This class provides an interface to ObjectManagerBase in order to manage edge data. More...

#include <EdgeManager.hpp>

Inheritance diagram for geosx::EdgeManager:

Classes
struct	viewKeyStruct
	Container of keys needed to access the data of the class member. More...

Public Types
using	NodeMapType = FixedOneToManyRelation
	EdgeToNode map type.

using	FaceMapType = InterObjectRelation< ArrayOfSets< localIndex > >
	EdgeToFace map type.

Public Types inherited from geosx::ObjectManagerBase
using	CatalogInterface = dataRepository::CatalogInterface< ObjectManagerBase, string const &, dataRepository::Group *const >
	Nested type for the `factory` pattern, defining the base class (ObjectManagerBase) and the builder arguments (string const &, dataRepository::Group * const) of the derived products.

Public Types inherited from geosx::dataRepository::Group
using	subGroupMap = MappedVector< Group, Group *, keyType, indexType >
	The template specialization of MappedVector to use for the collection of sub-Group objects.

using	wrapperMap = MappedVector< WrapperBase, WrapperBase *, keyType, indexType >
	The template specialization of MappedVector to use for the collection wrappers objects.

using	CatalogInterface = dataRepository::CatalogInterface< Group, string const &, Group *const >
	Type alias for catalog interface used by this class. See CatalogInterface.

Public Member Functions
virtual void	resize (localIndex const newSize) override
	Resize the EdgeManager object and all it members. More...

void	setDomainBoundaryObjects (FaceManager const &referenceObject)
	Set the node of the domain boundary object. More...

void	setIsExternal (FaceManager const &faceManager)
	Set external edges. More...

void	buildEdges (NodeManager &nodeManager, FaceManager &faceManager)
	Build faces-to-edges and nodes-to-edges relation maps. More...

void	buildEdges (localIndex const numNodes, ArrayOfArraysView< localIndex const > const &faceToNodeMap, ArrayOfArrays< localIndex > &faceToEdgeMap)
	Build faces-to-edges and nodes-to-edges relation maps. More...

virtual void	extractMapFromObjectForAssignGlobalIndexNumbers (NodeManager const &nodeManager, std::vector< std::vector< globalIndex > > &globalEdgeNodes) override
	Build `globalEdgeNodes`, a vector containing all the global indices of each nodes of each edges. More...

virtual localIndex	packUpDownMapsSize (arrayView1d< localIndex const > const &packList) const override
	Compute the future size of a packed list. More...

virtual localIndex	packUpDownMaps (buffer_unit_type *&buffer, arrayView1d< localIndex const > const &packList) const override
	Pack an array of edge indices in a buffer. More...

virtual localIndex	unpackUpDownMaps (buffer_unit_type const *&buffer, localIndex_array &packList, bool const overwriteUpMaps, bool const overwriteDownMaps) override
	Unpack a buffer to an array of indices that has been packed. More...

void	fixUpDownMaps (bool const clearIfUnmapped)
	Call fixUpDownMaps of the class ObjectManagerBase for nodes-to-edges and nodes-to-faces relation maps. More...

void	compressRelationMaps ()
	Compress all nodes-to-faces relation maps so that the values of each array are contiguous with no extra capacity in between.

void	depopulateUpMaps (std::set< localIndex > const &receivedEdges, ArrayOfArraysView< localIndex const > const &facesToEdges)
	Clean up the edges-to-faces mapping with respect to a new list of edges. More...

void	connectivityFromGlobalToLocal (const SortedArray< localIndex > &indices, const map< globalIndex, localIndex > &nodeGlobalToLocal, const map< globalIndex, localIndex > &faceGlobalToLocal)
	Build the mapping edge-to-nodes relation from the mapping global to local nodes. More...

void	splitEdge (const localIndex indexToSplit, const localIndex parentNodeIndex, const localIndex childNodeIndex[2], array1d< SortedArray< localIndex > > &nodesToEdges)
	Split an edge (separate its two extremity nodes) More...

bool	hasNode (const localIndex edgeID, const localIndex nodeID) const
	Check if edge `edgeID` contains node `nodeID`. More...

template<typename OUT_VECTOR >
void	calculateCenter (localIndex const edgeIndex, arrayView2d< real64 const, nodes::REFERENCE_POSITION_USD > const &X, OUT_VECTOR &&edgeCenter) const
	Calculate the center of an edge given its index. More...

template<typename OUT_VECTOR >
void	calculateLength (localIndex const edgeIndex, arrayView2d< real64 const, nodes::REFERENCE_POSITION_USD > const &X, OUT_VECTOR &&edgeVector) const
	Calculate the edge segment. More...

Constructors/destructors
	EdgeManager (string const &name, Group *const parent)
	main constructor for EdgeManager Objects More...

	~EdgeManager () override
	default destructor

Getters for stored value.
NodeMapType &	nodeList ()
	Get a node list. More...

NodeMapType const &	nodeList () const
	Provide an accessor to an immutable node list. More...

localIndex &	nodeList (localIndex const edgeIndex, localIndex const nodeIndex)
	Get a reference to a node list. More...

localIndex	nodeList (localIndex const edgeIndex, localIndex const nodeIndex) const
	Get a node list. More...

FaceMapType &	faceList ()
	Get the edge-to-face relation. More...

FaceMapType const &	faceList () const
	Get an immutable accessor to the edge-to-face relation. More...

