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| ElementSubRegionBase (string const &name, dataRepository::Group *const parent) |
| Constructor for this class. More...
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| ~ElementSubRegionBase () |
| Destructor.
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virtual void | calculateElementGeometricQuantities (NodeManager const &nodeManager, FaceManager const &faceManager)=0 |
| Calculate the geometric quantities for each element in the subregion. More...
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virtual void | setupRelatedObjectsInRelations (MeshLevel const &mesh)=0 |
| Link the connectivity maps of the subregion to the managers storing the mesh information. More...
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virtual void | fixUpDownMaps (bool const clearIfUnmapped) |
| Call ObjectManagerBase::fixUpDownMaps for the connectivity maps needed by the derived class (i.e., element-to-node map, element-to-face map, etc) More...
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localIndex const & | numNodesPerElement () const |
| Get the number of nodes per element. More...
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virtual localIndex | numNodesPerElement (localIndex const k) const |
| Get the number of nodes per element. More...
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void | setNumNodesPerElement (localIndex numNodes) |
| Set the number of nodes per element. More...
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localIndex const & | numIndependentNodesPerElement () const |
| Get the number of independent nodes per element. More...
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void | setNumIndependentNodesPerElement (localIndex const numNodes) |
| Set the number of independent nodes per element. More...
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localIndex const & | numEdgesPerElement () const |
| Get the number of edges per element. More...
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void | setNumEdgesPerElement (localIndex const numEdges) |
| Set the number of edges per element. More...
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localIndex const & | numFacesPerElement () const |
| Get the number of faces per element. More...
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void | setNumFacesPerElement (localIndex const numFaces) |
| Set the number of faces per element. More...
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arrayView2d< real64 const > | getElementCenter () const |
| Get the center of each element in this subregion. More...
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arrayView2d< real64 > | getElementCenter () |
| Get the center of each element in this subregion. More...
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arrayView1d< real64 const > | getElementVolume () const |
| Get the volume of each element in this subregion. More...
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dataRepository::Group const & | getConstitutiveModels () const |
| Get the group in which the constitutive models of this subregion are registered. More...
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dataRepository::Group & | getConstitutiveModels () |
| Get the group in which the constitutive models of this subregion are registered. More...
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template<typename T = constitutive::ConstitutiveBase> |
T const & | getConstitutiveModel (string const &name) const |
| Get a pointer to the constitutive model. More...
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template<typename T = constitutive::ConstitutiveBase> |
T & | getConstitutiveModel (string const &name) |
| Get a pointer to the constitutive model. More...
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ElementType | getElementType () const |
| Get the type of element in this subregion. More...
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virtual void | setElementType (ElementType const elementType) |
| Set the type of element in this subregion. More...
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| ObjectManagerBase (string const &name, dataRepository::Group *const parent) |
| Constructor. More...
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| ~ObjectManagerBase () override |
| Destructor.
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virtual localIndex | packSize (string_array const &wrapperNames, arrayView1d< localIndex const > const &packList, integer const recursive, bool onDevice, parallelDeviceEvents &events) const override |
| Get the size required to pack a list of indices within a list of wrappers. More...
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virtual localIndex | pack (buffer_unit_type *&buffer, string_array const &wrapperNames, arrayView1d< localIndex const > const &packList, integer const recursive, bool onDevice, parallelDeviceEvents &events) const override |
| Pack a list of indices within a list of wrappers. More...
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virtual localIndex | unpack (buffer_unit_type const *&buffer, arrayView1d< localIndex > &packList, integer const recursive, bool onDevice, parallelDeviceEvents &events) override |
| Unpack a buffer. More...
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template<bool DOPACK> |
localIndex | packSets (buffer_unit_type *&buffer, arrayView1d< localIndex const > const &packList) const |
| Packs the elements of each set that actually are in packList . More...
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localIndex | unpackSets (buffer_unit_type const *&buffer) |
| Unpack the content of buffer into the sets of the instance. More...
