#include <CellElementSubRegion.hpp>

Inheritance diagram for geosx::CellElementSubRegion:

[legend]

Classes
struct	viewKeyStruct
	struct to serve as a container for variable strings and keys More...

Public Types
using	EmbSurfMapType = InterObjectRelation< ArrayOfArrays< localIndex > >
	Type of map between cell blocks and embedded elements.

Public Types inherited from geosx::CellBlock
using	NodeMapType = InterObjectRelation< array2d< localIndex, cells::NODE_MAP_PERMUTATION > >
	Alias for the type of the element-to-node map.

using	EdgeMapType = FixedOneToManyRelation
	Alias for the type of the element-to-edge map.

using	FaceMapType = FixedOneToManyRelation
	Alias for the type of the element-to-face map.

Public Types inherited from geosx::ObjectManagerBase
using	CatalogInterface = dataRepository::CatalogInterface< ObjectManagerBase, string const &, dataRepository::Group *const >
	Nested type for the `factory` pattern, defining the base class (ObjectManagerBase) and the builder arguments (string const &, dataRepository::Group * const) of the derived products.

Public Types inherited from geosx::dataRepository::Group
using	subGroupMap = MappedVector< Group, Group *, keyType, indexType >
	The template specialization of MappedVector to use for the collection of sub-Group objects.

using	wrapperMap = MappedVector< WrapperBase, WrapperBase *, keyType, indexType >
	The template specialization of MappedVector to use for the collection wrappers objects.

using	CatalogInterface = dataRepository::CatalogInterface< Group, string const &, Group *const >
	Type alias for catalog interface used by this class. See CatalogInterface.

Public Member Functions
void	addFracturedElement (localIndex const cellElemIndex, localIndex const embSurfIndex)
	Add fractured element to list and relative entries to the map. More...

virtual viewKeyStruct &	viewKeys () override
	Get the view keys for Group access. More...

virtual viewKeyStruct const &	viewKeys () const override
	Get the view keys for Group access, const version. More...

array4d< real64 > &	dNdX ()

arrayView4d< real64 const >	dNdX () const

array2d< real64 > &	detJ ()

arrayView2d< real64 const >	detJ () const

SortedArray< localIndex > &	fracturedElementsList ()

SortedArrayView< localIndex const > const	fracturedElementsList () const

EmbSurfMapType &	embeddedSurfacesList ()

EmbSurfMapType const &	embeddedSurfacesList () const

void	calculateElementCenters (arrayView2d< real64 const, nodes::REFERENCE_POSITION_USD > const &X) const
	Compute the center of each element in the subregion. More...

Constructor / Destructor
	CellElementSubRegion (string const &name, Group *const parent)
	Constructor for this class. More...

virtual	~CellElementSubRegion () override
	Destructor.

Helpers for CellElementSubRegion construction
void	copyFromCellBlock (CellBlock &source)
	Fill the CellElementSubRegion by copying those of the source CellBlock. More...

Overriding packing / Unpacking functions
virtual void	viewPackingExclusionList (SortedArray< localIndex > &exclusionList) const override
	Inserts in `exclusionList` the data that shall not be packed. More...

virtual localIndex	packUpDownMapsSize (arrayView1d< localIndex const > const &packList) const override
	Computes the pack size of the specific elements in the @ packList. More...

virtual localIndex	packUpDownMaps (buffer_unit_type *&buffer, arrayView1d< localIndex const > const &packList) const override
	Packs the specific elements in the @ packList. More...

virtual localIndex	unpackUpDownMaps (buffer_unit_type const *&buffer, array1d< localIndex > &packList, bool const overwriteUpMaps, bool const overwriteDownMaps) override
	Unpacks the specific elements in the @ packList. More...

localIndex	packFracturedElementsSize (arrayView1d< localIndex const > const &packList, arrayView1d< globalIndex const > const &embeddedSurfacesLocalToGlobal) const
	Computes the pack size of the set of fractured elements and the element-to-embeddedSurfaces map of the elements in the @ packList. More...

localIndex	packFracturedElements (buffer_unit_type *&buffer, arrayView1d< localIndex const > const &packList, arrayView1d< globalIndex const > const &embeddedSurfacesLocalToGlobal) const
	Packs the set of fractured elements and the element-to-embeddedSurfaces map of the elements in the @ packList. More...

localIndex	unpackFracturedElements (buffer_unit_type const *&buffer, localIndex_array &packList, unordered_map< globalIndex, localIndex > const &embeddedSurfacesGlobalToLocal)
	Unpacks the set of fractured elemetn and the element-to-embeddedSurfaces map from `buffer`. More...

virtual void	fixUpDownMaps (bool const clearIfUnmapped) final override
	Call ObjectManagerBase::fixUpDownMaps for the connectivity maps needed by the derived class (i.e., element-to-node map, element-to-face map, etc) More...

Miscellaneous
template<typename LAMBDA >
void	forMaterials (LAMBDA lambda)
	Helper function to apply a lambda function over all constructive groups. More...

Public Member Functions inherited from geosx::CellBlock
	CellBlock ()=delete
	Deleted default constructor.

	CellBlock (string const &name, Group *const parent)
	Constructor for this class. More...

