSubGroups () const |
| return the number of sub groups in this Group More... | |
| template<typename T = Group> | |
| bool | hasGroup (string const &name) const |
| Check whether a sub-group exists. More... | |
| template<typename GROUPTYPE = Group, typename ... GROUPTYPES, typename LAMBDA > | |
| void | forSubGroups (LAMBDA &&lambda) |
| Apply the given functor to subgroups that can be casted to one of specified types. More... | |
| template<typename GROUPTYPE = Group, typename ... GROUPTYPES, typename LAMBDA > | |
| void | forSubGroups (LAMBDA &&lambda) const |
| Apply the given functor to subgroups that can be casted to one of specified types. More... | |
| template<typename GROUPTYPE = Group, typename ... GROUPTYPES, typename LOOKUP_CONTAINER , typename LAMBDA > | |
| void | forSubGroups (LOOKUP_CONTAINER const &subGroupKeys, LAMBDA &&lambda) |
| template<typename GROUPTYPE = Group, typename ... GROUPTYPES, typename LOOKUP_CONTAINER , typename LAMBDA > | |
| void | forSubGroups (LOOKUP_CONTAINER const &subGroupKeys, LAMBDA &&lambda) const |
| template<typename LAMBDA > | |
| void | forWrappers (LAMBDA &&lambda) |
| Apply the given functor to wrappers. More... | |
| template<typename LAMBDA > | |
| void | forWrappers (LAMBDA &&lambda) const |
| Apply the given functor to wrappers. More... | |
| template<typename TYPE , typename ... TYPES, typename LAMBDA > | |
| void | forWrappers (LAMBDA &&lambda) |
| Apply the given functor to wrappers that can be cast to one of specified types. More... | |
| template<typename TYPE , typename ... TYPES, typename LAMBDA > | |
| void | forWrappers (LAMBDA &&lambda) const |
| Apply the given functor to wrappers that can be cast to one of specified types. More... | |
| void | initialize () |
| Run initialization functions on this and all subgroups. More... | |
| virtual void | initializationOrder (string_array &order) |
| Sets the initialization order for sub-Groups. More... | |
| void | initializePostInitialConditions () |
| Initialization routine to be called after calling ApplyInitialConditions(). More... | |
| void | postRestartInitializationRecursive () |
| Initialization routine to be called after calling reading a restart file. More... | |
| void | processInputFileRecursive (xmlWrapper::xmlNode &targetNode) |
| Recursively read values using ProcessInputFile() from the input file and put them into the wrapped values for this group. More... | |
| void | postProcessInputRecursive () |
| Recursively call postProcessInput() to apply post processing after reading input values. | |
| template<typename T , typename TBASE = T> | |
| Wrapper< TBASE > & | registerWrapper (string const &name, wrapperMap::KeyIndex::index_type *const rkey=nullptr) |
| Create and register a Wrapper around a new object. More... | |
| template<typename T , typename TBASE = T> | |
| Wrapper< TBASE > & | registerWrapper (Group::wrapperMap::KeyIndex const &viewKey) |
| template<typename T > | |
| Wrapper< T > & | registerWrapper (string const &name, std::unique_ptr< T > newObject) |
| Register a Wrapper around a given object and take ownership. More... | |
| template<typename T > | |
| Wrapper< T > & | registerWrapper (string const &name, T *newObject) |
| Register a Wrapper around an existing object, does not take ownership of the object. More... | |
| WrapperBase & | registerWrapper (string const &name, std::unique_ptr< WrapperBase > wrapper) |
| Register and take ownership of an existing Wrapper. More... | |
| void | deregisterWrapper (string const &name) |
| Removes a Wrapper from this group. More... | |
| void | generateDataStructureSkeleton (integer const level) |
| Build a complete datastructure for schema generation. More... | |
| virtual void | expandObjectCatalogs () |
| Expand any catalogs in the data structure. | |
| virtual void | setSchemaDeviations (xmlWrapper::xmlNode schemaRoot, xmlWrapper::xmlNode schemaParent, integer documentationType) |
| Inform the schema generator of any deviations between the xml and GEOS data structures. More... | |
| virtual void | registerDataOnMeshRecursive (Group &meshBodies) |
| Calls RegisterDataOnMesh() recursively. More... | |
| virtual void | registerDataOnMesh (Group &meshBodies) |
| Register data on mesh entities. More... | |
| virtual localIndex | packSize (string_array const &wrapperNames, integer const recursive, bool onDevice, parallelDeviceEvents &events) const |