Public Member Functions inherited from geosx::ObjectManagerBase
	ObjectManagerBase (string const &name, dataRepository::Group *const parent)
	Constructor. More...

	~ObjectManagerBase () override
	Destructor.

virtual localIndex	packSize (string_array const &wrapperNames, arrayView1d< localIndex const > const &packList, integer const recursive, bool onDevice, parallelDeviceEvents &events) const override
	Get the size required to pack a list of indices within a list of wrappers. More...

virtual localIndex	pack (buffer_unit_type *&buffer, string_array const &wrapperNames, arrayView1d< localIndex const > const &packList, integer const recursive, bool onDevice, parallelDeviceEvents &events) const override
	Pack a list of indices within a list of wrappers. More...

virtual localIndex	unpack (buffer_unit_type const *&buffer, arrayView1d< localIndex > &packList, integer const recursive, bool onDevice, parallelDeviceEvents &events) override
	Unpack a buffer. More...

template<bool DOPACK>
localIndex	packSets (buffer_unit_type *&buffer, arrayView1d< localIndex const > const &packList) const
	Packs the elements of each set that actually are in `packList`. More...

localIndex	unpackSets (buffer_unit_type const *&buffer)
	Unpack the content of `buffer` into the sets of the instance. More...

virtual void	viewPackingExclusionList (SortedArray< localIndex > &exclusionList) const
	Inserts in `exclusionList` the data that shall not be packed. More...

virtual localIndex	packGlobalMapsSize (arrayView1d< localIndex const > const &packList, integer const recursive) const
	Computes the pack size of the global maps elements in the @ packList. More...

virtual localIndex	packGlobalMaps (buffer_unit_type *&buffer, arrayView1d< localIndex const > const &packList, integer const recursive) const
	Packs the global maps elements in the @ packList. More...

void	setReceiveLists ()
	Clear and redefines the ghosts to receive.

virtual localIndex	unpackUpDownMaps (buffer_unit_type const *&buffer, array1d< localIndex > &packList, bool const overwriteUpMaps, bool const overwriteDownMaps)
	Unpacks the specific elements in the @ packList. More...

virtual localIndex	unpackGlobalMaps (buffer_unit_type const *&buffer, localIndex_array &packList, integer const recursive)
	Unpacks the global maps from `buffer`. More...

localIndex	packParentChildMapsSize (arrayView1d< localIndex const > const &packList) const
	Computes the pack size of the parent/child relations in `packList`. More...

localIndex	packParentChildMaps (buffer_unit_type *&buffer, arrayView1d< localIndex const > const &packList) const
	Packs the parent/child relations in `packList`. More...

localIndex	unpackParentChildMaps (buffer_unit_type const *&buffer, localIndex_array &packList)
	Unacks the parent/child relations in `packList`. More...

void	moveSets (LvArray::MemorySpace const targetSpace)
	Manually move all sets to a memory space. More...

localIndex	resize (localIndex const newSize, const bool)
	Resize the group and all contained wrappers that resize with parent. More...

void	createSet (const string &newSetName)
	Creates a new set. More...

void	constructSetFromSetAndMap (SortedArrayView< localIndex const > const &inputSet, const array2d< localIndex > &map, const string &setName)
	Builds a new set on this instance given another objects set and the map between them. More...

void	constructSetFromSetAndMap (SortedArrayView< localIndex const > const &inputSet, const array1d< localIndex_array > &map, const string &setName)
	Builds a new set on this instance given another objects set and the map between them. More...

void	constructSetFromSetAndMap (SortedArrayView< localIndex const > const &inputSet, ArrayOfArraysView< localIndex const > const &map, const string &setName)
	Builds a new set on this instance given another objects set and the map between them. More...

void	constructGlobalToLocalMap ()
	Constructs the global to local map.

void	constructLocalListOfBoundaryObjects (localIndex_array &objectList) const
	Computes the (local) index list that are domain boundaries. More...

void	constructGlobalListOfBoundaryObjects (globalIndex_array &objectList) const
	Computes the (global) index list that are domain boundaries. More...

void	setGhostRankForSenders (int const neighborRank)
	Defines `neighborRank` ownership for ghost objects. More...

localIndex	getNumberOfGhosts () const
	Get the number of ghost objects. More...

localIndex	getNumberOfLocalIndices () const
	Get the number of locally owned objects. More...

integer	splitObject (localIndex const indexToSplit, int const rank, localIndex &newIndex)
	Split object to deal with topology changes. More...

void	inheritGhostRankFromParent (std::set< localIndex > const &indices)
	sets the value of m_ghostRank to the value of the objects parent. More...

void	copyObject (localIndex const source, localIndex const destination)
	Copy object from `source` to @ destination. More...

virtual void	setMaxGlobalIndex ()
	Computes the maximum global index allong all the MPI ranks.

virtual void	enforceStateFieldConsistencyPostTopologyChange (std::set< localIndex > const &targetIndices)
	Updates the child and target indices after a topology change. More...

template<typename MESH_DATA_TRAIT >
dataRepository::Wrapper< typename MESH_DATA_TRAIT::type > &	registerExtrinsicData (string const &nameOfRegisteringObject)
	Register data with this ObjectManagerBase using a dataRepository::Wrapper. More...