	CellBlock (const CellBlock &init)=delete
	Copy constructor. More...

virtual	~CellBlock () override
	Destructor.

virtual void	calculateElementGeometricQuantities (NodeManager const &nodeManager, FaceManager const &faceManager) override
	Calculate the geometric quantities for each element in the subregion. More...

virtual void	setupRelatedObjectsInRelations (MeshLevel const &mesh) override
	Link the connectivity maps of the subregion to the managers storing the mesh information. More...

virtual void	setElementType (ElementType const elementType) override
	Set the type of element in this subregion. More...

localIndex	getNumFaceNodes (localIndex const elementIndex, localIndex const localFaceIndex) const
	Get the number of the nodes in a face of the element. More...

localIndex	getFaceNodes (localIndex const elementIndex, localIndex const localFaceIndex, localIndex *const nodeIndices) const
	Get the local indices of the nodes in a face of the element. More...

void	getFaceNodes (localIndex const elementIndex, localIndex const localFaceIndex, localIndex_array &nodeIndices) const
	Get the local indices of the nodes in a face of the element. More...

NodeMapType &	nodeList ()
	Get the element-to-node map. More...

NodeMapType const &	nodeList () const
	Get the element-to-node map. More...

localIndex &	nodeList (localIndex const k, localIndex a)
	Get the local index of the a-th node of the k-th element. More...

localIndex const &	nodeList (localIndex const k, localIndex a) const
	Get the local index of the a-th node of the k-th element. More...

FixedOneToManyRelation &	edgeList ()
	Get the element-to-edge map. More...

FixedOneToManyRelation const &	edgeList () const
	Get the element-to-edge map. More...

FixedOneToManyRelation &	faceList ()
	Get the element-to-face map. More...

FixedOneToManyRelation const &	faceList () const
	Get the element-to-face map. More...

template<typename T >
T &	addProperty (string const &propertyName)
	Add a property to the CellBlock. More...

template<typename LAMBDA >
void	forExternalProperties (LAMBDA &&lambda)
	Helper function to apply a lambda function over all the external properties of the subregion. More...

virtual const string	getCatalogName () const override final
	Const getter for the catalog name. More...

Public Member Functions inherited from geosx::ElementSubRegionBase
	ElementSubRegionBase (string const &name, dataRepository::Group *const parent)
	Constructor for this class. More...

	~ElementSubRegionBase ()
	Destructor.

localIndex const &	numNodesPerElement () const
	Get the number of nodes per element. More...

virtual localIndex	numNodesPerElement (localIndex const k) const
	Get the number of nodes per element. More...

void	setNumNodesPerElement (localIndex numNodes)
	Set the number of nodes per element. More...

localIndex const &	numIndependentNodesPerElement () const
	Get the number of independent nodes per element. More...

void	setNumIndependentNodesPerElement (localIndex const numNodes)
	Set the number of independent nodes per element. More...

localIndex const &	numEdgesPerElement () const
	Get the number of edges per element. More...

void	setNumEdgesPerElement (localIndex const numEdges)
	Set the number of edges per element. More...

localIndex const &	numFacesPerElement () const
	Get the number of faces per element. More...

void	setNumFacesPerElement (localIndex const numFaces)
	Set the number of faces per element. More...

arrayView2d< real64 const >	getElementCenter () const
	Get the center of each element in this subregion. More...

arrayView2d< real64 >	getElementCenter ()
	Get the center of each element in this subregion. More...

arrayView1d< real64 const >	getElementVolume () const
	Get the volume of each element in this subregion. More...

dataRepository::Group const &	getConstitutiveModels () const
	Get the group in which the constitutive models of this subregion are registered. More...

dataRepository::Group &	getConstitutiveModels ()
	Get the group in which the constitutive models of this subregion are registered. More...

template<typename T = constitutive::ConstitutiveBase>
T const &	getConstitutiveModel (string const &name) const
	Get a pointer to the constitutive model. More...

template<typename T = constitutive::ConstitutiveBase>
T &	getConstitutiveModel (string const &name)
	Get a pointer to the constitutive model. More...

ElementType	getElementType () const
	Get the type of element in this subregion. More...

Public Member Functions inherited from geosx::ObjectManagerBase
	ObjectManagerBase (string const &name, dataRepository::Group *const parent)
	Constructor. More...

	~ObjectManagerBase () override
	Destructor.

virtual localIndex	packSize (string_array const &wrapperNames, arrayView1d< localIndex const > const &packList, integer const recursive, bool onDevice, parallelDeviceEvents &events) const override
	Get the size required to pack a list of indices within a list of wrappers. More...

virtual localIndex	pack (buffer_unit_type *&buffer, string_array const &wrapperNames, arrayView1d< localIndex const > const &packList, integer const recursive, bool onDevice, parallelDeviceEvents &events) const override
	Pack a list of indices within a list of wrappers. More...

virtual localIndex	unpack (buffer_unit_type const *&buffer, arrayView1d< localIndex > &packList, integer const recursive, bool onDevice, parallelDeviceEvents &events) override
	Unpack a buffer. More...

template<bool DOPACK>
localIndex	packSets (buffer_unit_type *&buffer, arrayView1d< localIndex const > const &packList) const
	Packs the elements of each set that actually are in `packList`. More...

localIndex	unpackSets (buffer_unit_type const *&buffer)
	Unpack the content of `buffer` into the sets of the instance. More...

virtual localIndex	packGlobalMapsSize (arrayView1d< localIndex const > const &packList, integer const recursive) const
	Computes the pack size of the global maps elements in the @ packList. More...

virtual localIndex	packGlobalMaps (buffer_unit_type *&buffer, arrayView1d< localIndex const > const &packList, integer const recursive) const
	Packs the global maps elements in the @ packList. More...

void	setReceiveLists ()
	Clear and redefines the ghosts to receive.