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virtual void | viewPackingExclusionList (SortedArray< localIndex > &exclusionList) const |
| Inserts in exclusionList the data that shall not be packed. More...
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virtual localIndex | packGlobalMapsSize (arrayView1d< localIndex const > const &packList, integer const recursive) const |
| Computes the pack size of the global maps elements in the @ packList. More...
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virtual localIndex | packGlobalMaps (buffer_unit_type *&buffer, arrayView1d< localIndex const > const &packList, integer const recursive) const |
| Packs the global maps elements in the @ packList. More...
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void | setReceiveLists () |
| Clear and redefines the ghosts to receive.
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virtual localIndex | packUpDownMapsSize (arrayView1d< localIndex const > const &packList) const |
| Computes the pack size of the specific elements in the @ packList. More...
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virtual localIndex | packUpDownMaps (buffer_unit_type *&buffer, arrayView1d< localIndex const > const &packList) const |
| Packs the specific elements in the @ packList. More...
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virtual localIndex | unpackUpDownMaps (buffer_unit_type const *&buffer, array1d< localIndex > &packList, bool const overwriteUpMaps, bool const overwriteDownMaps) |
| Unpacks the specific elements in the @ packList. More...
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virtual localIndex | unpackGlobalMaps (buffer_unit_type const *&buffer, localIndex_array &packList, integer const recursive) |
| Unpacks the global maps from buffer . More...
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localIndex | packParentChildMapsSize (arrayView1d< localIndex const > const &packList) const |
| Computes the pack size of the parent/child relations in packList . More...
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localIndex | packParentChildMaps (buffer_unit_type *&buffer, arrayView1d< localIndex const > const &packList) const |
| Packs the parent/child relations in packList . More...
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localIndex | unpackParentChildMaps (buffer_unit_type const *&buffer, localIndex_array &packList) |
| Unacks the parent/child relations in packList . More...
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void | moveSets (LvArray::MemorySpace const targetSpace) |
| Manually move all sets to a memory space. More...
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localIndex | resize (localIndex const newSize, const bool) |
| Resize the group and all contained wrappers that resize with parent. More...
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void | createSet (const string &newSetName) |
| Creates a new set. More...
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void | constructSetFromSetAndMap (SortedArrayView< localIndex const > const &inputSet, const array2d< localIndex > &map, const string &setName) |
| Builds a new set on this instance given another objects set and the map between them. More...
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void | constructSetFromSetAndMap (SortedArrayView< localIndex const > const &inputSet, const array1d< localIndex_array > &map, const string &setName) |
| Builds a new set on this instance given another objects set and the map between them. More...
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void | constructSetFromSetAndMap (SortedArrayView< localIndex const > const &inputSet, ArrayOfArraysView< localIndex const > const &map, const string &setName) |
| Builds a new set on this instance given another objects set and the map between them. More...
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void | constructGlobalToLocalMap () |
| Constructs the global to local map.
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void | constructLocalListOfBoundaryObjects (localIndex_array &objectList) const |
| Computes the (local) index list that are domain boundaries. More...
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void | constructGlobalListOfBoundaryObjects (globalIndex_array &objectList) const |
| Computes the (global) index list that are domain boundaries. More...
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virtual void | extractMapFromObjectForAssignGlobalIndexNumbers (NodeManager const &nodeManager, std::vector< std::vector< globalIndex > > &map) |
| Extract map from object and assign global indices. More...
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void | setGhostRankForSenders (int const neighborRank) |
| Defines neighborRank ownership for ghost objects. More...
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localIndex | getNumberOfGhosts () const |
| Get the number of ghost objects. More...
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localIndex | getNumberOfLocalIndices () const |
| Get the number of locally owned objects. More...
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integer | splitObject (localIndex const indexToSplit, int const rank, localIndex &newIndex) |
| Split object to deal with topology changes. More...