template<typename MESH_DATA_TRAIT0 , typename MESH_DATA_TRAIT1 , typename ... MESH_DATA_TRAITS>
void	registerExtrinsicData (string const &nameOfRegisteringObject)
	Register a collection of data with this ObjectManagerBase using a dataRepository::Wrapper. More...

template<typename MESH_DATA_TRAIT >
GEOSX_DECLTYPE_AUTO_RETURN	getExtrinsicData () const
	Get a view to the data associated with a trait from this ObjectManagerBase. More...

template<typename MESH_DATA_TRAIT >
GEOSX_DECLTYPE_AUTO_RETURN	getExtrinsicData ()
	Get the data associated with a trait from this ObjectManagerBase. More...

template<typename MESH_DATA_TRAIT >
bool	hasExtrinsicData () const
	Checks if an extrinsic data has been registered. More...

virtual viewKeyStruct &	viewKeys ()
	Get the view keys for Group access. More...

virtual viewKeyStruct const &	viewKeys () const
	Get the view keys for Group access, const version. More...

virtual groupKeyStruct &	groupKeys ()
	Get the group keys for Group access. More...

virtual groupKeyStruct const &	groupKeys () const
	Get the group keys for Group access, const version. More...

Group &	sets ()
	Get the group holding the object sets. More...

Group const &	sets () const
	Get the group holding the object sets, const version. More...

SortedArray< localIndex > &	externalSet ()
	Get the external set. More...

SortedArrayView< localIndex const >	externalSet () const
	Get the external set, const version. More...

void	updateGlobalToLocalMap (localIndex const lid)
	Updates (if needed) the global index for local index `lid`. More...

arrayView1d< globalIndex >	localToGlobalMap ()
	Get local to global map. More...

arrayView1d< globalIndex const >	localToGlobalMap () const
	Get local to global map, const version. More...

unordered_map< globalIndex, localIndex > const &	globalToLocalMap () const
	Get global to local map. More...

localIndex	globalToLocalMap (globalIndex const gid) const
	Retrieves the local index for given global index. More...

array1d< integer > const &	isExternal ()
	Get the locality information of the objects. More...

arrayView1d< integer const >	isExternal () const
	Get the locality information of the objects. More...

array1d< integer > const &	ghostRank ()
	Get the ghost information of each object. More...

arrayView1d< integer const >	ghostRank () const
	Get the ghost information of each object, const version. More...

NeighborData &	getNeighborData (int const rank)
	Get neighbor data for given `rank`. More...

NeighborData const &	getNeighborData (int const rank) const
	Get neighbor data for given `rank`, const version. More...

void	addNeighbor (int const rank)
	Add a neighbor for `rank`. More...

void	removeNeighbor (int const rank)
	Remove neighbor for `rank`. More...

globalIndex	localMaxGlobalIndex () const
	Get the local maximum global index on this rank. More...

globalIndex	maxGlobalIndex () const
	Get the maximum global index of all objects across all rank. See. More...

arrayView1d< integer >	getDomainBoundaryIndicator ()
	Get the domain boundary indicator. More...

arrayView1d< integer const >	getDomainBoundaryIndicator () const
	Get the domain boundary indicator. More...

Public Member Functions inherited from geosx::dataRepository::Group
virtual bool	registerCallback (void *func, const std::type_info &funcType)
	Register a callback function on the group. More...

	Group (string const &name, Group *const parent)
	Constructor. More...

	Group (string const &name, conduit::Node &rootNode)
	Constructor. More...

	Group (Group &&source)=default
	Move constructor. More...

virtual	~Group ()
	Destructor, deletes all Groups and Wrappers owned by this Group.

	Group ()=delete
	Deleted default constructor.

	Group (Group const &)=delete
	Deleted copy constructor.

Group &	operator= (Group const &)=delete
	Deleted copy assignment operator. More...

Group &	operator= (Group &&)=delete
	Deleted move assignment operator. More...

void	printDataHierarchy (integer indent=0)
	Prints the data hierarchy recursively. More...

string	dumpInputOptions () const

template<typename T = Group>
T &	registerGroup (string const &name, std::unique_ptr< T > newObject)
	Register a new Group as a sub-group of current Group. More...

template<typename T = Group>
T &	registerGroup (string const &name, T *newObject)
	Register a new Group as a sub-group of current Group. More...

template<typename T = Group>
T &	registerGroup (string const &name)
	Register a new Group as a sub-group of current Group. More...

template<typename T = Group>
T &	registerGroup (subGroupMap::KeyIndex const &keyIndex)
	Register a new Group as a sub-group of current Group. More...

template<typename T = Group, typename TBASE = Group>
T &	registerGroup (string const &name, string const &catalogName)
	Register a new Group as a sub-group of current Group. More...

void	deregisterGroup (string const &name)
	Removes a child group from this group. More...

virtual Group *	createChild (string const &childKey, string const &childName)
	Creates a new sub-Group using the ObjectCatalog functionality. More...

template<typename T = Group, typename KEY = void>
T *	getGroupPointer (KEY const &key)
	Return a pointer to a sub-group of the current Group. More...

template<typename T = Group, typename KEY = void>
T const *	getGroupPointer (KEY const &key) const
	Return a pointer to a sub-group of the current Group. More...

template<typename T = Group, typename KEY = void>
T &	getGroup (KEY const &key)
	Return a reference to a sub-group of the current Group. More...

template<typename T = Group, typename KEY = void>
T const &	getGroup (KEY const &key) const
	Return a reference to a sub-group of the current Group. More...