virtual localIndex	unpackGlobalMaps (buffer_unit_type const *&buffer, localIndex_array &packList, integer const recursive)
	Unpacks the global maps from `buffer`. More...

localIndex	packParentChildMapsSize (arrayView1d< localIndex const > const &packList) const
	Computes the pack size of the parent/child relations in `packList`. More...

localIndex	packParentChildMaps (buffer_unit_type *&buffer, arrayView1d< localIndex const > const &packList) const
	Packs the parent/child relations in `packList`. More...

localIndex	unpackParentChildMaps (buffer_unit_type const *&buffer, localIndex_array &packList)
	Unacks the parent/child relations in `packList`. More...

void	moveSets (LvArray::MemorySpace const targetSpace)
	Manually move all sets to a memory space. More...

localIndex	resize (localIndex const newSize, const bool)
	Resize the group and all contained wrappers that resize with parent. More...

void	createSet (const string &newSetName)
	Creates a new set. More...

void	constructSetFromSetAndMap (SortedArrayView< localIndex const > const &inputSet, const array2d< localIndex > &map, const string &setName)
	Builds a new set on this instance given another objects set and the map between them. More...

void	constructSetFromSetAndMap (SortedArrayView< localIndex const > const &inputSet, const array1d< localIndex_array > &map, const string &setName)
	Builds a new set on this instance given another objects set and the map between them. More...

void	constructSetFromSetAndMap (SortedArrayView< localIndex const > const &inputSet, ArrayOfArraysView< localIndex const > const &map, const string &setName)
	Builds a new set on this instance given another objects set and the map between them. More...

void	constructGlobalToLocalMap ()
	Constructs the global to local map.

void	constructLocalListOfBoundaryObjects (localIndex_array &objectList) const
	Computes the (local) index list that are domain boundaries. More...

void	constructGlobalListOfBoundaryObjects (globalIndex_array &objectList) const
	Computes the (global) index list that are domain boundaries. More...

virtual void	extractMapFromObjectForAssignGlobalIndexNumbers (NodeManager const &nodeManager, std::vector< std::vector< globalIndex > > &map)
	Extract map from object and assign global indices. More...

void	setGhostRankForSenders (int const neighborRank)
	Defines `neighborRank` ownership for ghost objects. More...

localIndex	getNumberOfGhosts () const
	Get the number of ghost objects. More...

localIndex	getNumberOfLocalIndices () const
	Get the number of locally owned objects. More...

integer	splitObject (localIndex const indexToSplit, int const rank, localIndex &newIndex)
	Split object to deal with topology changes. More...

void	inheritGhostRankFromParent (std::set< localIndex > const &indices)
	sets the value of m_ghostRank to the value of the objects parent. More...

void	copyObject (localIndex const source, localIndex const destination)
	Copy object from `source` to @ destination. More...

virtual void	setMaxGlobalIndex ()
	Computes the maximum global index allong all the MPI ranks.

virtual void	enforceStateFieldConsistencyPostTopologyChange (std::set< localIndex > const &targetIndices)
	Updates the child and target indices after a topology change. More...

template<typename MESH_DATA_TRAIT >
dataRepository::Wrapper< typename MESH_DATA_TRAIT::type > &	registerExtrinsicData (string const &nameOfRegisteringObject)
	Register data with this ObjectManagerBase using a dataRepository::Wrapper. More...

template<typename MESH_DATA_TRAIT0 , typename MESH_DATA_TRAIT1 , typename ... MESH_DATA_TRAITS>
void	registerExtrinsicData (string const &nameOfRegisteringObject)
	Register a collection of data with this ObjectManagerBase using a dataRepository::Wrapper. More...

template<typename MESH_DATA_TRAIT >
GEOSX_DECLTYPE_AUTO_RETURN	getExtrinsicData () const
	Get a view to the data associated with a trait from this ObjectManagerBase. More...

template<typename MESH_DATA_TRAIT >
GEOSX_DECLTYPE_AUTO_RETURN	getExtrinsicData ()
	Get the data associated with a trait from this ObjectManagerBase. More...

template<typename MESH_DATA_TRAIT >
bool	hasExtrinsicData () const
	Checks if an extrinsic data has been registered. More...

virtual groupKeyStruct &	groupKeys ()
	Get the group keys for Group access. More...

virtual groupKeyStruct const &	groupKeys () const
	Get the group keys for Group access, const version. More...

Group &	sets ()
	Get the group holding the object sets. More...

Group const &	sets () const
	Get the group holding the object sets, const version. More...

SortedArray< localIndex > &	externalSet ()
	Get the external set. More...

SortedArrayView< localIndex const >	externalSet () const
	Get the external set, const version. More...

void	updateGlobalToLocalMap (localIndex const lid)
	Updates (if needed) the global index for local index `lid`. More...

arrayView1d< globalIndex >	localToGlobalMap ()
	Get local to global map. More...

arrayView1d< globalIndex const >	localToGlobalMap () const
	Get local to global map, const version. More...

unordered_map< globalIndex, localIndex > const &	globalToLocalMap () const
	Get global to local map. More...

localIndex	globalToLocalMap (globalIndex const gid) const
	Retrieves the local index for given global index. More...

array1d< integer > const &	isExternal ()
	Get the locality information of the objects. More...

arrayView1d< integer const >	isExternal () const
	Get the locality information of the objects. More...

array1d< integer > const &	ghostRank ()
	Get the ghost information of each object. More...

arrayView1d< integer const >	ghostRank () const
	Get the ghost information of each object, const version. More...

NeighborData &	getNeighborData (int const rank)
	Get neighbor data for given `rank`. More...