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void | inheritGhostRankFromParent (std::set< localIndex > const &indices) |
| sets the value of m_ghostRank to the value of the objects parent. More...
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void | copyObject (localIndex const source, localIndex const destination) |
| Copy object from source to @ destination. More...
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virtual void | setMaxGlobalIndex () |
| Computes the maximum global index allong all the MPI ranks.
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virtual void | enforceStateFieldConsistencyPostTopologyChange (std::set< localIndex > const &targetIndices) |
| Updates the child and target indices after a topology change. More...
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template<typename MESH_DATA_TRAIT > |
dataRepository::Wrapper< typename MESH_DATA_TRAIT::type > & | registerExtrinsicData (string const &nameOfRegisteringObject) |
| Register data with this ObjectManagerBase using a dataRepository::Wrapper. More...
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template<typename MESH_DATA_TRAIT0 , typename MESH_DATA_TRAIT1 , typename ... MESH_DATA_TRAITS> |
void | registerExtrinsicData (string const &nameOfRegisteringObject) |
| Register a collection of data with this ObjectManagerBase using a dataRepository::Wrapper. More...
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template<typename MESH_DATA_TRAIT > |
GEOSX_DECLTYPE_AUTO_RETURN | getExtrinsicData () const |
| Get a view to the data associated with a trait from this ObjectManagerBase. More...
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template<typename MESH_DATA_TRAIT > |
GEOSX_DECLTYPE_AUTO_RETURN | getExtrinsicData () |
| Get the data associated with a trait from this ObjectManagerBase. More...
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template<typename MESH_DATA_TRAIT > |
bool | hasExtrinsicData () const |
| Checks if an extrinsic data has been registered. More...
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virtual viewKeyStruct & | viewKeys () |
| Get the view keys for Group access. More...
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virtual viewKeyStruct const & | viewKeys () const |
| Get the view keys for Group access, const version. More...
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virtual groupKeyStruct & | groupKeys () |
| Get the group keys for Group access. More...
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virtual groupKeyStruct const & | groupKeys () const |
| Get the group keys for Group access, const version. More...
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Group & | sets () |
| Get the group holding the object sets. More...
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Group const & | sets () const |
| Get the group holding the object sets, const version. More...
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SortedArray< localIndex > & | externalSet () |
| Get the external set. More...
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SortedArrayView< localIndex const > | externalSet () const |
| Get the external set, const version. More...
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void | updateGlobalToLocalMap (localIndex const lid) |
| Updates (if needed) the global index for local index lid . More...
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arrayView1d< globalIndex > | localToGlobalMap () |
| Get local to global map. More...
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arrayView1d< globalIndex const > | localToGlobalMap () const |
| Get local to global map, const version. More...
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unordered_map< globalIndex, localIndex > const & | globalToLocalMap () const |
| Get global to local map. More...
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localIndex | globalToLocalMap (globalIndex const gid) const |
| Retrieves the local index for given global index. More...
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array1d< integer > const & | isExternal () |
| Get the locality information of the objects. More...
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arrayView1d< integer const > | isExternal () const |
| Get the locality information of the objects. More...
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array1d< integer > const & | ghostRank () |
| Get the ghost information of each object. More...
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arrayView1d< integer const > | ghostRank () const |
| Get the ghost information of each object, const version. More...
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NeighborData & | getNeighborData (int const rank) |
| Get neighbor data for given rank . More...
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NeighborData const & | getNeighborData (int const rank) const |
| Get neighbor data for given rank , const version. More...
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void | addNeighbor (int const rank) |
| Add a neighbor for rank . More...
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void | removeNeighbor (int const rank) |
| Remove neighbor for rank . More...
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globalIndex | localMaxGlobalIndex () const |
| Get the local maximum global index on this rank. More...
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globalIndex | maxGlobalIndex () const |
| Get the maximum global index of all objects across all rank. See. More...