template<typename T = Group>
T &	getGroupByPath (string const &path)
	Retrieve a group from the hierarchy using a path. More...

template<typename T = Group>
T const &	getGroupByPath (string const &path) const
	Retrieve a group from the hierarchy using a path. More...

subGroupMap &	getSubGroups ()
	Get the subgroups object. More...

subGroupMap const &	getSubGroups () const
	Get the subgroups object. More...

localIndex	numSubGroups () const
	return the number of sub groups in this Group More...

template<typename T = Group>
bool	hasGroup (string const &name) const
	Check whether a sub-group exists. More...

template<typename GROUPTYPE = Group, typename ... GROUPTYPES, typename LAMBDA >
void	forSubGroups (LAMBDA &&lambda)
	Apply the given functor to subgroups that can be casted to one of specified types. More...

template<typename GROUPTYPE = Group, typename ... GROUPTYPES, typename LAMBDA >
void	forSubGroups (LAMBDA &&lambda) const
	Apply the given functor to subgroups that can be casted to one of specified types. More...

template<typename GROUPTYPE = Group, typename ... GROUPTYPES, typename LOOKUP_CONTAINER , typename LAMBDA >
void	forSubGroups (LOOKUP_CONTAINER const &subGroupKeys, LAMBDA &&lambda)

template<typename GROUPTYPE = Group, typename ... GROUPTYPES, typename LOOKUP_CONTAINER , typename LAMBDA >
void	forSubGroups (LOOKUP_CONTAINER const &subGroupKeys, LAMBDA &&lambda) const

template<typename LAMBDA >
void	forWrappers (LAMBDA &&lambda)
	Apply the given functor to wrappers. More...

template<typename LAMBDA >
void	forWrappers (LAMBDA &&lambda) const
	Apply the given functor to wrappers. More...

template<typename TYPE , typename ... TYPES, typename LAMBDA >
void	forWrappers (LAMBDA &&lambda)
	Apply the given functor to wrappers that can be cast to one of specified types. More...

template<typename TYPE , typename ... TYPES, typename LAMBDA >
void	forWrappers (LAMBDA &&lambda) const
	Apply the given functor to wrappers that can be cast to one of specified types. More...

void	initialize ()
	Run initialization functions on this and all subgroups. More...

virtual void	initializationOrder (string_array &order)
	Sets the initialization order for sub-Groups. More...

void	initializePostInitialConditions ()
	Initialization routine to be called after calling ApplyInitialConditions(). More...

void	postRestartInitializationRecursive ()
	Initialization routine to be called after calling reading a restart file. More...

void	processInputFileRecursive (xmlWrapper::xmlNode &targetNode)
	Recursively read values using ProcessInputFile() from the input file and put them into the wrapped values for this group. More...

void	postProcessInputRecursive ()
	Recursively call postProcessInput() to apply post processing after reading input values.

template<typename T , typename TBASE = T>
Wrapper< TBASE > &	registerWrapper (string const &name, wrapperMap::KeyIndex::index_type *const rkey=nullptr)
	Create and register a Wrapper around a new object. More...

template<typename T , typename TBASE = T>
Wrapper< TBASE > &	registerWrapper (Group::wrapperMap::KeyIndex const &viewKey)

template<typename T >
Wrapper< T > &	registerWrapper (string const &name, std::unique_ptr< T > newObject)
	Register a Wrapper around a given object and take ownership. More...

template<typename T >
Wrapper< T > &	registerWrapper (string const &name, T *newObject)
	Register a Wrapper around an existing object, does not take ownership of the object. More...

WrapperBase &	registerWrapper (string const &name, std::unique_ptr< WrapperBase > wrapper)
	Register and take ownership of an existing Wrapper. More...

void	deregisterWrapper (string const &name)
	Removes a Wrapper from this group. More...

void	generateDataStructureSkeleton (integer const level)
	Build a complete datastructure for schema generation. More...

virtual void	expandObjectCatalogs ()
	Expand any catalogs in the data structure.

virtual void	setSchemaDeviations (xmlWrapper::xmlNode schemaRoot, xmlWrapper::xmlNode schemaParent, integer documentationType)
	Inform the schema generator of any deviations between the xml and GEOS data structures. More...

virtual void	registerDataOnMeshRecursive (Group &meshBodies)
	Calls RegisterDataOnMesh() recursively. More...

virtual void	registerDataOnMesh (Group &meshBodies)
	Register data on mesh entities. More...

virtual localIndex	packSize (string_array const &wrapperNames, integer const recursive, bool onDevice, parallelDeviceEvents &events) const
	Get the size required to pack a list of wrappers. More...

virtual localIndex	pack (buffer_unit_type *&buffer, string_array const &wrapperNames, integer const recursive, bool onDevice, parallelDeviceEvents &events) const
	Pack a list of wrappers to a buffer. More...

template<typename KEY >
WrapperBase const &	getWrapperBase (KEY const &key) const
	Return a reference to a WrapperBase stored in this group. More...

template<typename KEY >
WrapperBase &	getWrapperBase (KEY const &key)
	Return a reference to a WrapperBase stored in this group. More...

indexType	getWrapperIndex (string const &name) const

wrapperMap const &	wrappers () const
	Get access to the internal wrapper storage. More...

wrapperMap &	wrappers ()
	Get access to the internal wrapper storage. More...