NeighborData const &	getNeighborData (int const rank) const
	Get neighbor data for given `rank`, const version. More...

void	addNeighbor (int const rank)
	Add a neighbor for `rank`. More...

void	removeNeighbor (int const rank)
	Remove neighbor for `rank`. More...

globalIndex	localMaxGlobalIndex () const
	Get the local maximum global index on this rank. More...

globalIndex	maxGlobalIndex () const
	Get the maximum global index of all objects across all rank. See. More...

arrayView1d< integer >	getDomainBoundaryIndicator ()
	Get the domain boundary indicator. More...

arrayView1d< integer const >	getDomainBoundaryIndicator () const
	Get the domain boundary indicator. More...

Public Member Functions inherited from geosx::dataRepository::Group
virtual bool	registerCallback (void *func, const std::type_info &funcType)
	Register a callback function on the group. More...

	Group (string const &name, Group *const parent)
	Constructor. More...

	Group (string const &name, conduit::Node &rootNode)
	Constructor. More...

	Group (Group &&source)=default
	Move constructor. More...

virtual	~Group ()
	Destructor, deletes all Groups and Wrappers owned by this Group.

	Group ()=delete
	Deleted default constructor.

	Group (Group const &)=delete
	Deleted copy constructor.

Group &	operator= (Group const &)=delete
	Deleted copy assignment operator. More...

Group &	operator= (Group &&)=delete
	Deleted move assignment operator. More...

void	printDataHierarchy (integer indent=0)
	Prints the data hierarchy recursively. More...

string	dumpInputOptions () const

template<typename T = Group>
T &	registerGroup (string const &name, std::unique_ptr< T > newObject)
	Register a new Group as a sub-group of current Group. More...

template<typename T = Group>
T &	registerGroup (string const &name, T *newObject)
	Register a new Group as a sub-group of current Group. More...

template<typename T = Group>
T &	registerGroup (string const &name)
	Register a new Group as a sub-group of current Group. More...

template<typename T = Group>
T &	registerGroup (subGroupMap::KeyIndex const &keyIndex)
	Register a new Group as a sub-group of current Group. More...

template<typename T = Group, typename TBASE = Group>
T &	registerGroup (string const &name, string const &catalogName)
	Register a new Group as a sub-group of current Group. More...

void	deregisterGroup (string const &name)
	Removes a child group from this group. More...

virtual Group *	createChild (string const &childKey, string const &childName)
	Creates a new sub-Group using the ObjectCatalog functionality. More...

template<typename T = Group, typename KEY = void>
T *	getGroupPointer (KEY const &key)
	Return a pointer to a sub-group of the current Group. More...

template<typename T = Group, typename KEY = void>
T const *	getGroupPointer (KEY const &key) const
	Return a pointer to a sub-group of the current Group. More...

template<typename T = Group, typename KEY = void>
T &	getGroup (KEY const &key)
	Return a reference to a sub-group of the current Group. More...

template<typename T = Group, typename KEY = void>
T const &	getGroup (KEY const &key) const
	Return a reference to a sub-group of the current Group. More...

template<typename T = Group>
T &	getGroupByPath (string const &path)
	Retrieve a group from the hierarchy using a path. More...

template<typename T = Group>
T const &	getGroupByPath (string const &path) const
	Retrieve a group from the hierarchy using a path. More...

subGroupMap &	getSubGroups ()
	Get the subgroups object. More...

subGroupMap const &	getSubGroups () const
	Get the subgroups object. More...

localIndex	numSubGroups () const
	return the number of sub groups in this Group More...

template<typename T = Group>
bool	hasGroup (string const &name) const
	Check whether a sub-group exists. More...

template<typename GROUPTYPE = Group, typename ... GROUPTYPES, typename LAMBDA >
void	forSubGroups (LAMBDA &&lambda)
	Apply the given functor to subgroups that can be casted to one of specified types. More...

template<typename GROUPTYPE = Group, typename ... GROUPTYPES, typename LAMBDA >
void	forSubGroups (LAMBDA &&lambda) const
	Apply the given functor to subgroups that can be casted to one of specified types. More...

template<typename GROUPTYPE = Group, typename ... GROUPTYPES, typename LOOKUP_CONTAINER , typename LAMBDA >
void	forSubGroups (LOOKUP_CONTAINER const &subGroupKeys, LAMBDA &&lambda)

template<typename GROUPTYPE = Group, typename ... GROUPTYPES, typename LOOKUP_CONTAINER , typename LAMBDA >
void	forSubGroups (LOOKUP_CONTAINER const &subGroupKeys, LAMBDA &&lambda) const

template<typename LAMBDA >
void	forWrappers (LAMBDA &&lambda)
	Apply the given functor to wrappers. More...

template<typename LAMBDA >
void	forWrappers (LAMBDA &&lambda) const
	Apply the given functor to wrappers. More...

template<typename TYPE , typename ... TYPES, typename LAMBDA >
void	forWrappers (LAMBDA &&lambda)
	Apply the given functor to wrappers that can be cast to one of specified types. More...

template<typename TYPE , typename ... TYPES, typename LAMBDA >
void	forWrappers (LAMBDA &&lambda) const
	Apply the given functor to wrappers that can be cast to one of specified types. More...

void	initialize ()
	Run initialization functions on this and all subgroups. More...

virtual void	initializationOrder (string_array &order)
	Sets the initialization order for sub-Groups. More...

void	initializePostInitialConditions ()
	Initialization routine to be called after calling ApplyInitialConditions(). More...