| Get the size required to pack a list of wrappers. More... | |
| virtual localIndex | packSize (string_array const &wrapperNames, arrayView1d< localIndex const > const &packList, integer const recursive, bool onDevice, parallelDeviceEvents &events) const |
| Get the size required to pack a list of indices within a list of wrappers. More... | |
| virtual localIndex | pack (buffer_unit_type *&buffer, string_array const &wrapperNames, integer const recursive, bool onDevice, parallelDeviceEvents &events) const |
| Pack a list of wrappers to a buffer. More... | |
| virtual localIndex | pack (buffer_unit_type *&buffer, string_array const &wrapperNames, arrayView1d< localIndex const > const &packList, integer const recursive, bool onDevice, parallelDeviceEvents &events) const |
| Pack a list of indices within a list of wrappers. More... | |
| virtual localIndex | unpack (buffer_unit_type const *&buffer, arrayView1d< localIndex > &packList, integer const recursive, bool onDevice, parallelDeviceEvents &events) |
| Unpack a buffer. More... | |
| template<typename KEY > | |
| WrapperBase const & | getWrapperBase (KEY const &key) const |
| Return a reference to a WrapperBase stored in this group. More... | |
| template<typename KEY > | |
| WrapperBase & | getWrapperBase (KEY const &key) |
| Return a reference to a WrapperBase stored in this group. More... | |
| indexType | getWrapperIndex (string const &name) const |
| wrapperMap const & | wrappers () const |
| Get access to the internal wrapper storage. More... | |
| wrapperMap & | wrappers () |
| Get access to the internal wrapper storage. More... | |
| indexType | numWrappers () const |
| Return the number of wrappers. More... | |
| template<typename LOOKUP_TYPE > | |
| bool | hasWrapper (LOOKUP_TYPE const &lookup) const |
| Check if a wrapper exists. More... | |
| template<typename T , typename LOOKUP_TYPE > | |
| Wrapper< T > const & | getWrapper (LOOKUP_TYPE const &index) const |
| Retrieve a Wrapper stored in this group. More... | |
| template<typename T , typename LOOKUP_TYPE > | |
| Wrapper< T > & | getWrapper (LOOKUP_TYPE const &index) |
| Retrieve a Wrapper stored in this group. More... | |
| template<typename T , typename LOOKUP_TYPE > | |
| Wrapper< T > const * | getWrapperPointer (LOOKUP_TYPE const &index) const |
| Retrieve a Wrapper stored in this group. More... | |
| template<typename T , typename LOOKUP_TYPE > | |
| Wrapper< T > * | getWrapperPointer (LOOKUP_TYPE const &index) |
| Retrieve a Wrapper stored in this group. More... | |
| template<typename T , typename LOOKUP_TYPE > | |
| GEOSX_DECLTYPE_AUTO_RETURN | getReference (LOOKUP_TYPE const &lookup) const |
| Look up a wrapper and get reference to wrapped object. More... | |
| template<typename T , typename LOOKUP_TYPE > | |
| T & | getReference (LOOKUP_TYPE const &lookup) |
| Look up a wrapper and get reference to wrapped object. More... | |
| virtual void | resize (localIndex const newSize) |
| Resize the group and all contained wrappers that resize with parent. More... | |
| virtual void | reserve (indexType const newsize) |
| Set the new capacity and reserve it in all wrappers that resize with parent. More... | |
| localIndex | capacity () const |
| Get the "capacity" of the group, which determines the capacity of resizable wrappers. More... | |
| localIndex | size () const |
| Get the "size" of the group, which determines the number of elements in resizable wrappers. More... | |
| string const & | getName () const |
| Get group name. More... | |
| string | getPath () const |
| Return the path of this Group in the data repository. More... | |
| Group & | getParent () |
| Access the group's parent. More... | |
| Group const & | getParent () const |
| Access the group's parent. More... | |
| localIndex | getIndexInParent () const |
| Get the group's index withing its parent group. More... | |
| integer | sizedFromParent () const |
| Check whether this Group is resized when its parent is resized. More... | |
| Group & | setSizedFromParent (int val) |
| Set whether this wrapper is resized when its parent is resized. More... | |
| RestartFlags | getRestartFlags () const |
| Get flags that control restart output of this group. More... | |
| void | setRestartFlags (RestartFlags flags) |
| Set flags that control restart output of this group. More... | |
| InputFlags | getInputFlags () const |
| Get input flags for schema generation. More... | |