indexType	numWrappers () const
	Return the number of wrappers. More...

template<typename LOOKUP_TYPE >
bool	hasWrapper (LOOKUP_TYPE const &lookup) const
	Check if a wrapper exists. More...

template<typename T , typename LOOKUP_TYPE >
Wrapper< T > const &	getWrapper (LOOKUP_TYPE const &index) const
	Retrieve a Wrapper stored in this group. More...

template<typename T , typename LOOKUP_TYPE >
Wrapper< T > &	getWrapper (LOOKUP_TYPE const &index)
	Retrieve a Wrapper stored in this group. More...

template<typename T , typename LOOKUP_TYPE >
Wrapper< T > const *	getWrapperPointer (LOOKUP_TYPE const &index) const
	Retrieve a Wrapper stored in this group. More...

template<typename T , typename LOOKUP_TYPE >
Wrapper< T > *	getWrapperPointer (LOOKUP_TYPE const &index)
	Retrieve a Wrapper stored in this group. More...

template<typename T , typename LOOKUP_TYPE >
GEOSX_DECLTYPE_AUTO_RETURN	getReference (LOOKUP_TYPE const &lookup) const
	Look up a wrapper and get reference to wrapped object. More...

template<typename T , typename LOOKUP_TYPE >
T &	getReference (LOOKUP_TYPE const &lookup)
	Look up a wrapper and get reference to wrapped object. More...

virtual void	reserve (indexType const newsize)
	Set the new capacity and reserve it in all wrappers that resize with parent. More...

localIndex	capacity () const
	Get the "capacity" of the group, which determines the capacity of resizable wrappers. More...

localIndex	size () const
	Get the "size" of the group, which determines the number of elements in resizable wrappers. More...

string const &	getName () const
	Get group name. More...

string	getPath () const
	Return the path of this Group in the data repository. More...

Group &	getParent ()
	Access the group's parent. More...

Group const &	getParent () const
	Access the group's parent. More...

localIndex	getIndexInParent () const
	Get the group's index withing its parent group. More...

integer	sizedFromParent () const
	Check whether this Group is resized when its parent is resized. More...

Group &	setSizedFromParent (int val)
	Set whether this wrapper is resized when its parent is resized. More...

RestartFlags	getRestartFlags () const
	Get flags that control restart output of this group. More...

void	setRestartFlags (RestartFlags flags)
	Set flags that control restart output of this group. More...

InputFlags	getInputFlags () const
	Get input flags for schema generation. More...

void	setInputFlags (InputFlags flags)
	Set input flags for schema generation. More...

conduit::Node &	getConduitNode ()
	Return the Conduit node object associated with this group. More...

conduit::Node const &	getConduitNode () const
	Return the Conduit node object associated with this group. More...

void	prepareToWrite ()
	Register the group and its wrappers with Conduit.

void	finishWriting ()
	Write the group and its wrappers into Conduit.

void	loadFromConduit ()
	Read the group and its wrappers from Conduit.

void	enableLogLevelInput ()
	Enable verbosity input for object.

integer	getLogLevel () const

Static Public Member Functions
static localIndex	faceMapExtraSpacePerEdge ()
	Oversize the Face mapping by this amount for each edge (hardcoded) More...

Static Public Member Functions inherited from geosx::ObjectManagerBase
template<typename TYPE_RELATION >
static void	fixUpDownMaps (TYPE_RELATION &relation, map< localIndex, array1d< globalIndex > > &unmappedIndices, bool const clearIfUnmapped)
	Fixing the up/down maps by mapping the unmapped indices. More...

template<typename TYPE_RELATION >
static void	fixUpDownMaps (TYPE_RELATION &relation, map< localIndex, SortedArray< globalIndex > > &unmappedIndices, bool const clearIfUnmapped)
	Fixing the up/down maps by mapping the unmapped indices. More...

static void	fixUpDownMaps (ArrayOfSets< localIndex > &relation, unordered_map< globalIndex, localIndex > const &globalToLocal, map< localIndex, SortedArray< globalIndex > > &unmappedIndices, bool const clearIfUnmapped)
	Fixing the up/down maps by mapping the unmapped indices. More...

static void	cleanUpMap (std::set< localIndex > const &targetIndices, array1d< SortedArray< localIndex > > &upmap, arrayView2d< localIndex const > const &downmap)
	Removes from the list of arrays of `upmap` all the elements for which the "mirror target array" of `downmap` does not contain the proper target index. More...

static void	cleanUpMap (std::set< localIndex > const &targetIndices, ArrayOfSetsView< localIndex > const &upmap, arrayView2d< localIndex const > const &downmap)
	Removes from the list of sets of `upmap` all the elements for which the "mirror target array" of `downmap` does not contain the proper target index. More...

static void	cleanUpMap (std::set< localIndex > const &targetIndices, array1d< SortedArray< localIndex > > &upmap, arrayView1d< arrayView1d< localIndex const > const > const &downmap)
	Removes from the list of arrays of `upmap` all the elements for which the "mirror target array" of `downmap` does not contain the proper target index. More...

static void	cleanUpMap (std::set< localIndex > const &targetIndices, ArrayOfSetsView< localIndex > const &upmap, arrayView1d< arrayView1d< localIndex const > const > const &downmap)
	Removes from the list of sets of `upmap` all the elements for which the "mirror target array" of `downmap` does not contain the proper target index. More...

static void	cleanUpMap (std::set< localIndex > const &targetIndices, ArrayOfSetsView< localIndex > const &upmap, ArrayOfArraysView< localIndex const > const &downmap)
	Removes from the list of sets of `upmap` all the elements for which the "mirror target array" of `downmap` does not contain the proper target index. More...

static localIndex	getParentRecusive (arraySlice1d< localIndex const > const &parentIndices, localIndex const lookup)
	Get the upmost parent. More...

static CatalogInterface::CatalogType &	getCatalog ()
	Acessing the unique instance of this catalog. More...