void	postRestartInitializationRecursive ()
	Initialization routine to be called after calling reading a restart file. More...

void	processInputFileRecursive (xmlWrapper::xmlNode &targetNode)
	Recursively read values using ProcessInputFile() from the input file and put them into the wrapped values for this group. More...

void	postProcessInputRecursive ()
	Recursively call postProcessInput() to apply post processing after reading input values.

template<typename T , typename TBASE = T>
Wrapper< TBASE > &	registerWrapper (string const &name, wrapperMap::KeyIndex::index_type *const rkey=nullptr)
	Create and register a Wrapper around a new object. More...

template<typename T , typename TBASE = T>
Wrapper< TBASE > &	registerWrapper (Group::wrapperMap::KeyIndex const &viewKey)

template<typename T >
Wrapper< T > &	registerWrapper (string const &name, std::unique_ptr< T > newObject)
	Register a Wrapper around a given object and take ownership. More...

template<typename T >
Wrapper< T > &	registerWrapper (string const &name, T *newObject)
	Register a Wrapper around an existing object, does not take ownership of the object. More...

WrapperBase &	registerWrapper (string const &name, std::unique_ptr< WrapperBase > wrapper)
	Register and take ownership of an existing Wrapper. More...

void	deregisterWrapper (string const &name)
	Removes a Wrapper from this group. More...

void	generateDataStructureSkeleton (integer const level)
	Build a complete datastructure for schema generation. More...

virtual void	expandObjectCatalogs ()
	Expand any catalogs in the data structure.

virtual void	setSchemaDeviations (xmlWrapper::xmlNode schemaRoot, xmlWrapper::xmlNode schemaParent, integer documentationType)
	Inform the schema generator of any deviations between the xml and GEOS data structures. More...

virtual void	registerDataOnMeshRecursive (Group &meshBodies)
	Calls RegisterDataOnMesh() recursively. More...

virtual void	registerDataOnMesh (Group &meshBodies)
	Register data on mesh entities. More...

virtual localIndex	packSize (string_array const &wrapperNames, integer const recursive, bool onDevice, parallelDeviceEvents &events) const
	Get the size required to pack a list of wrappers. More...

virtual localIndex	pack (buffer_unit_type *&buffer, string_array const &wrapperNames, integer const recursive, bool onDevice, parallelDeviceEvents &events) const
	Pack a list of wrappers to a buffer. More...

template<typename KEY >
WrapperBase const &	getWrapperBase (KEY const &key) const
	Return a reference to a WrapperBase stored in this group. More...

template<typename KEY >
WrapperBase &	getWrapperBase (KEY const &key)
	Return a reference to a WrapperBase stored in this group. More...

indexType	getWrapperIndex (string const &name) const

wrapperMap const &	wrappers () const
	Get access to the internal wrapper storage. More...

wrapperMap &	wrappers ()
	Get access to the internal wrapper storage. More...

indexType	numWrappers () const
	Return the number of wrappers. More...

template<typename LOOKUP_TYPE >
bool	hasWrapper (LOOKUP_TYPE const &lookup) const
	Check if a wrapper exists. More...

template<typename T , typename LOOKUP_TYPE >
Wrapper< T > const &	getWrapper (LOOKUP_TYPE const &index) const
	Retrieve a Wrapper stored in this group. More...

template<typename T , typename LOOKUP_TYPE >
Wrapper< T > &	getWrapper (LOOKUP_TYPE const &index)
	Retrieve a Wrapper stored in this group. More...

template<typename T , typename LOOKUP_TYPE >
Wrapper< T > const *	getWrapperPointer (LOOKUP_TYPE const &index) const
	Retrieve a Wrapper stored in this group. More...

template<typename T , typename LOOKUP_TYPE >
Wrapper< T > *	getWrapperPointer (LOOKUP_TYPE const &index)
	Retrieve a Wrapper stored in this group. More...

template<typename T , typename LOOKUP_TYPE >
GEOSX_DECLTYPE_AUTO_RETURN	getReference (LOOKUP_TYPE const &lookup) const
	Look up a wrapper and get reference to wrapped object. More...

template<typename T , typename LOOKUP_TYPE >
T &	getReference (LOOKUP_TYPE const &lookup)
	Look up a wrapper and get reference to wrapped object. More...

virtual void	resize (localIndex const newSize)
	Resize the group and all contained wrappers that resize with parent. More...

virtual void	reserve (indexType const newsize)
	Set the new capacity and reserve it in all wrappers that resize with parent. More...

localIndex	capacity () const
	Get the "capacity" of the group, which determines the capacity of resizable wrappers. More...

localIndex	size () const
	Get the "size" of the group, which determines the number of elements in resizable wrappers. More...

string const &	getName () const
	Get group name. More...

string	getPath () const
	Return the path of this Group in the data repository. More...

Group &	getParent ()
	Access the group's parent. More...

Group const &	getParent () const
	Access the group's parent. More...

localIndex	getIndexInParent () const
	Get the group's index withing its parent group. More...

integer	sizedFromParent () const
	Check whether this Group is resized when its parent is resized. More...

Group &	setSizedFromParent (int val)
	Set whether this wrapper is resized when its parent is resized. More...

RestartFlags	getRestartFlags () const
	Get flags that control restart output of this group. More...

void	setRestartFlags (RestartFlags flags)
	Set flags that control restart output of this group. More...