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arrayView1d< integer > | getDomainBoundaryIndicator () |
| Get the domain boundary indicator. More...
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arrayView1d< integer const > | getDomainBoundaryIndicator () const |
| Get the domain boundary indicator. More...
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virtual const string | getCatalogName () const =0 |
| Get the name of the catalog. More...
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virtual bool | registerCallback (void *func, const std::type_info &funcType) |
| Register a callback function on the group. More...
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| Group (string const &name, Group *const parent) |
| Constructor. More...
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| Group (string const &name, conduit::Node &rootNode) |
| Constructor. More...
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| Group (Group &&source)=default |
| Move constructor. More...
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virtual | ~Group () |
| Destructor, deletes all Groups and Wrappers owned by this Group.
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| Group ()=delete |
| Deleted default constructor.
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| Group (Group const &)=delete |
| Deleted copy constructor.
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Group & | operator= (Group const &)=delete |
| Deleted copy assignment operator. More...
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Group & | operator= (Group &&)=delete |
| Deleted move assignment operator. More...
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void | printDataHierarchy (integer indent=0) |
| Prints the data hierarchy recursively. More...
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string | dumpInputOptions () const |
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template<typename T = Group> |
T & | registerGroup (string const &name, std::unique_ptr< T > newObject) |
| Register a new Group as a sub-group of current Group. More...
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template<typename T = Group> |
T & | registerGroup (string const &name, T *newObject) |
| Register a new Group as a sub-group of current Group. More...
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template<typename T = Group> |
T & | registerGroup (string const &name) |
| Register a new Group as a sub-group of current Group. More...
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template<typename T = Group> |
T & | registerGroup (subGroupMap::KeyIndex const &keyIndex) |
| Register a new Group as a sub-group of current Group. More...
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template<typename T = Group, typename TBASE = Group> |
T & | registerGroup (string const &name, string const &catalogName) |
| Register a new Group as a sub-group of current Group. More...
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void | deregisterGroup (string const &name) |
| Removes a child group from this group. More...
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virtual Group * | createChild (string const &childKey, string const &childName) |
| Creates a new sub-Group using the ObjectCatalog functionality. More...
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template<typename T = Group, typename KEY = void> |
T * | getGroupPointer (KEY const &key) |
| Return a pointer to a sub-group of the current Group. More...
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template<typename T = Group, typename KEY = void> |
T const * | getGroupPointer (KEY const &key) const |
| Return a pointer to a sub-group of the current Group. More...
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template<typename T = Group, typename KEY = void> |
T & | getGroup (KEY const &key) |
| Return a reference to a sub-group of the current Group. More...
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template<typename T = Group, typename KEY = void> |
T const & | getGroup (KEY const &key) const |
| Return a reference to a sub-group of the current Group. More...
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template<typename T = Group> |
T & | getGroupByPath (string const &path) |
| Retrieve a group from the hierarchy using a path. More...
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template<typename T = Group> |
T const & | getGroupByPath (string const &path) const |
| Retrieve a group from the hierarchy using a path. More...
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subGroupMap & | getSubGroups () |
| Get the subgroups object. More...
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subGroupMap const & | getSubGroups () const |
| Get the subgroups object. More...
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localIndex | numSubGroups () const |
| return the number of sub groups in this Group More...
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template<typename T = Group> |
bool | hasGroup (string const &name) const |
| Check whether a sub-group exists. More...
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template<typename GROUPTYPE = Group, typename ... GROUPTYPES, typename LAMBDA > |
void | forSubGroups (LAMBDA &&lambda) |
| Apply the given functor to subgroups that can be casted to one of specified types. More...
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template<typename GROUPTYPE = Group, typename ... GROUPTYPES, typename LAMBDA > |
void | forSubGroups (LAMBDA &&lambda) const |
| Apply the given functor to subgroups that can be casted to one of specified types. More...