| void | setInputFlags (InputFlags flags) |
| Set input flags for schema generation. More... | |
| conduit::Node & | getConduitNode () |
| Return the Conduit node object associated with this group. More... | |
| conduit::Node const & | getConduitNode () const |
| Return the Conduit node object associated with this group. More... | |
| void | prepareToWrite () |
| Register the group and its wrappers with Conduit. | |
| void | finishWriting () |
| Write the group and its wrappers into Conduit. | |
| void | loadFromConduit () |
| Read the group and its wrappers from Conduit. | |
| void | enableLogLevelInput () |
| Enable verbosity input for object. | |
| integer | getLogLevel () const |
Static Public Member Functions | |
| static string | catalogName () |
| Catalog name interface. More... | |
| Static Public Member Functions inherited from geosx::OutputBase | |
| static string | catalogName () |
| Catalog name interface. More... | |
| static void | setOutputDirectory (string const &outputDir) |
| Setter for the output directory. More... | |
| static string | getOutputDirectory () |
| Getter for the output directory. More... | |
| static void | setFileNameRoot (string const &root) |
| Setter for the file name root. More... | |
| static string | getFileNameRoot () |
| Getter for the file name root. More... | |
| Static Public Member Functions inherited from geosx::dataRepository::Group | |
| template<typename T0 , typename T1 , typename ... CASTTYPES, typename CONTAINERTYPE , typename LAMBDA > | |
| static bool | applyLambdaToContainer (CONTAINERTYPE &container, LAMBDA &&lambda) |
| Apply a given functor to a container if the container can be cast to one of the specified types. More... | |
| static CatalogInterface::CatalogType & | getCatalog () |
| Get the singleton catalog for this class. More... | |
Additional Inherited Members | |
| Public Types inherited from geosx::dataRepository::Group | |
| using | subGroupMap = MappedVector< Group, Group *, keyType, indexType > |
| The template specialization of MappedVector to use for the collection of sub-Group objects. | |
| using | wrapperMap = MappedVector< WrapperBase, WrapperBase *, keyType, indexType > |
| The template specialization of MappedVector to use for the collection wrappers objects. | |
| using | CatalogInterface = dataRepository::CatalogInterface< Group, string const &, Group *const > |
| Type alias for catalog interface used by this class. See CatalogInterface. | |
| Protected Member Functions inherited from geosx::OutputBase | |
| virtual void | initializePreSubGroups () override |
| Do initialization prior to calling initialization operations on the subgroups. More... | |
| Protected Member Functions inherited from geosx::dataRepository::Group | |
| virtual void | postProcessInput () |
| virtual void | initializePostSubGroups () |
| Called by Initialize() after to initializing sub-Groups. | |
| virtual void | initializePostInitialConditionsPreSubGroups () |
| Called by InitializePostInitialConditions() prior to initializing sub-Groups. | |
| virtual void | initializePostInitialConditionsPostSubGroups () |
| Called by InitializePostInitialConditions() after to initializing sub-Groups. | |
| virtual void | postRestartInitialization () |
| Performs initialization required after reading from a restart file. | |
Detailed Description
A class for creating silo-based outputs
Definition at line 33 of file SiloOutput.hpp.
Constructor & Destructor Documentation
◆ SiloOutput()
Constructor.
- Parameters
-
name The name of this Group. parent The parent Group.
Member Function Documentation
◆ catalogName()
|
inlinestatic |
Catalog name interface.
- Returns
- This type's catalog name
Definition at line 47 of file SiloOutput.hpp.
◆ cleanup()
|
inlineoverridevirtual |
Writes out a Silo plot file at the end of the simulation.
Called as the code exits the main run loop.
- Parameters
-
[in] time_n current time level [in] cycleNumber global cycle number [in] eventCounter index of event that triggered execution [in] eventProgress fractional progress in current cycle [in,out] domain the physical domain
Reimplemented from geosx::ExecutableGroup.
Definition at line 64 of file SiloOutput.hpp.
◆ execute()
|
overridevirtual |
Writes out a Silo plot file.
Implements geosx::ExecutableGroup.
The documentation for this class was generated from the following file:
- coreComponents/fileIO/Outputs/SiloOutput.hpp