InputFlags	getInputFlags () const
	Get input flags for schema generation. More...

void	setInputFlags (InputFlags flags)
	Set input flags for schema generation. More...

conduit::Node &	getConduitNode ()
	Return the Conduit node object associated with this group. More...

conduit::Node const &	getConduitNode () const
	Return the Conduit node object associated with this group. More...

void	prepareToWrite ()
	Register the group and its wrappers with Conduit.

void	finishWriting ()
	Write the group and its wrappers into Conduit.

void	loadFromConduit ()
	Read the group and its wrappers from Conduit.

void	enableLogLevelInput ()
	Enable verbosity input for object.

integer	getLogLevel () const

Public Attributes
geosx::CellElementSubRegion::viewKeyStruct	m_CellBlockSubRegionViewKeys
	viewKey struct for the CellElementSubRegion class

map< string, localIndex_array >	m_constitutiveGrouping
	Map used for constitutive grouping.

array3d< real64 >	m_constitutivePointVolumeFraction
	Array of constitutive point volume fraction.

Public Attributes inherited from geosx::ObjectManagerBase
struct geosx::ObjectManagerBase::viewKeyStruct	m_ObjectManagerBaseViewKeys
	viewKey struct for the ObjectManagerBase class

struct geosx::ObjectManagerBase::groupKeyStruct	m_ObjectManagerBaseGroupKeys
	groupKey struct for the ObjectManagerBase class

Additional Inherited Members
Static Public Member Functions inherited from geosx::CellBlock
static const string	catalogName ()
	Const getter for the catalog name. More...

Static Public Member Functions inherited from geosx::ObjectManagerBase
template<typename TYPE_RELATION >
static void	fixUpDownMaps (TYPE_RELATION &relation, map< localIndex, array1d< globalIndex > > &unmappedIndices, bool const clearIfUnmapped)
	Fixing the up/down maps by mapping the unmapped indices. More...

template<typename TYPE_RELATION >
static void	fixUpDownMaps (TYPE_RELATION &relation, map< localIndex, SortedArray< globalIndex > > &unmappedIndices, bool const clearIfUnmapped)
	Fixing the up/down maps by mapping the unmapped indices. More...

static void	fixUpDownMaps (ArrayOfSets< localIndex > &relation, unordered_map< globalIndex, localIndex > const &globalToLocal, map< localIndex, SortedArray< globalIndex > > &unmappedIndices, bool const clearIfUnmapped)
	Fixing the up/down maps by mapping the unmapped indices. More...

static void	cleanUpMap (std::set< localIndex > const &targetIndices, array1d< SortedArray< localIndex > > &upmap, arrayView2d< localIndex const > const &downmap)
	Removes from the list of arrays of `upmap` all the elements for which the "mirror target array" of `downmap` does not contain the proper target index. More...

static void	cleanUpMap (std::set< localIndex > const &targetIndices, ArrayOfSetsView< localIndex > const &upmap, arrayView2d< localIndex const > const &downmap)
	Removes from the list of sets of `upmap` all the elements for which the "mirror target array" of `downmap` does not contain the proper target index. More...

static void	cleanUpMap (std::set< localIndex > const &targetIndices, array1d< SortedArray< localIndex > > &upmap, arrayView1d< arrayView1d< localIndex const > const > const &downmap)
	Removes from the list of arrays of `upmap` all the elements for which the "mirror target array" of `downmap` does not contain the proper target index. More...

static void	cleanUpMap (std::set< localIndex > const &targetIndices, ArrayOfSetsView< localIndex > const &upmap, arrayView1d< arrayView1d< localIndex const > const > const &downmap)
	Removes from the list of sets of `upmap` all the elements for which the "mirror target array" of `downmap` does not contain the proper target index. More...

static void	cleanUpMap (std::set< localIndex > const &targetIndices, ArrayOfSetsView< localIndex > const &upmap, ArrayOfArraysView< localIndex const > const &downmap)
	Removes from the list of sets of `upmap` all the elements for which the "mirror target array" of `downmap` does not contain the proper target index. More...

static localIndex	getParentRecusive (arraySlice1d< localIndex const > const &parentIndices, localIndex const lookup)
	Get the upmost parent. More...

static CatalogInterface::CatalogType &	getCatalog ()
	Acessing the unique instance of this catalog. More...

Static Public Member Functions inherited from geosx::dataRepository::Group
template<typename T0 , typename T1 , typename ... CASTTYPES, typename CONTAINERTYPE , typename LAMBDA >
static bool	applyLambdaToContainer (CONTAINERTYPE &container, LAMBDA &&lambda)
	Apply a given functor to a container if the container can be cast to one of the specified types. More...

static CatalogInterface::CatalogType &	getCatalog ()
	Get the singleton catalog for this class. More...

Protected Member Functions inherited from geosx::dataRepository::Group
virtual void	postProcessInput ()

virtual void	initializePreSubGroups ()
	Called by Initialize() prior to initializing sub-Groups.

virtual void	initializePostSubGroups ()
	Called by Initialize() after to initializing sub-Groups.

virtual void	initializePostInitialConditionsPreSubGroups ()
	Called by InitializePostInitialConditions() prior to initializing sub-Groups.

virtual void	initializePostInitialConditionsPostSubGroups ()
	Called by InitializePostInitialConditions() after to initializing sub-Groups.

virtual void	postRestartInitialization ()
	Performs initialization required after reading from a restart file.

Protected Attributes inherited from geosx::CellBlock
NodeMapType	m_toNodesRelation
	Element-to-node relation.

EdgeMapType	m_toEdgesRelation
	Element-to-edge relation.

FaceMapType	m_toFacesRelation
	Element-to-face relation.