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template<typename GROUPTYPE = Group, typename ... GROUPTYPES, typename LOOKUP_CONTAINER , typename LAMBDA > |
void | forSubGroups (LOOKUP_CONTAINER const &subGroupKeys, LAMBDA &&lambda) |
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template<typename GROUPTYPE = Group, typename ... GROUPTYPES, typename LOOKUP_CONTAINER , typename LAMBDA > |
void | forSubGroups (LOOKUP_CONTAINER const &subGroupKeys, LAMBDA &&lambda) const |
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template<typename LAMBDA > |
void | forWrappers (LAMBDA &&lambda) |
| Apply the given functor to wrappers. More...
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template<typename LAMBDA > |
void | forWrappers (LAMBDA &&lambda) const |
| Apply the given functor to wrappers. More...
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template<typename TYPE , typename ... TYPES, typename LAMBDA > |
void | forWrappers (LAMBDA &&lambda) |
| Apply the given functor to wrappers that can be cast to one of specified types. More...
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template<typename TYPE , typename ... TYPES, typename LAMBDA > |
void | forWrappers (LAMBDA &&lambda) const |
| Apply the given functor to wrappers that can be cast to one of specified types. More...
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void | initialize () |
| Run initialization functions on this and all subgroups. More...
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virtual void | initializationOrder (string_array &order) |
| Sets the initialization order for sub-Groups. More...
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void | initializePostInitialConditions () |
| Initialization routine to be called after calling ApplyInitialConditions(). More...
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void | postRestartInitializationRecursive () |
| Initialization routine to be called after calling reading a restart file. More...
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void | processInputFileRecursive (xmlWrapper::xmlNode &targetNode) |
| Recursively read values using ProcessInputFile() from the input file and put them into the wrapped values for this group. More...
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void | postProcessInputRecursive () |
| Recursively call postProcessInput() to apply post processing after reading input values.
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template<typename T , typename TBASE = T> |
Wrapper< TBASE > & | registerWrapper (string const &name, wrapperMap::KeyIndex::index_type *const rkey=nullptr) |
| Create and register a Wrapper around a new object. More...
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template<typename T , typename TBASE = T> |
Wrapper< TBASE > & | registerWrapper (Group::wrapperMap::KeyIndex const &viewKey) |
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template<typename T > |
Wrapper< T > & | registerWrapper (string const &name, std::unique_ptr< T > newObject) |
| Register a Wrapper around a given object and take ownership. More...
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template<typename T > |
Wrapper< T > & | registerWrapper (string const &name, T *newObject) |
| Register a Wrapper around an existing object, does not take ownership of the object. More...
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WrapperBase & | registerWrapper (string const &name, std::unique_ptr< WrapperBase > wrapper) |
| Register and take ownership of an existing Wrapper. More...
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void | deregisterWrapper (string const &name) |
| Removes a Wrapper from this group. More...
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void | generateDataStructureSkeleton (integer const level) |
| Build a complete datastructure for schema generation. More...
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virtual void | expandObjectCatalogs () |
| Expand any catalogs in the data structure.
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virtual void | setSchemaDeviations (xmlWrapper::xmlNode schemaRoot, xmlWrapper::xmlNode schemaParent, integer documentationType) |
| Inform the schema generator of any deviations between the xml and GEOS data structures. More...
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virtual void | registerDataOnMeshRecursive (Group &meshBodies) |
| Calls RegisterDataOnMesh() recursively. More...
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virtual void | registerDataOnMesh (Group &meshBodies) |
| Register data on mesh entities. More...
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virtual localIndex | packSize (string_array const &wrapperNames, integer const recursive, bool onDevice, parallelDeviceEvents &events) const |
| Get the size required to pack a list of wrappers. More...
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virtual localIndex | pack (buffer_unit_type *&buffer, string_array const &wrapperNames, integer const recursive, bool onDevice, parallelDeviceEvents &events) const |
| Pack a list of wrappers to a buffer. More...