Static Public Member Functions inherited from geosx::dataRepository::Group
template<typename T0 , typename T1 , typename ... CASTTYPES, typename CONTAINERTYPE , typename LAMBDA >
static bool	applyLambdaToContainer (CONTAINERTYPE &container, LAMBDA &&lambda)
	Apply a given functor to a container if the container can be cast to one of the specified types. More...

static CatalogInterface::CatalogType &	getCatalog ()
	Get the singleton catalog for this class. More...

Public Attributes
SortedArray< localIndex >	m_recalculateFractureConnectorEdges
	map from the edges to the fracture connectors index (edges that are fracture connectors)

map< localIndex, localIndex >	m_edgesToFractureConnectorsEdges
	todo

array1d< localIndex >	m_fractureConnectorsEdgesToEdges
	todo

ArrayOfArrays< localIndex >	m_fractureConnectorEdgesToFaceElements
	todo

Public Attributes inherited from geosx::ObjectManagerBase
struct geosx::ObjectManagerBase::viewKeyStruct	m_ObjectManagerBaseViewKeys
	viewKey struct for the ObjectManagerBase class

struct geosx::ObjectManagerBase::groupKeyStruct	m_ObjectManagerBaseGroupKeys
	groupKey struct for the ObjectManagerBase class

Static Factory Catalog Functions
static const string	catalogName ()

virtual const string	getCatalogName () const override
	Getter used to access the edge manager catalog name. More...

viewKeyStruct/groupKeyStruct
geosx::EdgeManager::viewKeyStruct	viewKeys
	viewKeys

constexpr int	maxEdgesPerNode () const
	}@ More...

Additional Inherited Members
Protected Member Functions inherited from geosx::dataRepository::Group
virtual void	postProcessInput ()

virtual void	initializePreSubGroups ()
	Called by Initialize() prior to initializing sub-Groups.

virtual void	initializePostSubGroups ()
	Called by Initialize() after to initializing sub-Groups.

virtual void	initializePostInitialConditionsPreSubGroups ()
	Called by InitializePostInitialConditions() prior to initializing sub-Groups.

virtual void	initializePostInitialConditionsPostSubGroups ()
	Called by InitializePostInitialConditions() after to initializing sub-Groups.

virtual void	postRestartInitialization ()
	Performs initialization required after reading from a restart file.

Protected Attributes inherited from geosx::ObjectManagerBase
Group	m_sets
	Group that holds object sets.

Group	m_neighborGroup
	Group that holds all the NeighborData objects.

array1d< globalIndex >	m_localToGlobalMap
	Contains the global index of each object.

unordered_map< globalIndex, localIndex >	m_globalToLocalMap
	Map from object global index to the local index.

array1d< integer >	m_isExternal
	Array that holds if an object is external.

array1d< integer >	m_domainBoundaryIndicator
	Domain boundary indicator: 1 means the "index" is on the boundary.

array1d< integer >	m_ghostRank
	Array that holds the ghost information about each object. More...

unordered_map< int, NeighborData >	m_neighborData
	A map from rank to the associated NeighborData object.

real64	m_overAllocationFactor = 1.1
	Factor by which to overallocate when adding objects.

globalIndex	m_maxGlobalIndex = -1
	The maximum global index of all objects across all rank.

globalIndex	m_localMaxGlobalIndex = -1
	The maximum global index of any object of all objects on this rank.

Detailed Description

This class provides an interface to ObjectManagerBase in order to manage edge data.

An edge is bounded by two nodes. This class aims to manage all the edges of every cell elements in a DomainPartition.

Definition at line 42 of file EdgeManager.hpp.

Constructor & Destructor Documentation

◆ EdgeManager()

geosx::EdgeManager::EdgeManager	(	string const &	name,
		Group *const	parent
	)

main constructor for EdgeManager Objects

Parameters

[in]	name	the name of the EdgeManager object in the repository
[in]	parent	the parent group of the EdgeManager object being constructed

Member Function Documentation

◆ buildEdges() [1/2]

void geosx::EdgeManager::buildEdges	(	NodeManager &	nodeManager,
		FaceManager &	faceManager
	)

Build faces-to-edges and nodes-to-edges relation maps.

Parameters

[in]	nodeManager	manager of all nodes in the DomainPartition
[in]	faceManager	manager of all faces in the DomainPartition

◆ buildEdges() [2/2]

void geosx::EdgeManager::buildEdges	(	localIndex const	numNodes,
		ArrayOfArraysView< localIndex const > const &	faceToNodeMap,
		ArrayOfArrays< localIndex > &	faceToEdgeMap
	)

Build faces-to-edges and nodes-to-edges relation maps.