Protected Attributes inherited from geosx::ElementSubRegionBase
localIndex	m_numNodesPerElement
	Number of nodes per element in this subregion.

localIndex	m_numIndependentNodesPerElement
	Number of independent nodes per element in this subregion.

localIndex	m_numEdgesPerElement
	Number of edges per element in this subregion.

localIndex	m_numFacesPerElement
	Number of faces per element in this subregion.

array2d< real64 >	m_elementCenter
	Member level field for the element center.

array1d< real64 >	m_elementVolume
	Member level field for the element volume.

ElementType	m_elementType
	Type of element in this subregion.

Protected Attributes inherited from geosx::ObjectManagerBase
Group	m_sets
	Group that holds object sets.

Group	m_neighborGroup
	Group that holds all the NeighborData objects.

array1d< globalIndex >	m_localToGlobalMap
	Contains the global index of each object.

unordered_map< globalIndex, localIndex >	m_globalToLocalMap
	Map from object global index to the local index.

array1d< integer >	m_isExternal
	Array that holds if an object is external.

array1d< integer >	m_domainBoundaryIndicator
	Domain boundary indicator: 1 means the "index" is on the boundary.

array1d< integer >	m_ghostRank
	Array that holds the ghost information about each object. More...

unordered_map< int, NeighborData >	m_neighborData
	A map from rank to the associated NeighborData object.

real64	m_overAllocationFactor = 1.1
	Factor by which to overallocate when adding objects.

globalIndex	m_maxGlobalIndex = -1
	The maximum global index of all objects across all rank.

globalIndex	m_localMaxGlobalIndex = -1
	The maximum global index of any object of all objects on this rank.

Detailed Description

Class deriving from CellBlock further specializing the element subregion for a cell element. This is the class used in the physics solvers to represent a collection of mesh cell elements

Definition at line 30 of file CellElementSubRegion.hpp.

Constructor & Destructor Documentation

◆ CellElementSubRegion()

geosx::CellElementSubRegion::CellElementSubRegion	(	string const &	name,
		Group *const	parent
	)

Constructor for this class.

Parameters

[in]	name	the name of this object manager
[in]	parent	the parent Group

Member Function Documentation

◆ addFracturedElement()

void geosx::CellElementSubRegion::addFracturedElement	(	localIndex const	cellElemIndex,
		localIndex const	embSurfIndex
	)

Add fractured element to list and relative entries to the map.

Parameters

cellElemIndex	cell element index
embSurfIndex	embedded surface element index

◆ calculateElementCenters()

void geosx::CellElementSubRegion::calculateElementCenters ( arrayView2d< real64 const, nodes::REFERENCE_POSITION_USD > const & X ) const

inline

Compute the center of each element in the subregion.

Parameters

[in] X an arrayView of (const) node positions

Definition at line 233 of file CellElementSubRegion.hpp.

◆ copyFromCellBlock()

void geosx::CellElementSubRegion::copyFromCellBlock ( CellBlock & source )

Fill the CellElementSubRegion by copying those of the source CellBlock.

Parameters

source the CellBlock whose properties (connectivity info) will be copied

◆ detJ() [1/2]

array2d< real64 >& geosx::CellElementSubRegion::detJ ( )

inline

Returns: The array of jacobian determinantes.

Definition at line 198 of file CellElementSubRegion.hpp.

◆ detJ() [2/2]

arrayView2d< real64 const > geosx::CellElementSubRegion::detJ ( ) const

inline

Returns: The array of jacobian determinantes.

Definition at line 204 of file CellElementSubRegion.hpp.

◆ dNdX() [1/2]

array4d< real64 >& geosx::CellElementSubRegion::dNdX ( )

inline

Returns: The array of shape function derivatives.

Definition at line 186 of file CellElementSubRegion.hpp.

◆ dNdX() [2/2]

arrayView4d< real64 const > geosx::CellElementSubRegion::dNdX ( ) const

inline

Returns: The array of shape function derivatives.

Definition at line 192 of file CellElementSubRegion.hpp.

◆ embeddedSurfacesList() [1/2]

EmbSurfMapType& geosx::CellElementSubRegion::embeddedSurfacesList ( )

inline

Returns: The map to the embedded surfaces

Definition at line 222 of file CellElementSubRegion.hpp.

◆ embeddedSurfacesList() [2/2]

EmbSurfMapType const& geosx::CellElementSubRegion::embeddedSurfacesList ( ) const

inline

Returns: The map to the embedded surfaces

Definition at line 227 of file CellElementSubRegion.hpp.

◆ fixUpDownMaps()

virtual void geosx::CellElementSubRegion::fixUpDownMaps ( bool const clearIfUnmapped )

finaloverridevirtual

Call ObjectManagerBase::fixUpDownMaps for the connectivity maps needed by the derived class (i.e., element-to-node map, element-to-face map, etc)

Parameters

[in] clearIfUnmapped clearIfUnmapped

Reimplemented from geosx::ElementSubRegionBase.

◆ forMaterials()

template<typename LAMBDA >

void geosx::CellElementSubRegion::forMaterials ( LAMBDA lambda )

inline

Helper function to apply a lambda function over all constructive groups.

Template Parameters

LAMBDA the type of the lambda function

Parameters

lambda the lambda function

Definition at line 140 of file CellElementSubRegion.hpp.

◆ fracturedElementsList() [1/2]

SortedArray< localIndex >& geosx::CellElementSubRegion::fracturedElementsList ( )

inline

Returns: The sorted array of local fractured elements.

Definition at line 210 of file CellElementSubRegion.hpp.