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template<typename KEY > |
WrapperBase const & | getWrapperBase (KEY const &key) const |
| Return a reference to a WrapperBase stored in this group. More...
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template<typename KEY > |
WrapperBase & | getWrapperBase (KEY const &key) |
| Return a reference to a WrapperBase stored in this group. More...
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indexType | getWrapperIndex (string const &name) const |
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wrapperMap const & | wrappers () const |
| Get access to the internal wrapper storage. More...
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wrapperMap & | wrappers () |
| Get access to the internal wrapper storage. More...
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indexType | numWrappers () const |
| Return the number of wrappers. More...
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template<typename LOOKUP_TYPE > |
bool | hasWrapper (LOOKUP_TYPE const &lookup) const |
| Check if a wrapper exists. More...
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template<typename T , typename LOOKUP_TYPE > |
Wrapper< T > const & | getWrapper (LOOKUP_TYPE const &index) const |
| Retrieve a Wrapper stored in this group. More...
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template<typename T , typename LOOKUP_TYPE > |
Wrapper< T > & | getWrapper (LOOKUP_TYPE const &index) |
| Retrieve a Wrapper stored in this group. More...
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template<typename T , typename LOOKUP_TYPE > |
Wrapper< T > const * | getWrapperPointer (LOOKUP_TYPE const &index) const |
| Retrieve a Wrapper stored in this group. More...
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template<typename T , typename LOOKUP_TYPE > |
Wrapper< T > * | getWrapperPointer (LOOKUP_TYPE const &index) |
| Retrieve a Wrapper stored in this group. More...
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template<typename T , typename LOOKUP_TYPE > |
GEOSX_DECLTYPE_AUTO_RETURN | getReference (LOOKUP_TYPE const &lookup) const |
| Look up a wrapper and get reference to wrapped object. More...
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template<typename T , typename LOOKUP_TYPE > |
T & | getReference (LOOKUP_TYPE const &lookup) |
| Look up a wrapper and get reference to wrapped object. More...
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virtual void | resize (localIndex const newSize) |
| Resize the group and all contained wrappers that resize with parent. More...
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virtual void | reserve (indexType const newsize) |
| Set the new capacity and reserve it in all wrappers that resize with parent. More...
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localIndex | capacity () const |
| Get the "capacity" of the group, which determines the capacity of resizable wrappers. More...
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localIndex | size () const |
| Get the "size" of the group, which determines the number of elements in resizable wrappers. More...
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string const & | getName () const |
| Get group name. More...
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string | getPath () const |
| Return the path of this Group in the data repository. More...
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Group & | getParent () |
| Access the group's parent. More...
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Group const & | getParent () const |
| Access the group's parent. More...
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localIndex | getIndexInParent () const |
| Get the group's index withing its parent group. More...
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integer | sizedFromParent () const |
| Check whether this Group is resized when its parent is resized. More...
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Group & | setSizedFromParent (int val) |
| Set whether this wrapper is resized when its parent is resized. More...
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RestartFlags | getRestartFlags () const |
| Get flags that control restart output of this group. More...
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void | setRestartFlags (RestartFlags flags) |
| Set flags that control restart output of this group. More...
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InputFlags | getInputFlags () const |
| Get input flags for schema generation. More...
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void | setInputFlags (InputFlags flags) |
| Set input flags for schema generation. More...
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conduit::Node & | getConduitNode () |
| Return the Conduit node object associated with this group. More...
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conduit::Node const & | getConduitNode () const |
| Return the Conduit node object associated with this group. More...
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void | prepareToWrite () |
| Register the group and its wrappers with Conduit.
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void | finishWriting () |
| Write the group and its wrappers into Conduit.
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void | loadFromConduit () |
| Read the group and its wrappers from Conduit.
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void | enableLogLevelInput () |
| Enable verbosity input for object.
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integer | getLogLevel () const |
|