Parameters

[in]	numNodes	number of nodes
[in]	faceToNodeMap	manager face-to-nodes map
[in]	faceToEdgeMap	manager face-to-edges map

◆ calculateCenter()

template<typename OUT_VECTOR >

void geosx::EdgeManager::calculateCenter	(	localIndex const	edgeIndex,
		arrayView2d< real64 const, nodes::REFERENCE_POSITION_USD > const &	X,
		OUT_VECTOR &&	edgeCenter
	)		const

inline

Calculate the center of an edge given its index.

Template Parameters

OUT_VECTOR type of output

Parameters

edgeIndex	index of the edge
X	array view of nodes associated with the edge
edgeCenter	output vector containing coordinate of the edge center

Definition at line 388 of file EdgeManager.hpp.

◆ calculateLength()

template<typename OUT_VECTOR >

void geosx::EdgeManager::calculateLength	(	localIndex const	edgeIndex,
		arrayView2d< real64 const, nodes::REFERENCE_POSITION_USD > const &	X,
		OUT_VECTOR &&	edgeVector
	)		const

inline

Calculate the edge segment.

Template Parameters

OUT_VECTOR type of output

Parameters

edgeIndex	index of the edge
X	array view of the nodes associated with the NodeManager of current domain
edgeVector	output vector containing edge segment

Definition at line 398 of file EdgeManager.hpp.

◆ catalogName()

static const string geosx::EdgeManager::catalogName ( )

inlinestatic

Returns: the string representing the edge manager name in the catalog

Definition at line 60 of file EdgeManager.hpp.

◆ connectivityFromGlobalToLocal()

void geosx::EdgeManager::connectivityFromGlobalToLocal	(	const SortedArray< localIndex > &	indices,
		const map< globalIndex, localIndex > &	nodeGlobalToLocal,
		const map< globalIndex, localIndex > &	faceGlobalToLocal
	)

Build the mapping edge-to-nodes relation from the mapping global to local nodes.

Parameters

[in]	indices	array of index of the global to local nodes
[in]	nodeGlobalToLocal	map of the global to local nodes
[in]	faceGlobalToLocal	GEOX UNUSED PARAMETER

◆ depopulateUpMaps()

void geosx::EdgeManager::depopulateUpMaps	(	std::set< localIndex > const &	receivedEdges,
		ArrayOfArraysView< localIndex const > const &	facesToEdges
	)

Clean up the edges-to-faces mapping with respect to a new list of edges.

Parameters

[in]	receivedEdges	the new list of edges indices
[in]	facesToEdges	map to go from faces to edges

◆ extractMapFromObjectForAssignGlobalIndexNumbers()

virtual void geosx::EdgeManager::extractMapFromObjectForAssignGlobalIndexNumbers	(	NodeManager const &	nodeManager,
		std::vector< std::vector< globalIndex > > &	globalEdgeNodes
	)

overridevirtual

Build globalEdgeNodes, a vector containing all the global indices of each nodes of each edges.

Parameters

[in]	nodeManager	the nodeManager object.
[out]	globalEdgeNodes	the globalEdgesNodes array to be built [ [global_index_node_0_edge_0, global_index_node1_edge_0], [global_index_node_0_edge_1, global_index_node1_edge_1] ....]

Reimplemented from geosx::ObjectManagerBase.

◆ faceList() [1/2]

FaceMapType& geosx::EdgeManager::faceList ( )

inline

Get the edge-to-face relation.

Returns: A FaceMapType

Definition at line 334 of file EdgeManager.hpp.

◆ faceList() [2/2]

FaceMapType const& geosx::EdgeManager::faceList ( ) const

inline

Get an immutable accessor to the edge-to-face relation.

Returns: An immutable FaceMapType

Definition at line 340 of file EdgeManager.hpp.

◆ faceMapExtraSpacePerEdge()

static localIndex geosx::EdgeManager::faceMapExtraSpacePerEdge ( )

inlinestatic

Oversize the Face mapping by this amount for each edge (hardcoded)

Returns: extra space for each edge of the EdgetoFace map

Definition at line 77 of file EdgeManager.hpp.

◆ fixUpDownMaps()

void geosx::EdgeManager::fixUpDownMaps ( bool const clearIfUnmapped )

Call fixUpDownMaps of the class ObjectManagerBase for nodes-to-edges and nodes-to-faces relation maps.

Parameters

[in] clearIfUnmapped boolean to indicate if the unmaped indices should be removed or not

◆ getCatalogName()

virtual const string geosx::EdgeManager::getCatalogName ( ) const

inlineoverridevirtual

Getter used to access the edge manager catalog name.

Returns: the edge manager catalog name

Implements geosx::ObjectManagerBase.

Definition at line 68 of file EdgeManager.hpp.

◆ hasNode()

bool geosx::EdgeManager::hasNode	(	const localIndex	edgeID,
		const localIndex	nodeID
	)		const

Check if edge edgeID contains node nodeID.

Parameters

[in]	edgeID	local index of the edge
[in]	nodeID	local index of the node

Returns: boolean : true if the node nodeID is part of the edge edgeID; false otherwise

◆ maxEdgesPerNode()

constexpr int geosx::EdgeManager::maxEdgesPerNode ( ) const

inline

}@

Return the maximum number of edges per node.

Returns: Maximum allowable number of edges connected to one node (hardcoded for now)

Definition at line 293 of file EdgeManager.hpp.

◆ nodeList() [1/4]

NodeMapType& geosx::EdgeManager::nodeList ( )

inline

Get a node list.