◆ fracturedElementsList() [2/2]

SortedArrayView< localIndex const > const geosx::CellElementSubRegion::fracturedElementsList ( ) const

inline

Returns: The sorted array view of local fractured elements.

Definition at line 216 of file CellElementSubRegion.hpp.

◆ packFracturedElements()

localIndex geosx::CellElementSubRegion::packFracturedElements	(	buffer_unit_type *&	buffer,
		arrayView1d< localIndex const > const &	packList,
		arrayView1d< globalIndex const > const &	embeddedSurfacesLocalToGlobal
	)		const

Packs the set of fractured elements and the element-to-embeddedSurfaces map of the elements in the @ packList.

Parameters

buffer	The buffer that will receive the packed data.
packList	The element we want packed.
embeddedSurfacesLocalToGlobal	LocaltoGlobal map of the embedded surfaces.

Returns: The packed size.

◆ packFracturedElementsSize()

localIndex geosx::CellElementSubRegion::packFracturedElementsSize	(	arrayView1d< localIndex const > const &	packList,
		arrayView1d< globalIndex const > const &	embeddedSurfacesLocalToGlobal
	)		const

Computes the pack size of the set of fractured elements and the element-to-embeddedSurfaces map of the elements in the @ packList.

Parameters

packList	The element we want packed.
embeddedSurfacesLocalToGlobal	LocaltoGlobal map of the embedded surfaces.

Returns: The packed size.

◆ packUpDownMaps()

virtual localIndex geosx::CellElementSubRegion::packUpDownMaps	(	buffer_unit_type *&	buffer,
		arrayView1d< localIndex const > const &	packList
	)		const

overridevirtual

Packs the specific elements in the @ packList.

Parameters

buffer	The buffer that will receive the packed data.
packList	The element we want packed.

Returns: The packed size.

Reimplemented from geosx::ObjectManagerBase.

◆ packUpDownMapsSize()

virtual localIndex geosx::CellElementSubRegion::packUpDownMapsSize ( arrayView1d< localIndex const > const & packList ) const

overridevirtual

Computes the pack size of the specific elements in the @ packList.

Parameters

packList The element we want packed.

Returns: The packed size.

Reimplemented from geosx::ObjectManagerBase.

◆ unpackFracturedElements()

localIndex geosx::CellElementSubRegion::unpackFracturedElements	(	buffer_unit_type const *&	buffer,
		localIndex_array &	packList,
		unordered_map< globalIndex, localIndex > const &	embeddedSurfacesGlobalToLocal
	)

Unpacks the set of fractured elemetn and the element-to-embeddedSurfaces map from buffer.

Parameters

buffer	The buffer containing the packed data.
packList	The (un)packed element.
embeddedSurfacesGlobalToLocal	GlobalToLocal map of the embedded surfaces.

Returns: The unpacked size.

◆ unpackUpDownMaps()

virtual localIndex geosx::CellElementSubRegion::unpackUpDownMaps	(	buffer_unit_type const *&	buffer,
		array1d< localIndex > &	packList,
		bool const	overwriteUpMaps,
		bool const	overwriteDownMaps
	)

overridevirtual

Unpacks the specific elements in the @ packList.

Parameters

buffer	The buffer containing the packed data.
packList	The (un)packed element.
overwriteUpMaps	Clear the up maps provided.
overwriteDownMaps	Clear the down maps provided.

Returns: The packed size.

Reimplemented from geosx::ObjectManagerBase.

◆ viewKeys() [1/2]

virtual viewKeyStruct& geosx::CellElementSubRegion::viewKeys ( )

inlineoverridevirtual

Get the view keys for Group access.

Returns: The keys.

Reimplemented from geosx::ObjectManagerBase.

Definition at line 180 of file CellElementSubRegion.hpp.

◆ viewKeys() [2/2]

virtual viewKeyStruct const& geosx::CellElementSubRegion::viewKeys ( ) const

inlineoverridevirtual

Get the view keys for Group access, const version.

Returns: The keys.

Reimplemented from geosx::ObjectManagerBase.

Definition at line 181 of file CellElementSubRegion.hpp.

◆ viewPackingExclusionList()

virtual void geosx::CellElementSubRegion::viewPackingExclusionList ( SortedArray< localIndex > & exclusionList ) const

overridevirtual

Inserts in exclusionList the data that shall not be packed.

Parameters

[in,out] exclusionList Will receive the wrapper indices of the data that should not be packed.

Note that data will be inserted into exclusionList and that data previously present in exclusionList may remain.

Reimplemented from geosx::ObjectManagerBase.

The documentation for this class was generated from the following file:

coreComponents/mesh/CellElementSubRegion.hpp

Classes

Public Types

Public Member Functions

Public Attributes

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

◆ CellElementSubRegion()

Member Function Documentation

◆ addFracturedElement()

◆ calculateElementCenters()

◆ copyFromCellBlock()

◆ detJ() [1/2]

◆ detJ() [2/2]

◆ dNdX() [1/2]

◆ dNdX() [2/2]

◆ embeddedSurfacesList() [1/2]

◆ embeddedSurfacesList() [2/2]

◆ fixUpDownMaps()

◆ forMaterials()

◆ fracturedElementsList() [1/2]

◆ fracturedElementsList() [2/2]

◆ packFracturedElements()

◆ packFracturedElementsSize()

◆ packUpDownMaps()

◆ packUpDownMapsSize()

◆ unpackFracturedElements()

◆ unpackUpDownMaps()

◆ viewKeys() [1/2]

◆ viewKeys() [2/2]

◆ viewPackingExclusionList()