Returns: reference to the list of edge to node relation

Definition at line 304 of file EdgeManager.hpp.

◆ nodeList() [2/4]

NodeMapType const& geosx::EdgeManager::nodeList ( ) const

inline

Provide an accessor to an immutable node list.

Returns: reference to the list of edge to node relation

Definition at line 310 of file EdgeManager.hpp.

◆ nodeList() [3/4]

localIndex& geosx::EdgeManager::nodeList	(	localIndex const	edgeIndex,
		localIndex const	nodeIndex
	)

inline

Get a reference to a node list.

Parameters

[in]	edgeIndex	local index of the edge
[in]	nodeIndex	local index of the node

Returns: a reference of the index of the edge to node relation

Definition at line 318 of file EdgeManager.hpp.

◆ nodeList() [4/4]

localIndex geosx::EdgeManager::nodeList	(	localIndex const	edgeIndex,
		localIndex const	nodeIndex
	)		const

inline

Get a node list.

Parameters

[in]	edgeIndex	local index of the edge
[in]	nodeIndex	local index of the node

Returns: a reference of the index of the edge to node relation

Definition at line 327 of file EdgeManager.hpp.

◆ packUpDownMaps()

virtual localIndex geosx::EdgeManager::packUpDownMaps	(	buffer_unit_type *&	buffer,
		arrayView1d< localIndex const > const &	packList
	)		const

overridevirtual

Pack an array of edge indices in a buffer.

Packed data are meant to be communicated to other MPI ranks

Parameters

[in,out]	buffer	a buffer to pack the edge index data into
[in]	packList	the indices of edge to pack

Returns: The size of the packed array

Reimplemented from geosx::ObjectManagerBase.

◆ packUpDownMapsSize()

virtual localIndex geosx::EdgeManager::packUpDownMapsSize ( arrayView1d< localIndex const > const & packList ) const

overridevirtual

Compute the future size of a packed list.

Packed data are meant to be communicated to other MPI ranks

Parameters

[in] packList the list of edge indices to be packed

Returns: The size of the packed list

Reimplemented from geosx::ObjectManagerBase.

◆ resize()

virtual void geosx::EdgeManager::resize ( localIndex const newSize )

overridevirtual

Resize the EdgeManager object and all it members.

the size of the EdgeMananager is the number of edges in the domain.

Parameters

[in] newSize the new number of edges.

Reimplemented from geosx::dataRepository::Group.

◆ setDomainBoundaryObjects()

void geosx::EdgeManager::setDomainBoundaryObjects ( FaceManager const & referenceObject )

Set the node of the domain boundary object.

Parameters

[in] referenceObject the reference of the face manager.

◆ setIsExternal()

void geosx::EdgeManager::setIsExternal ( FaceManager const & faceManager )

Set external edges.

external edges are the edges on the faces which are external

Parameters

[in] faceManager the face manager to obtain external face

◆ splitEdge()

void geosx::EdgeManager::splitEdge	(	const localIndex	indexToSplit,
		const localIndex	parentNodeIndex,
		const localIndex	childNodeIndex[2],
		array1d< SortedArray< localIndex > > &	nodesToEdges
	)

Split an edge (separate its two extremity nodes)

Parameters

[in]	indexToSplit	Index of the edge to split
[in]	parentNodeIndex	index of the parent node
[in]	childNodeIndex	index of the child node
[in]	nodesToEdges	array of nodes-to-edges list

◆ unpackUpDownMaps()

virtual localIndex geosx::EdgeManager::unpackUpDownMaps	(	buffer_unit_type const *&	buffer,
		localIndex_array &	packList,
		bool const	overwriteUpMaps,
		bool const	overwriteDownMaps
	)

overridevirtual

Unpack a buffer to an array of indices that has been packed.

Packed data are meant to be communicated to other MPI ranks

Parameters

[in]	buffer	buffer containing the packed indices
[in,out]	packList	the array of local index to be unpacked
[in]	overwriteUpMaps	boolean to state if the Up maps should be overwritten
[in]	overwriteDownMaps	boolean to state if the Downs maps should be overwritten

Returns: The size of the unpacked array

The documentation for this class was generated from the following file:

coreComponents/mesh/EdgeManager.hpp

Classes

Public Types

Public Member Functions

Static Public Member Functions

Public Attributes

Static Factory Catalog Functions

viewKeyStruct/groupKeyStruct

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

◆ EdgeManager()

Member Function Documentation

◆ buildEdges() [1/2]

◆ buildEdges() [2/2]

◆ calculateCenter()

◆ calculateLength()

◆ catalogName()

◆ connectivityFromGlobalToLocal()

◆ depopulateUpMaps()

◆ extractMapFromObjectForAssignGlobalIndexNumbers()

◆ faceList() [1/2]

◆ faceList() [2/2]

◆ faceMapExtraSpacePerEdge()

◆ fixUpDownMaps()

◆ getCatalogName()

◆ hasNode()

◆ maxEdgesPerNode()

◆ nodeList() [1/4]

◆ nodeList() [2/4]

◆ nodeList() [3/4]

◆ nodeList() [4/4]

◆ packUpDownMaps()

◆ packUpDownMapsSize()

◆ resize()

◆ setDomainBoundaryObjects()

◆ setIsExternal()

◆ splitEdge()

◆ unpackUpDownMaps()